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1.
Brackish water ecosystems are often exposed to wide variations in environmental variables, including temperature and salinity, which may cause strong selective pressures on organisms modifying the genetic patterns of species. The aim of this work was to test whether there is a ‘divergence-with-gene flow’ in coastal lagoon populations of white seabream (Diplodus sargus) (Ria Formosa, S Portugal and Mar Menor, SE Spain) respect to four marine populations, by using partial sequences of cyt b mitochondrial gene and information from nine microsatellite loci. Genetic diversity was highest in both coastal lagoons (Mar Menor and Ria Formosa) considering mitochondrial and nuclear markers. Although some of FST population pairwise comparisons were not significant, analyses of molecular variance (AMOVAs) detected differences between groups (coastal lagoon and marine) close to significance. Also, only two haplotypes (Cytb-17 and Cytb-18) were detected in both coastal lagoon sampling sites and these localities (Mar Menor and Ria Formosa) showed the highest number of singletons, some of them with a high number of mutations, as has been already described for other Mar Menor populations (Pomatochistus marmoratus and Holothuria polii). Also, several tests detected significant positive and balancing selection considering mtDNA and microsatellite data. These data support the hypothesis of selection as one of the drivers of the genetic differences found between coastal lagoon and marine populations. The life strategy adopted by Diplodus sargus in coastal lagoons allows it to decrease its mortality rate and improve the heritability of its genes. Also, the increase time spent in coastal lagoons with different temperatures and salinities favours the fitness selection and the maintenance of exclusive haplotypes and genotypes in coastal lagoon inhabitants favouring the ‘divergence-with-gene-flow’.  相似文献   

2.
The extreme environmental variability of coastal lagoons suggests that physical and ecological factors could contribute to the genetic divergence among populations occurring in lagoon and open‐coast environments. In this study we analysed the genetic variability of lagoon and marine samples of the sand goby, Pomatoschistus marmoratus (Risso, 1810) (Pisces: Gobiidae), on the SW Spain coast. A fragment of mitochondrial DNA control region (570 bp) was sequenced for 196 individuals collected in five localities: Lo Pagan, Los Urrutias and Playa Honda (Mar Menor coastal lagoon), and Veneziola and Mazarrón (Mediterranean Sea). The total haplotype diversity was h = 0.9424 ± 0.0229, and the total nucleotide diversity was π = 0.0108 ± 0.0058. Among‐sample genetic differentiation was not significant and small‐scale patterns in the distribution of haplotypes were not apparent. Gene flow and dispersal‐related life history traits may account for low genetic structure at a small spatial scale. The high genetic diversity found in P. marmoratus increases its potential to adapt to changing conditions of the Mar Menor coastal lagoon.  相似文献   

3.
Acoustic telemetry and standard tag-recapture were used to determine the home range and residency of juveniles and sub-adults of Diplodus sargus and Diplodus vulgaris in the Ria Formosa (Portugal) coastal lagoon. Maximum time between recaptures for the standard tag-recapture method was 128 days for D. sargus and 30 days for D. vulgaris. The majority of the fish were recaptured in the vicinity of the tagging location. Fish tagged with acoustic transmitters had a maximum period of time between first and last detections of 62 days for D. sargus and 260 days for D. vulgaris. Minimum convex polygons areas ranged between 148?024 m2 and 525?930 m2 for D. sargus and between 23?786 m2 and 42?134 m2 for D. vulgaris. Both species presented a high residency index between first and last detections. Two D. sargus tagged with acoustic tags were recaptured by fishermen outside the coastal lagoon at distances of 12 km and 90 km from the tagging position, providing evidence that this species leaves the Ria Formosa during the winter time for the adjacent coastal waters. The results of this study reinforce the importance of Ria Formosa as a nursery for D. sargus and D. vulgaris in the south coast of Portugal.  相似文献   

4.
Timing, microhabitat selection and behavior from the onset of settlement to recruitment to the adult population of juvenile fishes of the genus Diplodus (Pisces: Sparidae) were investigated along a rocky coastline in the Central Mediterranean Sea. The settlement periods in Diplodus sargus and Diplodus annularis were concentrated in spring, between late May and early June, and the recruits leave the nursery grounds in late September–October. Juvenile fishes of Diplodus puntazzo and Diplodus vulgaris showed a partial time overlapping, sharing the same zones in winter and early spring, from February to May. Multiple correspondence analysis showed that sea breams settle in well‐defined habitats. The smallest juveniles of D. sargus and D. puntazzo settled primarily in the shallowest sheltered pebbly areas, located in sciaphilous crannies covered by red algae. Diplodus vulgaris settlers were observed on a wider range of substrata: rock on sand, gravel and pebbles without algal cover or large boulders, generally in deeper waters. The intermediate‐size juveniles of D. sargus, D. puntazzo and D. vulgaris showed a preference for rocky substrata with substantial algal cover, with arborescent structures (Phaeophyceae). Diplodus annularis juveniles showed high fidelity to seagrass beds (Posidonia oceanica). The home range increased over time in all species, highlighting a loss of substrate specificity: larger juveniles were even observed in deeper and different microhabitats outside nursery grounds. This study suggests that shallow infra‐littoral rocky communities with photophilic algae play a key role in recruitment of sparid fishes, affecting the distribution and abundance of juvenile fishes and therefore determining the renewal of populations and the structure of adult assemblages.  相似文献   

5.
A modelling approach is proposed to evaluate the environmental dynamics of coastal lagoons. The water, heat and salt balances are addressed simultaneously, providing a better estimation of evaporation and water exchanges. Compared to traditional approaches, the model presented accounts for the effects of water salinity, heat storage and net energy advected in the water body. The model was applied daily to the Mar Menor coastal lagoon (SE Spain) from 2003 through 2006. Water exchanges with the Mediterranean Sea were estimated based on the monthly trend of the lagoon salinity and were correlated with monthly averages of wind speed. The mean daily water exchange with the sea was 1.77 hm3 d−1. This exchange accounted for only 1% of the heat losses in the lagoon heat balance, and it is the most important flow in the water balance. The mean annual evaporation flux amounted to 101.3 W m−2 (3.55 mm d−1), while the sensible heat flux amounted to 19.7 W m−2, leading to an annual Bowen ratio on the order of 0.19. To validate the model, daily water temperatures were predicted based on the daily heat balance of the water body and were compared with remote sensing data from water surface standard products.  相似文献   

6.
The capacity for ascidians to inhabit coastal sea floor worldwide relies on their peculiar tolerance to environmental variables and pollution, which is considered, together with high levels of genetic diversity, among the main drivers of their invasive potential. In spite of the continued interest in the genetics of invasive species, little attention has been paid toward the microevolutionary processes that drive structure and fate of ascidian populations over time under chemically polluted conditions. Understanding the interplay between environmental and population dynamics is critical to predict the biodiversity of marine coastal ecosystems. In the present study, a local population of the ascidian Ciona robusta living in the Fusaro Lagoon has been monitored over a 13‐month period of sampling. Physico‐chemical parameters (temperature, salinity, turbidity, dissolved oxygen, heavy metals), genetic composition (microsatellites, ITS‐2), abundance and biomass (wet and dry weight) were assessed with the aim to infer fine‐scale temporal variation of population structure with respect to rapid environmental change. Analysis of biomass showed that C. robusta is highly sensitive to salinity and oxygen concentrations. Further, genetic analysis suggested a highly dynamic population structure, likely due to the strong clustering of temporal samples and distinct responses to environmental conditions, including bioaccumulation of heavy metals. Here, we hypothesize that rapid variation in allele frequencies of neutral markers in C. robusta populations may increase the ability of the species to colonize habitats that are subject to strong variation and are under heavy human pressure.  相似文献   

7.
中国沿海不同地区泥蚶(Tegillarca granosa)的遗传多样性分析   总被引：1，自引：0，他引：1  
以采自海南海口、广西防城港、广西北海、广东湛江、福建漳州、山东荣成、山东威海7个地理群体62个泥蚶个体为材料,获取592bp线粒体COI基因片段序列,并进行遗传多样性及分化分析。多态性遗传参数统计显示:62个个体共检测出103个多态性位点,定义了26个单倍型;总群体单倍型多样性指数为0.834,核苷酸多样性指数为0.01665,平均核苷酸差异数为9.85772。7个群体均显示出较丰富的遗传多样性,群体内遗传距离及群体内遗传多样性参数显示中国沿海泥蚶遗传多样性由北向南呈升高趋势,而群体内遗传分化系数也呈现升高的趋势。基于26个单倍型COI序列构建的NJ树和UPGMA树以及基于群体间遗传距离构建的UPGMA树显示,荣成群体和威海群体亲缘关系较近,聚成一小支,而后与漳州群体相聚,然而南方类群并没有聚为独立的一支。  相似文献   

8.
Massive tsunami disturbances have potentially detrimental effects on genetic diversity and effective population size of coastal marine species, and evaluating these effects can be useful for devising conservation strategies for coastal marine environments. Local populations of the intertidal goby Chaenogobius annularis, which are distributed on scattered rocky beaches of the Japanese Archipelago, show demographic independence without overlapping generations, making this an ideal species with which to study the effects of tsunami disturbance on genetic diversity. Some of these populations were affected by the tsunami of the 2011 off the Pacific coast of Tohoku Earthquake. Here, we investigated the change in genetic diversity of a local population of this species, which was located close to the epicenter of the earthquake, across the cohorts before and after the tsunami and evaluated the impact of the tsunami disturbance. Genetic diversity was maintained after the tsunami, and no change in the effective population size was observed. Our results suggest that the tsunami disturbance has had no marked impact on the genetic diversity of C. annularis.  相似文献   

9.
Understanding the factors that cause population divergence has long been of interest to marine biologists in their attempts to interpret the effect of human‐mediated vectors. Broadcast‐spawning species with limited dispersal capability are excellent candidates to measure the present‐day patterns of genetic diversity. The tunicate Ciona intestinalis (Ascidiacea) is comprised of a complex of morphologically cryptic species that form vigorous aggregates in eutrophic habitats (harbors, gulfs and lagoons) where they can compete with the epibenthic community and cause biofouling problems. This study investigated biogeographic variability and migration patterns of C. intestinalis sp. A along Northeast Atlantic and Mediterranean coasts using microsatellite markers. Data presented here on 371 specimens collected from 17 populations reveal high genetic polymorphism, but with a deficit of heterozygote deficiency. Absence of evidence for isolation by distance suggests that the genetic patterns do not reflect the geographic distribution of sampled populations. Substantial gene flow and artificial potential for dispersal boost high levels of within‐population genetic variability and prevent genetic differentiation within and between seas. A predominant eastward migration pattern was revealed by the data set, with very limited opportunity for C. intestinalis sp. A to travel westward. This directional movement indicates that other properties (e.g. habitat quality, genetic traits, mating system, life cycle) may cause adaptive divergence at a large biogeographic scale.  相似文献   

10.
The genetic diversity and differentiation of four Zostera marina populations along the southern coast of Korea were estimated using random amplified polymorphic DNA (RAPD) markers to determine the effects of natural and anthropogenic stresses and reproductive strategy on within‐population genetic diversity. The mean number of alleles and gene diversities, indicating population genetic diversity, was highest in the Z. marina population that was exposed to repeated environmental disturbances, and lowest in the most undisturbed population. The higher genetic diversity in the disturbed population was associated with a higher contribution of sexual reproduction to population persistence. This suggests that both the level of disturbances and the reproductive strategy for population persistence contributed significantly to population genetic diversity at the study sites. According to the analysis of molecular variance (AMOVA), 76% genetic variation was attributable to differences among individuals within populations. The observed genetic differentiation (FST = 0.241) among Z. marina populations at the study sites appeared to result from reduced meadow size, increased genetic drift, and a high incidence of asexual reproduction. Increased population genetic diversity can enhance resistance and resilience to environmental disturbances; thus, this investigation of seagrass population genetics provides valuable new insights for the conservation, management, and restoration of seagrass habitats.  相似文献   

11.
Heterogeneity in genetic composition among recruits, mostly due to a large variance in reproductive success mediated by oceanographic processes, has been reported for marine species but is less understood in coastal lagoons' organisms. Temporal genetic variation in natural populations of the Mediterranean shore crab Carcinus aestuarii was quantified over a multi-year sample. A total of 486 adult crabs were collected at eight different sites of the Venice Lagoon during the period 2005–2007 and screened for genetic variation using 11 microsatellite loci. Two additional samples (N = 115) from neighbouring sites, located approximately 100 km North and South to the Venice Lagoon, were included for the sake of comparison. Our results show significant differences in allelic frequencies at the micro-geographic scale of the Venice Lagoon, observed between sites of collection, typologies of habitat, and areas with different class of ecological risk or pattern of hemocyanin expression. However, this pattern was not constant between years, with significant differences observed mainly in 2005 and 2006, but not in 2007. Our results indicate significant temporal differences suggesting the existence of dynamic processes that act on the genetic pool of this species. Although natural selection and gene flow might play a role, we suggest that genetic drift linked to large variation in the reproductive success of individuals is the most probable scenario to explain the local genetic patterns of differentiation in the Mediterranean shore crab. Our study, by providing the first evidence for the existence of genetic differences in this species at the micro-geographic scale, suggests that a better comprehension of the link between reproduction, recruitment and oceanography is critical to understand how colonization and maintenance of genetic variation is achieved in ephemeral and vulnerable environments such as coastal lagoons.  相似文献   

12.
Knowledge of the nutritional conditions of coastal commercial fish populations is key to understanding stock health status, and is essential when making reasonable exploitation and management plans. Here, we present the first results on the condition and feeding preferences of two coastal fish species, Diplodus sargus (Linnaeus, 1758) and Pagellus erythrinus (Linnaeus, 1758). Using stable isotope and biochemical analyses, we tested the potential effects of a marine protected area (MPA) and the occurrence of a dramatic coastal storm on the condition and quality of nutrition. The results suggest that both condition (lipids) and nutrition quality (fatty acids, FAs) in P. erythrinus and D. sargus depend upon on food availability in the area in which they were captured. Pagellus erythrinus individuals inside the MPA stored higher quantities of lipids [46.73 ± 19.00 μg lipid·mg organic matter (OM)?1] than those outside the MPA (15.63 ± 5.30 μg lipid·mg OM?1) only before the storm. Diplodus sargus showed different FA signatures inside and outside the MPA before and after the storm. These results suggest that D. sargus increased their quality of nutrition inside (16.62 ± 3.17 μg FA·mg OM?1) versus outside (7.88 ± 2.36 μg FA·mg OM?1) the MPA, owing to increased food diversity and availability. Conversely, P. erythrinus did not show differences in nutritional quality inside (18.12 ± 1.13 μg FA·mg OM?1) or outside (18.81 ± 1.42 μg FA·mg OM?1) the MPA, possibly because of the increase in ingestion not affecting the studied parameters. In P. erythrinus, the FA concentration decreased after the storm, but in D. sargus, a change in lipid composition was observed. These results suggest that P. erythrinus appears to be more impacted by food quality (different saturated and unsaturated FAs) than D. sargus, owing to a more restrictive diet. We hypothesize that the observed differences between inside and outside the MPA are not only related to the degree of protection, but also to the feeding preferences and behaviour of both fishes.  相似文献   

13.
为了了解沅水五强溪大坝阻隔对光泽黄颡鱼可能造成的遗传多样性影响,采用AFLP分子标记技术,对沅水五强溪水库库区和沅水下游两个光泽黄颡鱼野生群体进行了遗传多样性分析。9对选择性引物在两个光泽黄颡鱼群体中,共扩增出1243个位点,多态位点1091个,多态位点比率为87.77%。其中库区和沅水下游群体多态位点比率分别为85.41%、83.25%,观测等位基因数分别为1.854±0.592、1.803±0.622,有效等位基因数分别为1.597±0.381、1.574±0.377,Nei’s多样性指数分别为0.220±0.211、0.207±0.195,Shannon’s信息指数分别为0.330±0.305、0.302±0.338;两个群体内的平均遗传距离分别为0.124±0.072、0.119±0.057,群体间的平均遗传距离为0.127±0.100。两个群体的遗传参数比较不存在显著差异(P0.05)。聚类分析显示,UPGMA系统树没有依据群体而形成明显的两大分支。以上结果表明,五强溪水库库区和沅水下游两个光泽黄颡鱼群体的遗传多样性丰富,光泽黄颡鱼种群遗传结构对水库大坝阻隔的响应不明显。  相似文献   

14.
Seagrass beds degraded significantly since the last century on both, global and local scale. The seagrass species Enhalus acoroides (Linnaeus f.) Royle is a common species found in almost all marine ecosystems including bays, lagoons and around offshore islands in tropical regions of the West Pacific. It was shown that genetic diversity is an essential indicator of the conditions of ecosystems. In the present study, microsatellite markers were used to assess the genetic diversity and population structure of six distinct seagrass beds along the coast of the Khanh Hoa Province, Vietnam. The results indicate that the genetic diversity of the populations in the open sea is higher than in the lagoon. Seagrass beds occurring in disturbed sites show reduced genetic diversity. The fixing index value (FST) depicts a relatively high genetic structure among populations. Structure analysis clusters the populations into open sea and lagoon populations and cluster analysis and AMOVA indicate a significant difference between the two groups. There are low but non-significant positive correlations between geographic and genetic distances. The different habitats of the open sea and the lagoon are probably responsible for forming two groups.  相似文献   

15.
《Oceanologica Acta》2003,26(1):121-128
Molecular polymorphisms (allozyme and amplified fragment length polymorphisms (AFLP)) were investigated in the mullet specie's Liza ramada and Liza saliens to determine levels of genetic variability and assess possible correlations between the population genetic structure and the specie's adaptability to shallow water environments. The thinlipped (L. ramada) and the sharpnose (L. saliens) mullets are diadromous species that enter coastal lagoons during early life stages to complete growth previous to sexual maturation. Bi-monthly samples (n = 30–50) were collected in the period 2000–2002 in different sites of the Sacca di Goro (Po river delta) and a nearby aquaculture lagoon (Valle Bertuzzi). Biochemical analyses were carried out by means of starch gel electrophoresis (SGE) on 24 genetic loci corresponding to 15 gene–enzyme systems. In addition, molecular species-specific AFLP (15 primer combinations) were obtained by means of capillary electrophoresis. The degree of allozyme variability determined at three polymorphic loci, GPI-A, GPI-B and G3PDH in L. saliens and L. ramada (polymorphic loci P = 0.08; mean heterozygosity H = 0.010–0.022) and AFLP diversity (P = 0.110–0.430), seems lower than the one reported in the literature for ecologically similar teleost species. The identification of diagnostic alleles at GPI-A, G3PDH, AK-2, CK-A, CK-B, AAT, IDH, PGM-1, PGM-2 loci in the two mullet species was used for the taxonomic classification of L. saliens and L. ramada. Molecular taxonomy (allozyme and AFLP) demonstrated that the presence of small individuals inside the lagoons previously identified according to morphological characters has often been misinterpreted. The results are discussed in relation to the adaptive role of genetic variation and the migratory characteristics of Mugilidae.  相似文献   

16.
The genetic diversity and variation of three pseudo‐species of the commercially important Indian conch Turbinella pyrum from the southeast coast of India were studied. A total of 88 individuals was genotyped at 12 loci and differences in the genetic diversity among genetic groups were correlated with known population histories. The study identified 535 alleles and all the studied loci were highly polymorphic. The number of alleles ranged between four and 29 with a global mean of 14.861. The global means of the observed and expected heterozygosities were 0.774 and 0.891, respectively. The estimated within‐population inbreeding value (FIS = 0.131) indicated a shortfall of heterozygosity in the populations. An analysis of molecular variance showed that 5% of the total variation was due to differences between genetic groups. The Bayesian approach revealed strong distinctiveness in the three genetic groups studied. Overall microsatellite analysis revealed less genetic diversity in all studied genetic groups and significant genetic variation among the three pseudo‐species. The study highlights the significant distinctiveness of the pseudo‐species of T. pyrum and the need for appropriate conservation efforts in order to prevent further losses of their genetic diversity.  相似文献   

17.
采用微卫星DNA分子标记方法对中国南部沿海多鳞鱚(Sillago sihama)广西北海、广东湛江、汕尾及海南三亚4个野生地理群体进行了遗传多样性及遗传分化等研究。结果表明:(1)用于研究的34对微卫星引物在4个群体中具有丰富的多态性,有效等位基因数介于1.71—20.46之间,多态信息含量PIC介于0.40—0.95之间。4个群体总的平均期望杂合度(He)为0.598,观测杂合度(Ho)为0.572,SY群体的杂合度最大(He=0.606,Ho=0.623),SW群体的最小(He=0.586,Ho=0.508)。(2)群体间F-统计量分析表明,群体遗传分化处于高度分化水平(Fst平均值为0.306);基于奈氏遗传距离(DA)构建的NJ和UPGMA聚类树均显示地理位置相邻的群体聚在一起。  相似文献   

18.
为了评估长牡蛎(Crassostrea gigas) 2个壳长性状(掌心形)快速生长选育群体(LY2-K4、LY2-K7)、1个壳高性状(速生型)快速生长选育群体(LY2-K11)和6个野生群体(QHD、LS、HD、ZH、WD、KTD)的遗传多样性和遗传结构, 用21对多态性丰富的微卫星引物对9个长牡蛎群体的269个个体进行了遗传分析。结果显示: 21个微卫星位点共检测出了460个等位基因(Na),平均等位基因数为21.905; 21个微卫星位点的多态信息含量(PIC)均大于0.5, 具有高度遗传多态性; 选育群体LY2-K11的遗传多样性最低(Na=13, I=2.128,He=0.831, PIC=0.825), 野生群体KTD的遗传多样性最高(Na=29,I=3.112, He=0.941, PIC=0. 938); 189个群体位点组合有66%偏离哈代-温伯格平衡, 表明这些群体存在一定程度的杂合子缺失; 9个群体间的遗传分化指数(Fst)为0.012~0.064, 处于较低的遗传分化水平; AMOVA分析显示遗传变异主要来自于个体内; PCoA分析结果与UPGMA聚类树一致, LY2-K11群体单独聚为一类, QHD和HD群体聚为一类, 其他6个群体聚为一类。综上所述, 长牡蛎3个选育群体和6个野生群体遗传多样性均较高, 遗传分化水平较低; 选育群体LY2-K11多样性略有下降, 选育过程中应保证亲本的数量及质量, 防止因近交衰退造成遗传多样性降低, 苗种抗逆性变差。该结果将为长牡蛎新品种的选育和野生种质资源的保护提供科学指导。  相似文献   

19.
应用AFLP分子标记技术首次对澳大利亚、海南岛和菲律宾3个：仲群的共60尾花鳗鲡（Anguillamarmorata）幼鱼样品进行了遗传多样性分析。4对选择性扩增引物共扩增得到180个位点,平均每对引物扩增出45个位点。澳大利亚、海南岛和菲律宾3个种群的多态位点分别为78．33％、79．44％和84．44％,Nei’s...  相似文献   

20.
基于线粒体COI序列莱州湾单环刺螠遗传多样性分析   总被引：1，自引：1，他引：0  
为系统地了解莱州湾单环刺螠(Urechis unicinctus)遗传多样性,作者基于线粒体COI序列利用基因测序技术研究了莱州湾3个单环刺螠不同群体的遗传多样性。实验结果显示,84个莱州湾单环刺螠样本有变异位点数125个,其中包括43个单一变异位点,82个简约信息位点;48个单倍型,单倍型多样性0.977;核苷酸多样性指数0.01048;平均核苷酸差异数量13.725;莱州湾单环刺螠遗传多样性水平较高;个体聚类并没有体现出和地理位置相关。  相似文献   

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