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利用分子生物学技术分析南海北部神狐海域天然气水合物潜力区HS-373PC岩心表层沉积物中古菌多样性,从沉积物中提取总DNA并扩增古菌16SrRNA基因序列,对克隆文库进行系统发育分析。结果显示所有古菌序列均属于泉古菌(Crenarchaeota)和广古菌(Euryarchaeota)。其中泉古菌以C3为主要类群,另有少量序列属于Marine Benthic Group(MBG)-B,MBG-C,Marine Crenarchaeotic Group I(MGI),Marine Hydrothermal VentGroup(MHVG)和Novel Group of Crenarchaea(NGC);广古菌以MBG-D为主,其它序列分别属于UnclassifiedEuryarchaeotic Clusters-1/2(UEC-1/2)。 相似文献
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研究对2011年7月采自印度尼西亚卡利安达岛近岸热泉的样品,进行了细菌和古菌16S rRNA基因和细菌氢酶基因克隆文库的构建、序列测定和多样性分析。结果表明:热泉系统的细菌和古菌由16个门组成,Proteobacteria为热液流体和沉积物的优势类群,丰度分别为59.5%和73.3%,Cyanobacteria为菌苔的优势类群(丰度,56.5%);具有氨氧化作用的Crenarchaeota为古菌的优势类群。热泉系统中,70%以上的种类与海洋细菌的亲缘关系最近,说明该系统具有海洋特性;约20%的种类与陆地热泉中嗜热或中等嗜热细菌的亲缘关系最近,这些种类可能来源于高温地层内部,并参与了铁氧化还原、氢氧化、硫氧化和硝酸还原等过程。热泉系统中,NAD(P)-关联的双向NiFe-氢酶基因和FeFe-氢酶基因的组成分布也受到温度和盐度分布变化的影响。研究为揭示浅海热液系统提供理论参考。 相似文献
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东太平洋海隆深海热液区沉积物古菌多样性分析 总被引：1，自引：0，他引：1
采用PCR-RFLP方法对东太平洋海隆深海热液区3个站位沉积物中的古菌多样性进行了初步研究.结果显示,从古菌16S rRNA基因文库中随机挑取的296个阳性克隆分属奇古菌门（Thaumarchaeota,47.64%）、广古菌门（Euryarchaeota,44.93%）、泉古菌门（Crenarchaeota,6.77%）和未分类古菌（0.68%）,其中优势菌群为奇古菌门的亚硝化侏儒菌属（Nitrosopumilus,35.47%）和广古菌门的热原体纲（Thermoplasmata,27.03%）,DHVE3、DHVE5、DHVE6、MBGB和MBGE类群在沉积物样品中也均有发现.另外,3个站位沉积物中古菌类群组成存在差异,S5-TVG1站位样品文库的97个古菌克隆分属奇古菌门（49.48%）、广古菌门（49.48%）和泉古菌门（1.03%）,S14-TVG10站位样品文库的103个古菌克隆由奇古菌门（84.47%）和广古菌门（15.53%）组成,S16-TVG12站位样品文库的96个古菌克隆包括广古菌门（71.88%）、泉古菌门（19.79%）、奇古菌门（6.25%）和未分类古菌（2.08%）.研究结果表明,东太平洋海隆深海热液区沉积物中古菌多样性丰富,存在着许多新的古菌菌群;不同站位古菌菌群结构以及多样性存在差异,这与其所处环境的热液活动密切相关. 相似文献
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采用聚合酶链式反应限制性片段长度多态性分析(PCR-RFLP)技术对劳盆地热液区TVG9站位沉积物中细菌、古菌多样性进行了调查,并构建其细菌、古菌种群的16S rRNA基因文库.研究结果表明,该站位细菌包含变形杆菌(Proteobacteria)、硝化螺旋菌(Nitrospira),疣微菌(Verrucomicrobia)等3个类群,其中变形杆菌占据优势地位,由Alphaproteobactria,Gamaproteobactria,Deltaproteobactria等3个亚群组成.古菌包含泉古菌(Crenarchaeota)和广古菌(Euryarchaeota),其中泉古菌占优势,由MG Ⅰ (Marine Group Ⅰ)和MCG(Miscellaneous Crenarchaeotal Group)两类群组成,而广古菌主要由MBGE(Marine Benthic Group E)组成.旨在揭示深海热液区的微生物多样性,为生态环境的研究提供理论支持. 相似文献
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东太平洋中国多金属结核区锰结核样品中微生物群落结构的研究 总被引：1，自引：0，他引：1
通过非培养手段研究了东太平洋中国多金属结核区ES0303站点锰结核样品中的微生物群落结构.细菌16S rRNA基因克隆文库的研究结果表明：结核内细菌种群结构复杂,微生物种类丰富且各种群丰度不一（61个OTUs）,其中变形杆菌类群为优势种群,占所有细菌克隆子比例的64%,且主要分布于β/γ-、α-和δ-等3类变形杆菌（Proteobacteria）亚群之中,占比分别为34%、18%和12%.此外还存在包括酸杆菌（Acidobacteria）,放线菌纲（Actinobacteria）,绿弯菌门（Chloroflexi）,厚壁菌门（Firmicutes）,浮霉菌门（Planctomycetes）等在内的细菌类群的分布,克隆子比例依次为9%、7%、8%、2%和5%.古菌16S rRNA基因克隆文库的研究结果表明：古菌的群落结构单一（仅12个OTUs）,全部是由泉古菌海洋类群I（crenarchaeote marine group I,MGI）组成;其中MGI-η类群最为丰富,达到44%,而MGI-α、MGI-ζ和MGI-ε类群的克隆子比例分别为25%、18%和9%,另外还发现2个新的MGI分类类群.相关克隆子的数据库比对和系统发育树分析表明,并未发现已报道的直接参与铁锰氧化还原相关类群的存在,但它们大多数与来自多金属结核来源或深海来源的不可培养微生物具有较高的同源性.进一步的分析表明,锰结核内存在相当数量的氨氧化菌、硫酸盐还原菌、酸杆菌等能够改变pH值的细菌和古菌类群的存在,意味着它们可能在锰结核的形成过程中起到重要的作用. 相似文献
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西北太平洋沉积物中细菌多样性的研究 总被引：1，自引：0，他引：1
利用提取且纯化的西北太平洋地区深海沉积物DNA为模板,利用细菌通用PCR引物扩增16S rDNA片段,构建其文库,建立阳性克隆子RFLP(Restriction Fragment Length Polymorphism)酶切图谱.据酶切图谱选择部分克隆测序,并与数据库中的序列进行比对.结果表明,测序的27个序列分属于4个类群:变形细菌(Proteobacteria)、绿屈挠菌(Chloroflexi)、浮游霉菌(Planctomycetes)和酸杆菌(Acidobacteria);其中以变形细菌最多,占62.96%. 相似文献
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从南海北部巴士海峡深海沉积物中提取到高质量的总DNA, 通过TA克隆构建了含有23个可操作分类单元(OTU)的16S rRNA基因文库, 选择各OTU中代表性克隆子进行测序与系统发育分析, 结果表明, 南海北部巴士海峡深海沉积物中细菌在系统进化树中至少分属于9个类群: 其中放线菌Actinobacteria, 变形细菌Proteobacteria, 和浮霉菌Planctomycetes为优势种;其他细菌如疣微菌Verrucomicrobia, 鞘脂杆菌Sphingobacteria, 硝化螺旋菌门(Nitrospira), 绿弯菌Chloroflexi, 厚壁菌Firmicute, 酸杆菌Acidobacteria等为非优势种群;另外有两个克隆子属于未知种群.在所获得的23个代表克隆子序列中,有11个序列与已知细菌的同源性≤95%, 占到了所有序列的48%, 这一结果说明在南海北部巴士海峡海区具有非常丰富的微生物多样性, 这一海区蕴含着大量未知的微生物资源, 因而值得进行进一步的研究探索. 相似文献
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胶州湾浮游桡足类18S核糖体RNA基因(18S rDNA)扩增及序列变异初步研究 总被引：3，自引：0，他引：3
采用PCR扩增、文库构建、限制性片段长度多态性分析、序列分析和系统学分析等方法，初步研究了夏季胶州湾上层海水浮游桡足类核糖体小亚基RNA基因(18S rDNA)约1．5kb片段的序列变异。从浮游生物混合DNA中选择性扩增桡足类18S rDNA，建立桡足类18S rDNA变异类型文库，并从文库中随机挑选的30个克隆进行分析。结果表明，Vsp Ⅰ限制性内切酶能将这些克隆分成频率分别为0．17、0．23和0．6的3种操作分类单元(OTUs)，遗传多样性指数达到0．95。3条OTU代表克隆序列与甲壳纲桡足亚纲核苷酸差异数在75．4—97．8之间，而与其他亚纲的差异都高于100。3条OTU代表克隆序列均属于桡足亚纲，其中，AY437861和AY437862属于哲水蚤目。3条OTU代表克隆序列可分为2个高变异区和3个相对保守区，其GC％分别为47．37％、48．16％和48．57％。研究结果表明，混合DNA提取方法简单，设计的引物可选择性地扩增浮游桡足类18S rDNA，根据18S rDNA序列序列变异描述浮游桡足类多样性是可行的。研究结果也为在浮游桡足类分类中引入18S rDNA序列奠定了基础。 相似文献
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南沙海区沉积物中细菌和古细菌16S rDNA多样性的研究 总被引：10，自引：1，他引：10
采用细菌16SrDNA通用引物和PCR扩增等方法，构建了南海南沙海区沉积物16S rDNA文库，并通过RFLP酶切分型对所获得的70个克隆进行测序。从国际分子生物学数据库中调取相关序列，以PAUP4．0分析软件构建序列同源性矩阵和系统发育树图。结果表明，与细菌文库中克隆相似的微生物属于4个细菌类群：变形细菌(Proteobacteria)(60％)、革兰氏阳性细菌(Gram-positivre bacteria)(13％)、浮霉菌(Planetomycetes)(10％)和无硫绿细菌(Green nonsulfur bacteria)(6％)，其中变形细菌(包括δ-、γ-和α-变形细菌)是明显的优势类群。采用Blast程序对所有序列基因数据库进行搜索，发现只有一个克隆与已知序列完全相似，说明文库具有极高的多样性。但是对古细菌文库中所获得的克隆子进行二级结构和序列特征分析的结果表明，这些克隆子均为海洋未获培养的细菌，因此在作者的文库中并未有古细菌的发现。 相似文献
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Lars-Göran Danielsson 《Marine Chemistry》1980,8(3):199-215
Results of trace-metal analyses of water samples obtained during a cruise with the Soviet R.V. “Akademik Kurchatov” in the Indian Ocean are presented. The determinations were performed on board with atomic absorption spectrophotometry after a two-stage dithiocarbamate—Freon extraction procedure. Trace-metal concentrations found are in the same range as those found recently for similar open-ocean areas by other workers. The values for lead and zinc are probably high due to contamination. Vertical profiles indicate biogenic processes as controlling factors for the increase of cadmium, copper and nickel concentrations with depth. Iron shows an irregular depth distribution as a result of large random variations in concentration. 相似文献
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I. D. Marsden 《新西兰海洋与淡水研究杂志》2013,47(2):359-370
Paphies donacina (Spengler, 1793) populations were surveyed at 11 low tide sites on surf beaches along Pegasus Bay, Canterbury, New Zealand, during summer 1998. Random sampling was not feasible. At the non‐random sites chosen the average number of tuatua per 5 m of shoreline ranged between 0.1 and 62. Total wet weight biomass m‐2 was highest at the southern sites in the Bay. There were site‐related differences in length frequency distributions of tuatua populations. Northern populations included a wide length range and southern populations were dominated by larger bivalves. Average shell length increased significantly with distance south, being close to 40 mm at Waikuku and 80 mm at Taylors Mistake. The shell length: width and weight relationships were similar for tuatua collected over the whole geographic range. Average dry weight condition index varied significantly between sites (ANOVA F= 23.3, d.f. = 10, 329) depending on the length distribution of the contributing population. Where populations included a wide length range the condition index was positively correlated with shell length but in populations dominated by larger bivalves there was either no relationship or a negative relationship with shell length. Juvenile tuatua were found at average densities between 81 and 1200 m‐2 at all sites except Taylors Mistake. The mean length of recruits ranged from 2.2 to 3.1 mm and shell length was independent of both juvenile and adult density. These results are discussed in relation to the environmental and other factors thought to influence population structure and recruitment of tuatua in Pegasus Bay. 相似文献
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Tautog, Tautoga onitis, is an abundant species of fish in estuaries of the northeastern United States. Planktonic tautog larvae are abundant in summer in these estuaries, but there is little information on rates of growth of tautog larvae feeding on natural assemblages of food in the plankton. We examined abundance and growth of larval tautog and environmental factors during weekly sampling at three sites along a nearshore‐to‐offshore transect in Buzzards Bay, Massachusetts, USA during summer 1994. This is the first study of a robust sample size (336 larvae) to estimate growth rates of field‐caught planktonic tautog larvae feeding on natural diets, using the otolith daily‐growth‐increment method. The study was over the entire summer period when tautog larvae were in the plankton. The sampling sites contrasted in several environmental variables including temperature, dissolved oxygen (DO), and chlorophyll a concentration. There was a temporal progression in the abundance of tautog larvae over the summer, in relation to location and temperature. Tautog larvae were first present nearshore, with a pronounced peak in abundance occurring at the nearshore sites during the last 2 weeks in June. Larvae were absent at this time further offshore. From late June through August, larval abundance progressively decreased nearshore, but increased offshore although never approaching the abundance levels observed at the nearshore sites. The distribution and abundance of tautog larvae appeared to be related to a nearshore‐to‐offshore seasonal warming trend and a nearshore decrease in DO. Otoliths from 336 larvae ranging from 2.3 to 7.7 mm standard length had otolith increment counts ranging from 0 to 19 increments. Growth of larval tautog was estimated at 0.23 mm·day?1, and length of larvae prior to first increment formation was estimated at 2.8 mm indicating that first increment formation occurs 3–4 days after hatching at 2.2 mm. Despite spatial and temporal differences in environmental factors, there were no significant differences in growth rates at any of three given sites over time, or between sites. Because larval presence only occurred at a narrow range of temperature (17–23.5 °C) and DO (6.5–9.3 mg·l?1), in situ differences in growth did not appear to be because of differences in larval distribution and abundance patterns relative to these parameters. 相似文献
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A method for the determination by atomic absorption spectrophotometry of six major inorganic components of the organic particulate matter in seawater is described. Particles were formed by shaking aliquots of filtered seawater. The yield of aggregates varied greatly in replicate samples. The major factors in the variability of the analyses are the high and variable filter blank values for the elements of interest. 相似文献
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Klaus Kremling 《Marine Chemistry》1983,13(2):87-108
In June 1981, dissolved Zn, Cd, Cu, Ni, Co, Fe, and Mn were determined from two detailed profiles in anoxic Baltic waters (with extra data for Fe and Mn from August 1979). Dramatic changes across the O2H2S interface occur in the abundances of Cu, Co, Fe, and Mn (by factors of ?100). The concentrations of Zn, Cd, and Ni at the redox front decrease by factors between 3 to 5.Equilibrium calculations are presented for varying concentrations of hydrogen sulfide and compared with the field data. The study strongly supports the assumption that the solubility of Zn, Cd, Cu, and Ni is greatly enhanced and controlled by the formation of bisulfide and(or) polysulfide complexes. Differences between predicted and measured concentrations of these elements are mainly evident at lower ΣH2S concentrations.Cobalt proved to be very mobile in anoxic regions, and the results indicate that the concentrations are limited by CoS precipitation. The iron (Fe2+) and manganese (Mn2+) distribution in sulfide-containing waters is controlled by total flux from sediment-water interfaces rather than by equilibrium concentrations of their solid phases (FeS and MnCO3). The concentrations of these metals are therefore expected to increase with prolonged stagnation periods in the basin. 相似文献
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P.N. Froelich L.W. Kaul J.T. Byrd M.O. Andreae K.K. Roe 《Estuarine, Coastal and Shelf Science》1985,20(3):239-264
Concentrations of dissolved nutrients (NO3, PO4, Si), germanium species, arsenic species, tin, barium, dimethylsulfide and related parameters were measured along the salinity gradient in Charlotte Harbor. Phosphate enrichment from the phosphate industry on the Peace River promotes a productive diatom bloom near the river mouth where NO3 and Si are completely consumed. Inorganic germanium is completely depleted in this bloom by uptake into biogenic opal. The ratio taken up by diatoms is about 0·7 × 10?6, the same as that provided by the river flux, confirming that siliceous organisms incorporate germanium as an accidental trace replacement for silica. Monomethylgermanium and dimethylgermanium concentrations are undetectable in the Peace River, and increase linearly with increasing salinity to the seawater end of the bay, suggesting that these organogermanium species behave conservatively in estuaries, and are neither produced nor consumed during estuarine biogenic opal formation or dissolution. Inorganic arsenic displays slight removal in the bloom. Monomethylarsenic is produced both in the bloom and in mid-estuary, while dimethylarsenic is conservative in the bloom but produced in mid-estuary. The total production of methylarsenicals within the bay approximately balances the removal of inorganic arsenic, suggesting that most biological arsenic uptake in the estuary is biomethylated and released to the water column. Dimethylsulfide increases with increasing salinity in the estuary and shows evidence of removal, probably both by degassing and by microbial consumption. An input of DMS is observed in the central estuary. The behavior of total dissolvable tin shows no biological activity in the bloom or in mid-estuary, but does display a low-salinity input signal that parallels dissolved organic material, perhaps suggesting an association between tin and DOM. Barium displays dramatic input behavior at mid-salinities, probably due to slow release from clays deposited in the harbor after catastrophic phosphate slime spills into the Peace River. 相似文献
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18.
《Marine Policy》2015
Scholars and fishermen alike view the privatization of fishing rights as a fundamental driver of social change in fishing communities. This article presents the results of a mixed-methods ethnographic study in Kodiak, Alaska, exploring how fisheries privatization processes remake fishery systems. Findings from this study suggest that a diverse range of fishery participants share core values about the social dimensions of fishery systems. Support or opposition to past privatization processes tended to be articulated in reference to how these core values (e.g., hard work, opportunity, and fairness) were perceived to have been strengthened or eroded by such processes. Data from this study suggest that while still widespread in the Kodiak fishing community, core social values in fishing may be changing as a result of privatization processes. Although ethnographic and survey data showed a range of perspectives on the effects of privatization on fishing and the Kodiak community, study participants tended to talk about privatization as a significant change that had divisive, negative impacts in the community. Crew members and the next generation of fishermen were identified as disproportionately affected by privatization processes. Ethnographic data detail important shifts in the power, status, and livelihoods of crew members. Nearly all Kodiak fishery participants interviewed expressed concern about the future of fisheries access in the community for the next generation, in large part because of the substantial financial barriers to entry generated by privatization of fisheries access. Many discussed the need for more entry-level opportunities necessary for access in all fisheries. 相似文献
19.
Mercury, cadmium, arsenic, and antimony were analyzed in cores sampled on the Azores-Iceland Ridge. High values of 780 g · kg–1 for Hg, 1.7 g · g–1 for Cd, 87 g · g–1 for As, and 8.1 g · g–1 for Sb occur in the rift valley and transform faults. These enrichments, strictly linked to the ridge, could not have an allochtonous origin. A local hydrogenous flux may explain this phenomenon. These metallic enrichments may be connected to a hydrothermal activity extended between 43° N and 47° N. 相似文献
20.
Maryd De Wemton John S. Clayton Rohan D. S. Wells Chris C. Tanner Suzanne T. Miller 《新西兰海洋与淡水研究杂志》2013,47(2):145-151
The submerged vegetation of Lakes Sumner, Marion, Katrine, Taylor, and Sheppard was surveyed in May 1987. These high‐altitude lakes lie at c. 600 m a.s.l., within the largely unmodified upper Hurunui catchment. Submerged vegetation was diverse and included numerous short shallow‐water species, dense swards of Isoetes alpinus, low covers of taller native vascular plants, and charophyte meadows beyond the depth limit of vascular plants to a maximum of 15 m. A sparse deepwater bryophyte community was observed from 11 to 32 m depth in Lake Sumner. Displacement of native vegetation by dense growths of the adventive oxygen weed Elodea canadensis over mid‐depths of 3–6 m was noted in all lakes, except Lake Marion. 相似文献