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3种鲍16S rRNA基因片段序列的初步研究 总被引：13，自引：0，他引：13
本文对引自日本的盘鲍 (H aliotisdiscusdiscus)、皱纹盘鲍 (H.discushannai)和大鲍 (H.gi-gantiea) 3个自然群体的线粒体 DNA 1 6S r RNA基因片段进行了扩增和测序 ,分析了 52 8bp的碱基序列 ,结果显示 :3种鲍的基因序列中 A+T含量为 56.74%～ 57.1 2 %。 3个自然群体间碱基片段序列差异不显著 ,盘鲍与皱纹盘鲍、大鲍彼此均仅有 1处核苷酸检测到变异 ,皆为碱基转换 ,同源性为99.81 % ;皱纹盘鲍与大鲍有 2处碱基转换 ,同源性为 99.61 %。 1 6Sr RNA基因在鲍属内表现出很高的保守性。 相似文献
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WNT4作为WNT基因家族的重要成员,在动物的性腺发育过程中起重要调控作用。从皱纹盘鲍(Haliotis discus hannai)转录组文库中获得WNT4基因的cDNA序列,该序列长2002 bp,包括5′非编码区(5′UTR)342bp,3′非编码区(3′UTR)595bp,开放阅读框(ORF)长度为1071bp,可以编码356个氨基酸。该蛋白序列与福寿螺(Pomaceacanaliculata)、长牡蛎(Crassostreagigas)、栉孔扇贝(Azumapectenfarreri)和厚壳贻贝(Mytiluscoruscus)的同源性分别为71.86%、 70.92%、 67.51%和65.32%。通过qRT-PCR分析WNT4基因在雌雄皱纹盘鲍不同月份不同组织中的表达特点,其结果显示,除肝胰腺外,WNT4基因在其雌雄个体不同月份的鳃、外套膜、肌肉和性腺中均有表达;在雌性个体性腺中, WNT4基因的表达量以7月份为最高,显著高于其他月份;其次为5、8月,显著高于6、9月的表达量;5月与8月、6月与9月之间均差异不显著。在雄性个体性腺中,不同月份WNT4的表达量7月8月9月5月6月; 7、8月的表达量均显著高于其他月份, 9月显著高于6月的表达量,与5月差异不显著,5月表达量与6月差异不显著。此外,WNT4基因在精巢的表达量均高于卵巢。原位杂交(ISH)结果显示, WNT4在5—9月雌性皱纹盘鲍性腺的卵母细胞和雄性性腺的结缔组织均有明显的蓝紫色杂交信号。皱纹盘鲍WNT4基因在各个组织均有表达,表明其的表达特点是广泛性的,参与多种组织细胞的生命过程;在不同月份性腺中的表达特征,推测其可能在两性性腺发育过程中发挥作用。 相似文献
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根据已知的β-胡萝卜素酮化酶(β-carotene ketolase,BKT)的cDNA序列设计引物,利用长距离PCR扩增获得了bkt基因的cDNA完整编码片段及基因组DNA片段,并对这些片断进行了序列测定。cDNA和基因组DNA比对结果表明该基因至少包括5个内含子,它们的剪切位点皆符合GU-AG规律。在比对结果中同时还发现一个19bp的短序列重复,该重复序列在bkt的cDNA和基因组DNA上都发生了多次重复,推测在BKT的表达调控中可能具有一定功能。另外,在序列比对过程中还发现本实验所获得的cDNA和基因组DNA序列与前人报道的cDNA序列之间都存在多处单碱基差异和19bp的短序列差异。 相似文献
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对红藻龙须菜(Gracilarialei maneiformis)UDP葡萄糖焦磷酸化酶(UGPase)基因的表达与不同藻株中藻体琼胶产量之间的相关性进行研究。通过PCR扩增的方法得到了龙须菜UGPase的基因序列。该基因cDNA序列的全长为2 200 bp,开放阅读框1 485 bp,编码494个氨基酸;龙须菜UGPase基因的氨基酸序列与其它物种的UGPase氨基酸序列相似性较高;该基因是单拷贝的,缺乏内含子;具有特殊的加尾信号。利用荧光实时定量PCR的方法检测UGPase基因相对表达量。结果表明,该基因的表达与琼胶含量存在显著相关性,即在高琼胶组藻株中的表达量显著高于低琼胶组藻株,对琼胶含量高低具有指示作用,显示了在产业化应用中的潜能。 相似文献
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采用基因测序的方法,对我国海南产的羊鲍和耳鲍两个自然种群的COⅠ和COⅡ基因片段进行了PCR扩增和测序。结果表明,羊鲍和耳鲍COⅠ基因片段的核苷酸序列均为193bp,4种碱基组成非常相似,且其A T的含量也非常相似,分别为45.08%和45.60%。羊鲍和耳鲍COⅠ基因片段的核苷酸序列之间有29bp的差异,其中有8处发生碱基颠换,21处发生碱基转换,差异为15.03%,同源性为84.97%;羊鲍和耳鲍COⅡ基因片段的核苷酸序列均为157bp,羊鲍和耳鲍4种碱基组成差异较大,且其A T的含量也不同,分别为59.24%和55.41%。羊鲍和耳鲍COⅡ基因片段的核苷酸序列之间有19bp的差异,其中3处发生碱基颠换,16处发生碱基转换,达到12.10%的差异,同源性为87.90%。分子变异分析表明羊鲍和耳鲍物种间的变异组成为0.50,变异百分数为100.00,羊鲍和耳鲍物种间的遗传分化显著(FST=1,P<0.001)。 相似文献
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对红藻龙须菜(Gracilaria leimanei formis)UDP葡萄糖焦磷酸化酶(UGPase)基因的表达与不同藻株中藻体琼胶产量之间的相关性进行研究.通过PCR扩增的方法得到了龙须菜UGPase的基因序列.该基因cDNA序列的全长为2 200 bp,开放阅读框1 485 bp,编码494个氨基酸;龙须菜UGPase基因的氨基酸序列与其它物种的UGPase氨基酸序列相似性较高;该基因是单拷贝的,缺乏内含子;具有特殊的加尾信号.利用荧光实时定量PCR的方法检测UGPase基因相对表达量.结果表明,该基因的表达与琼胶含量存在显著相关性,即在高琼胶组藻株中的表达量显著高于低琼胶组藻株,对琼胶含量高低具有指示作用,显示了在产业化应用中的潜能. 相似文献
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皱纹盘鲍(Haliotis discushannai Ino)胚胎RNA分离和cDNA文库构建 总被引：2，自引：0，他引：2
从皱纹盘鲍胚胎样本中分离RNA并构建了cDNA文库。分别收集孵化8、10和12h的皱纹盘鲍胚胎,用抽滤除菌的海水反复悬浮胚胎,将这3个发育阶段的胚胎样本等量混合后用TRIZOL试剂提取总RNA,将提取物用酚氯仿异戊醇再抽提2次,分离获得高质量的总RNA。从总RNA中分离mRNA,构建了皱纹盘鲍混合胚胎的cDNA文库,未扩增胚胎文库的滴度为5.0×106pfu/ml,重组率为94.12%,插入片段均大于400bp,70.6%克隆的插入片段分布在1000—1500bp之间,扩增后的文库滴度为3.06×109pfu/ml。 相似文献
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荧光定量PCR方法分析皱纹盘鲍HSP70在温度胁迫下的表达 总被引：1，自引：0，他引：1
根据皱纹盘鲍(Haliotis discus hannaiIno)HSP70和Actin mRNA序列,设计合成引物,建立了皱纹盘鲍HSP70的荧光定量PCR技术平台,并用于检测皱纹盘鲍在热激处理后不同恢复时间HSP70的转录水平变化。结果表明在热诱导后,肌肉组织HSP70的表达呈时间依赖性,存在先升高后降低的趋势,在热诱导后2h,肌肉HSP70基因的表达量明显升高,是对照组(0h)的15倍,随后HSP70的表达量继续升高,在诱导后12h达到最高值,是对照组的21倍。然后表达量开始回落,至热诱导后96h,HSP70表达量降至初始值,表现出一种瞬时表达的趋势。 相似文献
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为探究BMP-2基因在九孔鲍(Haliotisdiversicolorsupertexta)中的功能,采用cDNA末端快速扩增(RACE)技术从九孔鲍外套膜中获得了BMP-2基因cDNA全长,并用实时荧光定量PCR(qRT-PCR)检测了BMP-2基因在各组织和发育时期的表达水平。结果表明:九孔鲍BMP-2基因cDNA全长2572bp,其中5′非编码区(5′UTR)123bp, 3′非编码区(3′UTR)1150bp,开放阅读框(ORF)为1299 bp,编码432个氨基酸,其分子质量为48.59ku,理论等电点(pI)为9.84;具有N端信号肽(1-39 aa)、TGF-β前肽区域(63-294 aa)和TGF-β成熟肽区域(331-432 aa),以及蛋白酶水解位点RLRR (272-275 aa)和7个保守的半胱氨酸残基,符合TGF-β超家族蛋白典型结构特征。系统进化树结果显示九孔鲍BMP-2基因和耳鲍聚为一支。qRT-PCR结果表明BMP-2基因在九孔鲍的6个组织中均有表达,在足、右侧壳肌、外套膜及肝脏中显著高表达;在检测的7个发育时期均表达,其中在受精卵、4细胞、8细胞、原肠胚、稚鲍时期表达量显著高于卵、幼鲍时期。研究表明BMP-2基因可能在九孔鲍贝壳形成中具有重要作用。 相似文献
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为探究肿瘤易感基因101(简称TSG101)对斑节对虾(Penaeusmonodon)的免疫应答作用,了解在细菌刺激下斑节对虾的机体发生的变化机制,本研究以哈维弧菌(Vibrioharveyi)和金黄色葡萄球菌(Staphylococcusaureus)为实验组,以磷酸缓冲液(PBS)为对照组,通过荧光定量分析展开对斑节对虾对菌刺激的免疫应答作用。结果显示,斑节对虾的TSG101在各组织中均有表达,在肝胰腺中的表达量最高。在金黄色葡萄球菌刺激下,斑节对虾的TSG101在肝胰腺中的表达量与对照组相比呈极显著上调(P0.01),第12小时的TSG101 mRNA的表达量达到最大(为对照组的21.60倍);在鳃中的表达量与对照组相比呈极显著上调(P0.01),第6小时斑节对虾TSG101的表达量达到最大值(为对照组的3.64倍)。在注射哈维弧菌第9小时,肝胰腺中的PmTSG101 mRNA表达量极显著上调(P0.01)且达到最大(为对照组的2.50倍)。实验结果初步表明,斑节TSG101参与斑节对虾的先天免疫反应,在金黄色葡萄球菌和哈维弧菌的刺激的情况下,该基因RNA水平的表达情况发生明显变化。 相似文献
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经济海藻繁育、养殖及综合利用是海洋农牧业及工业的重要组成部分。20世纪经过几代人的努力,我国在海带、紫菜、裙带菜及龙须菜的繁育、养殖关键技术等方面成功取得突破,为这些海藻的产业化提供坚实的保障,为我国成为世界海藻大国奠定了基础。海藻养殖产业为人们提供了食品、藻胶及其它丰富的产品,这包括保健品、功能食品、化妆品及药物等。海藻养殖产业也对人类经济、社会的发展起到重要作用,通过吸收环境中的二氧化碳、氮和磷,为海洋生态环境的改善发挥了重要作用。本文对我国海藻繁育、养殖及综合开发的历程进行简要回顾,对当前我国、中国科学院海洋研究海藻研究与应用进行了总结,对海藻研究发展的未来进行了展望;适应海藻产业从量向质的方向转变,同时兼顾生态环境效益,为我国海藻研发及应用提供参考。 相似文献
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向水体中添加不同浓度的短小芽孢杆菌CGMCC1004（Bacillus pumilus）和胶红酵母菌CGMCC1013（Rhodotorula mucilaginosa）以研究凡纳滨对虾（Litoenaeus vapznamei）体长、体质量、存活率、胃蛋白酶、肝胰腺淀粉酶和肝胰腺脂肪酶的影响，以及需钠弧菌（Vibrio natriegens）的感染效果。结果表明：向水体中添加10^4CFU／mL短小芽孢杆菌能提高对虾体长、存活率，但结果不显著，但对体质量增长率具有显著提高作用；水体中添加10^4CFU／mL短小芽孢杆菌对提高需钠弧菌感染后对虾成活率有一定的提高作用；水体中添加10^4CFU／mL短小芽孢杆菌能显著提高胃蛋白酶活性，但是对肝胰腺淀粉酶活性有一定抑制作用；添加复合菌剂比添加单一菌种的作用要好；亦证明了向水体中添加细菌的方式对凡纳滨对虾的体长、体质量、存活率以及水质指标影响比较小，但是对消化酶具有一定的提高作用。 相似文献
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Vertical and horizontal distribution of meiofauna in mangrove sediments in Transkei, southern Africa
The depth-distribution profiles of meiofauna in four transects in the Mngazana River, Transkei were studied during summer 1980. Highest densities [±1000(100 cm3)−1] were encountered within the top 10 cm of the sediment. Nematodes dominated (80%) and the remainder was made up of ciliates, oligochaetes, gastrotrichs, and low numbers of polychaetes, copepods, kinorhynchs and various crustacean larvae. Among chemical parameters Eh correlated most consistantly with distribution, particularly at the lower tidal levels. Temperature and pH appeared to be of lesser importance. The maximum estimated depth of penetration was on average 72 cm at the HW levels; 32 at MW and 23 at LW. The mean dry biomass was estimated at 1073 mg m−2; 941 mg m−2 and 196 mg m−2 at these tidal levels respectively. The importance of preliminary studies designed to estimate the depth distribution of meiofauna is discussed. 相似文献
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The aim of the present study was to investigate seasonal and spatial patterns of soil oxygen consumption, nitrification, denitrification and fluxes of dissolved inorganic nitrogen (DIN) in a tidal salt marsh of the Lagoon of Venice, Italy. In the salt marsh, intact soil cores including overlying water were collected monthly at high tide from April to October in salt marsh creeks and in areas covered by the dominant vegetation, Limonium serotinum. In May, cores were also collected in areas with vegetation dominated by Juncus maritimus and Halimione portulacoides. In laboratory incubations at in situ temperature in the dark, flux rates of oxygen and DIN were monitored in the overlying water of the intact cores. 15N-nitrate was added to the overlying water and nitrification and denitrification were measured using isotope-dilution and -pairing techniques. The results show that highest soil oxygen consumption coincided with the highest water temperature in June and July. The highest denitrification rates were recorded in spring and autumn coinciding with the highest nitrate concentrations. Soil oxygen consumption and nitrification rates differed between sampling sites, but denitrification rates were similar among the different vegetation types. The highest rates were recorded in areas covered with L. serotinum. Burrowing soil macrofauna enhanced oxygen consumption, nitrification and denitrification in April and May. The data presented in this study indicate high temporal as well as spatial variations in the flux of oxygen and DIN, and nitrogen transformations in the tidal salt marshes of the Venice lagoon during the growth season. The results identify the salt marshes of the Venice lagoon as being metabolically very active ecosystems with a high capacity to process nitrogen. 相似文献
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为评估短角异剑水蚤(Apocyclops royi)作为海水鱼类仔稚鱼的饵料价值和投喂效果,比较分析了其与卤虫无节幼体(Artemia nauplii)的脂肪酸组成及2种生物饵料对克氏双锯鱼(Amphiprion clarkii)稚鱼存活、生长和脂肪酸组成的影响。结果显示,短角异剑水蚤DHA、EPA和ARA含量分别达21.185%、11.088%和3.250%,海水仔稚鱼必需脂肪酸(EFA)总含量高达37.417%,均显著高于卤虫无节幼体。投喂短角异剑水蚤的克氏双锯鱼稚鱼(5~20 d)成活率(80.71%±8.23%)与投喂卤虫无节幼体组(76.30%±7.00%)差异不显著;稚鱼体长(7.75 mm±1.18 mm)、体重(0.0163 g±0.0080 g)和体长特定生长率(3.46%±0.75%)均显著高于卤虫无节幼体投喂组;稚鱼体内DHA(21.843%)、EPA(6.914%)和ARA(2.725%)含量也均显著高于后者。研究表明,短角异剑水蚤适于作为海水鱼类仔稚鱼的生物饵料,在水产养殖中具有广阔的应用前景。 相似文献
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Four species in the genus Navicula were isolated using the serial dilution method. Based on scanning electron microscopy(SEM) and sequence comparisons of two segments of genes(small ribosomal subunit and large subunit of Rubisco), the species were identified as Navicula perminuta, N. pseudacceptata, N. vara, and N. rhynchocephala. Based on phylogenetic analysis and culture trials, there was a close relationship between N. perminuta and N. vara. Growth of these species was evaluated using measurements of optical density at 680 nm(OD680) under various environmental factors. Results showed that the optimum culture conditions were 25℃, 50–100 μmol photons m-2 s-1, pH 8.0, and salinities from 25 to 30. However, the favorable salinity for N. perminuta was surprisingly high at 35. Nutrient requirement analysis demonstrated that growth of Navicula depended on the availability of SiO32-. Their relative growth rates(RGR) peaked at the highest tested level(0.25 mmol/L). The optimal concentrations of NO3- and PO43- were 3.6 mmol/L and 0.18 mmol/L, respectively. Culture of these Navicula species for abalone or sea cucumber aquaculture should take these factors into consideration. 相似文献
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In order to trace their feeding habits, stable carbon and nitrogen isotope ratios (delta15N and delta13C), as well as trace metal concentrations (Zn, Cd, Fe, Cu, Se and Hg) were analysed in the tissues of five commercial shark species from the Celtic Sea: the tope shark Galeorhinus galeus, the black-mouthed catshark Galeus melastomus, the starry smooth hound Mustelus asterias, the spiny dogfish Squalus acanthias and the lesser-spotted dogfish Scyliorhinus canicula. Our results were compared to previously described stomach contents and isotopic composition of potential preys. Isotopic ratio delta15N suggested that tope sharks fed at a higher trophic level (16.7 per thousand in the muscle) than the other species, reflecting its piscivorous diet. The lower values of spiny dogfish (11.6 per thousand in the muscle) might be explained, amongst other things, by either its migratory behaviour or its preference for preys from lower trophic levels. Cd and Hg were correlated with isotopic ratios delta13C and delta15N, and were shown to be diet-related whereas Zn, Fe and Cu seemed much more linked to species-specific metabolism. Although this multidisciplinary approach is revealed as a useful tool for the study of shark ecology, the lack of known trophic fractionation suggests that isotopic data be compared to traditional diet analyses. 相似文献