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长江中下游5个湖泊黄颡鱼(Pelteobagrus fulvidraco)种群线粒体细胞色素b基因的遗传变异分析 总被引：2，自引：2，他引：0
对长江中下游5个湖泊的黄颡鱼种群的线粒体DNA细胞色素b基因进行了PCR扩增、测序,获得了955 bp的序列.分析显示,cyt b序列中A+T含量略高于G+C含量,共检测到54个变异位点,60个样本得到37个单倍型,平均单倍型多样性为0.945±0.018,核苷酸多样性为0.00419±0.00043,遗传多样性表现中等.太湖种群与滆湖种群间的遗传距离最远为0.00651,鄱阳湖种群和巢湖种群之间遗传距离最近为0.00375.分子方差分析(AMOVA)表明,群体间遗传分化系数Fst为0.0684,几乎所有变异都来自群体内,群体间遗传分化极小.cyt b序列构建UPGMA系统进化树显示,5个种群没有分化成不同的分枝谱系,种群间存在广泛的基因交流. 相似文献
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采用特异性引物对中华刺鳅基因组DNA进行扩增和测序,获得了江苏省5个湖泊的中华刺鳅种群线粒体cyt b基因767 bp的序列.分析表明,cyt b基因中A+T含量略高于G+C含量,144个中华刺鳅共获得cyt b基因单倍型28个,变异位点38个,其中单倍型Hap1分布最为广泛,可能为祖先型单倍型.平均单倍型多样性和平均核苷酸多样性指数分别为0.58751和0.00214,遗传多样性较低.群体间遗传分化系数为0.0356,绝大多数的遗传变异都来自群体内部,而群体间的遗传分化极小.构建的系统进化树未出现明显的以单个湖泊群体的聚簇,5个湖泊的种群间基因交流极其强烈.研究结果表明,当前5个湖泊的中华刺鳅遗传多样性水平比较低,亟待加强保护. 相似文献
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通过对5个湖泊的河川沙塘鳢种群的线粒体DNA细胞色素b基因进行PCR扩增、测序,获得1141 bp的序列全长.序列分析显示,cyt b基因序列中A+T含量(55.8%)略高于G+C含量(44.2%),共检测到806个多态位点,115个样本得到87个单倍型,平均单倍型多样性为0.969±0.012,核苷酸多样性为0.20081±0.00742,遗传多样性表现高度多样性.太湖种群与大纵湖种群间的遗传距离最近,为0.137,巢湖种群和大纵湖种群之间遗传距离最远,为0.424.分子方差分析表明,群体间遗传分化系数Fst为0.531,变异来自群体内及群体间.cyt b基因序列构建的UPGMA系统进化树显示,5个种群分化成不同的分支系谱,种群间存在的基因交流较少. 相似文献
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《Limnologica》2017
The stone crayfish Austropotamobius torrentium is the smallest native European crayfish, restricted to central and southeast Europe. Northeast boundary of its range is located within the Elbe basin but considerable uncertainties existed regarding its status in this area. Until recently, known stone crayfish populations in the Elbe basin were very scattered and human translocations have been implicated in such distribution pattern. Discoveries of additional populations in the Czech Republic and Saxony (east Germany) nevertheless suggest that the species may have been more widespread there. We provide data on genetic variation (based on 181 sequences of the mitochondrial COI gene) of 20 representative populations from the Elbe basin (both from the Czech Republic and Saxony). We tested whether the haplotype variation is consistent with a scenario of natural dispersal or whether long-range transport has been involved. All analysed individuals from the easternmost, geographically isolated Czech stone crayfish population carried a haplotype previously recorded only in Slovenia and its vicinity; it is therefore likely that such population has been introduced by humans. In contrast, all remaining studied populations were dominated by a haplotype widespread in adjacent regions of species’ distribution in Germany, and additional haplotypes differing by point mutations were occasionally detected. This is consistent with a scenario of a postglacial colonization from Bavaria (southeast Germany). Our study provides evidence for a double origin of stone crayfish populations in the upper Elbe basin, with both natural and anthropogenic factors likely affecting the present diversity and distribution of this species. 相似文献
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In November 2002, the sinking of the Prestige cargo ship produced an oil spill of 60,000 tons that affected many areas along the Galician coast (in the northwest of Spain). In a number of rocky shore sites, most organisms (particularly marine mollusks) were nearly extinct at a local scale. We tested whether the local bottleneck/extinction that occurred in affected localities caused any detectable reduction of the genetic diversity in the marine snail Littorina saxatilis, an ovoviviparous rocky shore model species characterized by a low dispersal ability, high population density, and wide distribution range. We compared the level of genetic variation and population differentiation between affected (polluted) and control sites located in seven geographical areas (three sites per area, one impacted and two controls, and two replicates per site) one and a half years after the spill. The analysis included molecular marker variation (microsatellite and AFLP loci) and quantitative trait genetic variation for shell variables in embryos extracted from pregnant females. Our results indicate that the affected populations did not show a significant overall reduction in genetic diversity when compared to the controls, suggesting that the species is highly resistant to losing genetic variability as a consequence of a local short-term pollution process in spite of its low dispersal ability and direct development. However, some genetic effects were detected in the polluted populations, particularly for quantitative shell traits and AFLPs, consistent with local adaptations resulting from the fuel contamination. 相似文献
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休眠卵库作为淡水枝角类生物与遗传信息的储藏库,从沉积物休眠卵库中萌发的枝角类对现生种群的数量与种群遗传结构有着直接的影响.分别采集流溪河水库盔型溞的现生种群和沉积物表层(0~10 cm)的休眠卵,扩增现生种群与休眠卵的线粒体细胞色素C氧化酶亚基I基因,构建了单倍型网络.休眠种群相比现生种群有着较高的单倍型多样性和核酸多样性,初期现生种群分别为0.562、0.00104,末期现生种群分别为0.726、0.00331,休眠种群分别为0.815、0.00761.流溪河盔型溞现生种群与休眠种群存在双向基因流,现生种群到休眠种群的有效迁移率为490.9,休眠种群到现生种群的有效迁移率为527.5.通过构建贝叶斯系统树验证了休眠种群和现有种群中并不存在隐种或者亚种的分化,休眠种群与现生种群之间没有出现较大的遗传分化,现生种群遗传多样性来自于休眠种群,水库的休眠种群更能反映种群真实的遗传多样性.休眠种群与现生种群之间的基因流与休眠卵库大小无关,与休眠卵的萌发有关. 相似文献
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基于COI基因序列的太湖新银鱼遗传多样性 总被引：3，自引：0，他引：3
利用线粒体细胞色素C氧化酶I(COI)分子标记分析长江中下游太湖新银鱼(Neosalanx taihuensis)8个地理种群132个样本的遗传多样性.该基因630 bp片段的碱基序列共检出8个核苷酸变异位点(变异率1.27%),其中局域性单倍型居多(75%),群体单倍型多样性较高(h=0.576±0.036),而核苷酸多样性较低(π=0.00112±0.00204).不同地理种群遗传多样性差异显著:有人工移植历史种群遗传多样性较高、隔离度较高的种群遗传多样性较低,但大部分的遗传变异来自于种群内(54.83%),反映出地理隔离和人为干扰对太湖新银鱼遗传格局影响显著.研究表明COI基因适于银鱼科鱼类物种鉴别和系统发育研究,同时可为同种种群间遗传关系分析提供一定的信息. 相似文献
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Long-term contamination of the marine environment surrounding a lead smelter offered a unique opportunity to examine how pollutants might have acted to alter genetic characteristics of populations of organisms in the receiving system. This study used random amplified polymorphic DNA analysis to compare the genetic diversity of populations of the prawn, Leander intermedius, and the isopod, Platynympha longicaudata from the smelter discharge site with reference populations. The genetic diversity of the prawn population from the smelter discharge site (Port Pirie) was lower than that found in one reference population, and not significantly different from the other two reference populations. Genetic diversity of the Port Pirie population of isopods was found to be significantly lower than that of all reference populations. Prawns and isopods were also exposed to metal mixtures in the laboratory in a similar ratio to that found in seston near the smelter effluent discharge site. Both pre-exposed and reference populations of prawns tolerated elevated levels of metals and exhibited no significant difference in response. This contrasted with the isopods, with the pre-exposed isopod population showing greater tolerance to elevated metal levels compared with the reference population. These results highlight the need to include a number of reference populations for comparative purposes in genetic diversity studies, and the need to assess the influence of pollution on the genetic diversity of more than one species if genetic diversity analyses are to be used to gauge remediation success. 相似文献
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Transplantation of artificial panels between a polluted and an unpolluted site was used to evaluate eutrophication effects on the development of fouling communities in Ilha Grande Bay, SE Brazil. Organic pollution changed the relative dominance of species in the fouling communities of transplanted panels, although, their richness, evenness, and specific composition did not change. The chlorophyte Ulva sp. occurred only in the polluted site and in panels transplanted to it, whereas the bryozoan Aetea lingulata was found only in the unpolluted site and in panels transplanted to this site. These species are therefore good pollution indicators. The best pollution indicators, however, were amphipods and Spionidae polychaetes which formed mucous tubes. These groups had significantly higher values of percent cover (p<0.0001) in the polluted site and in panels transferred to it. The dominance shift is the first evidence that more meaningful changes can occur in the structure of fouling communities on a long-term scale. 相似文献
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《Limnologica》2020
Niphargus puteanus is the oldest described species of its genus and, in the past, was used as a taxonomic annotation for any subterranean amphipod record. For that reason, no clear knowledge exists about its actual range size and habitat preferences. We here applied a molecular taxonomic and phylogeographical approach based on mitochondrial and nuclear DNA to shed light on its distribution and to infer its demographic history. Furthermore, we analysed aquifer types and water flow regimes to provide a clearer picture of the species’ ecological requirements.Our results indicate that N. puteanus is widely distributed north of the Alps, having its core range in the geomorphological natural region of the ‘South German Scarplands’ (SGS). Additionally, isolated satellite populations exist in the Taunus and the Sauerland, and two single individuals were collected in Luxembourg and in Austria, respectively. The species’ maximal distribution range reaches 756 km between the two single-specimen records and 371 km within the SGS. A very high haplotype diversity was observed, revealing the presence of seven haplotype groups. All the haplogroups were present in the SGS and exhibited distinct spatial-genetic patterns. We thus inferred a high degree of population isolation, with the SGS being a potential long-term refugium for N. puteanus. Historical drift of specimens along major riverine networks (Rhine, Danube) may provide an evolutionary dispersal mechanism explaining the formation of satellite populations.From an ecological perspective, populations of N. puteanus were found to be closely associated with fast-flowing spring environments within fissured aquifers. This species should therefore be classified as both crenophile and stygophile, effectively exploiting resources of surface as well as subsurface spring waters. 相似文献
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– Five aquatic ecosystems, Yamuna river, Krishna river Eastern Kalinadi, Kadrabad drain and Peacock lake have been studied with reference to diversity and physico-chemical characteristics and biological indices. – A list of species have been selected with reference to polluted, mildly polluted or unpolluted water conditions. Though it is difficult to call any species strictly indicator species, certain species of Bacillariophyceae, bottom biota and Entomostraca can be regarded as indicative species. – The quantitative distributions of the species of different groups have been analysed statistically. Margalef's Community Diversity Index (d), Shannon Weaver Function, coefficient of rank correlation and partial and multiple correlation coefficient were calculated as to find out the order of precedence in different taxonomical groups. – The linear regression against BOD and the whole biocenosis were calculated, which indicate the relation as diversity d=6.7854 –0.0080 BOD±0.9695 where r2= B=0.7365. Similarly, multiple linear regressions were also calculated using diversity against BOD, pH and temperature for each aquatic ecosystem. – All these observations indicate that diversity of organisms can be used to measure the water pollution intensity. 相似文献
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After two sampling surveys, in 1974–1975 and 1984, and with the use of an Annelid Pollution Index, the existence of a degraded Cystoseira stricta community has been established. The community studied was present on superficial rocky substrates on the French Mediterranean coast in unpolluted or moderately polluted zones although, for the latter, pollution reduction measures had been put into effect. The most polluted station in 1984 was close to the effluent of a coastal village sewage treatment plant. 相似文献
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An examination was made of the genetic variation with age in mangrove populations in two estuaries in south-east Australia, one contaminated, the other uncontaminated. Sediment nutrient and metal levels, and isozyme/allozyme complements were measured in three age-classes in four stands in each estuary, to identify site and intergenerational genetic composition, and influences of sediment contamination. Within each river, there were greater genetic distances among the age-classes than among sampling sites. A downstream gradient of genetic distance was found in the uncontaminated river, but not the contaminated one, where genetic distances seemed to reflect site-specific factors, though apparently not the present sediment metal or nutrient levels. It appears that genetic distances in the polluted river may reflect past fluctuations in pollution pressures. In both rivers, genetic distances indicate that the mangroves within one estuary form one population, with 'neighbourhood' differentiation. 相似文献
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Plankton of the Baltic estuarine ecosystems with emphasis on Neva Estuary: a review of present knowledge and research perspectives 总被引：6，自引：0，他引：6
Telesh IV 《Marine pollution bulletin》2004,49(3):206-219
Different levels of eutrophication and pollution in the Baltic coastal waters in general, and in estuaries particularly define variations in the buffering capacity of ecosystems of these important filter zones between rivers and the adjacent Baltic Proper. Phyto- and zooplankton in the estuaries form important components of the pelagic food webs that participate in producing and structuring the matter, energy, and information fluxes in the ecosystems. Due to salinity gradients, estuaries provide a large variety of aquatic habitats for native populations of marine, brackish and fresh water plankton species. Non-indigenous planktonic species that expand their bio-geographical range and invade the Baltic coastal ecosystems also find favourable environments, establish permanent populations there, and impact aboriginal ecosystems. The dynamics of abundance, species diversity, population structure, productivity of planktonic communities, and peculiarities of trophic interactions in different Baltic estuaries are influenced by a number of common environmental factors. Being measured on the unified basis and monitored, changes (or stability) of structural and functional parameters of plankton communities can serve as indicators of alterations to the ecosystems. Comparative analyses and quantitative estimates of long-term changes in phyto- and zooplankton can contribute to evaluation of functional response of Baltic coastal ecosystems to anthropogenic stress. Both theoretical (modeling) and empirical studies of interactions within plankton communities aimed at the assessment of the role of planktonic organisms in water quality regulation, and applicability of these data for the evaluation of the status of ecosystems and their management can be considered as major goals for the future investigations in Baltic estuaries. 相似文献
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Vlahogianni T Dassenakis M Scoullos MJ Valavanidis A 《Marine pollution bulletin》2007,54(9):1361-1371
Mussels are used as sentinel organisms and bioindicators to evaluate the toxic effects of chemical pollutants in marine organisms, especially heavy metals, representing an important tool for biomonitoring environmental pollution in coastal areas. Antioxidant defence enzymes play an important role in cellular antioxidant defence systems and protect from oxidative damage by reactive oxygen species (ROS). Indigenous mussels Mytilus galloprovincialis of the Saronikos Gulf of Greece were used for monitoring heavy metal pollution in three polluted sites in the area and in one unpolluted site. Seasonal variations of the activity of antioxidant defence enzymes, superoxide dismutase (SOD) and catalase (CAT), as well as lipid peroxidation (LP) were measured as biomarkers in a period of three years in relation to concentrations of trace metals in their gills and mantle and compared to mussels from an unpolluted sampling site. SOD activity increased at least 2 fold at the polluted sites when compared to the control site (the high activity was recorded in the spring time). CAT activity was increased 2-3 times at the polluted sites, with high activity in the winter and spring time, compared to the control site. LP concentration was twice higher at the polluted sites, following the same seasonal pattern. Trace metals contents in mussels collected at polluted sites were 3-4 fold higher compared to the control site and showed moderate variations along the months, with a winter maximum followed by a summer pre-spawning minimum matching the seasonal trends of temperature and salinity. Our results showed that metal pollution in the Elefsis Bay (the most polluted coastal area) causes relatively medium levels of oxidative stress in tissues of mussels due to cellular oxy-radical generation. This study, which is the first in the area, showed that seasonal variations of the activity of antioxidant defence enzymes and LP concentrations in mussels can be used as potential biomarkers of toxicity for long-term monitoring in marine coastal ecosystems. 相似文献
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Brood pouches of periwinkles belonging to the Littorina ‘saxatilis’ species complex usually contain, in addition to the five normal stages in development, a proportion of embryos that are morphologically abnormal. The frequency of adults with a high percentage of abnormals in their brood pouches reflects to a great extent the degree of environmental stress, natural and anthropogenic, to which the adult population has been exposed.Collections of this gastropod from coastal populations along the Gower coast, in South Wales, disclosed higher frequencies of abnormal embryos from sites exposed to pollutant-laden, residual water currents in Swansea Bay, than was recorded from a clean, coastal population at Rhossili, 26 km west of Swansea, where frequencies were similar to those recorded from other unpolluted, coastal populations elsewhere in the British Isles.While environmental water quality is probably a dominating factor in determining this effect, the presence of a low frequency of high scoring individuals in clean environments points to this phenomenon having a complex aetiology. It is suggested that the underlying causal factor may be one of disease, which is present in all L. ‘saxatilis’ populations, and which is triggered by factors related to reduced environmental water quality. 相似文献
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Neil C Hulings 《Marine pollution bulletin》1982,13(2):47-49
The uranium content of nearshore sediments in the Jordan Gulf of Aqaba has been determined. The concentrations are shown to vary according to sediment type or habitat in unpolluted areas, while in a polluted area the concentration is related to phosphate dust pollution. 相似文献
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In unpolluted areas the log-normal distribution of individuals per species fits well data from many benthic communities. Using a simple plotting method, under slight pollution the data show a distinct break in the normally straight line log-normal plot and the plot covers more geometric classes than data from unpolluted areas. Under more severe pollution stress the data show a return to a log-normal distribution, but with a shallower slope, and span more geometric classes than data from less polluted areas. The above-mentioned patterns are consistent for spatial effects of pollution in Oslofjord and for temporal effects in data from a Scottish sea loch and also apply to other communities. An explanation of the reasons for such patterns is given and consideration given to the robustness of and application of the methods described. 相似文献