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1.
Gene specific primers and DNA probe were designed based on the sequence of 18S rDNA cloned from the red tide alga Thalassiosira rotula. A real-time fluorescent quantitative PCR (RFQ-PCR) method was developed for quantitative detection of T.rotula. The RFQ-PCR assay data showed that the results obtained with the RFQ-PCR quite good agreement with those with the light microscope (LM) counting method, which suggested that the RFQ-PCR could be a useful method for red tide alga detection. 相似文献
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A loop-mediated isothermal amplification (LAMP) assay was designed and evaluated for rapid detection of the toxic microalgae Alexandrium catenella and A.minutum,which can produce paralytic shellfish poisoning (PSP).Two sets of four specific primers targeting these two species were derived from the sequence of internal transcribed spacer (ITS) of ribosomal DNA.The method worked well in less than an hour under isothermal conditions of 65 C.LAMP specificity was validated in closely related algae as a comparison,suggesting the strict specificity of the LAMP primers.Two visual inspection approaches were feasible to interpret the positive or negative results.The detection limits of A.catenella and A.minutum samples using the LAMP assay were found to be 5.6 and 4.5 pg DNA,respectively.The sensitivity of this LAMP assay was 10 or 100-fold higher than Polymerase Chain Reaction (PCR) method in detecting the two microalgae.These characteristics of species specificity,sensitivity,and rapidity suggest that this method has the potentiality in the monitoring of red tide caused by A.catenella and A.minutum. 相似文献
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ZHANG Lina WANG Mingyi CONG Dianxia DING Shuyan CONG Rinan YUE Jinyong GENG Jianli HU Chengjin 《海洋学报(英文版)》2018,(4)
Vibrio vulnificus is an estuarine bacterial pathogen for human.The rapid,specific and sensitive detection of V.vulnificus is urgently needed for early disease diagnosis and timely treatment of V.vulnificus infection.In the study,a loop-mediated isothermal amplification(LAMP) technique was developed for V.vulnificus detection with a set of primers,composed of two out primers and two inner primers targeted to vvh A gene.The optimal amplification temperature was 63°C and the reaction only took 35 min.The amplification products could not only be detected by agarose gel electrophoresis with ladder-like pattern bands,but also could be visualized using calcein with naked eye directly.Forty-five strains were tested for the specificity of LAMP assay,and all the V.vulnificus strains were identified correctly while other strains were negative results.The sensitive of the new LAMP assay was 100-fold more sensitive than the conventional PCR.Meanwhile,all the V.vulnificus strains were detected correctly in spiked,clinical and environmental samples by the new LAMP assay.Compared with other well-known techniques,the new LAMP assay targeted to vvh A gene was extremely rapid,simple,sensitive and specific for V.vulnificus identification. 相似文献
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A loop-mediated isothermal amplification (LAMP) assay was designed and evaluated for rapid detection of the toxic microalgae Alexandrium catenella and A. minutum, which can produce paralytic shellfish poisoning (PSP). Two sets of four specific primers targeting these two species were derived from the sequence of internal transcribed spacer (ITS) of ribosomal DNA. The method worked well in less than an hour under isothermal conditions of 65℃. LAMP specificity was validated in closely related algae as a comparison, suggesting the strict specificity of the LAMP primers. Two visual inspection approaches were feasible to interpret the positive or negative results. The detection limits of A. catenella and A. minutum samples using the LAMP assay were found to be 5.6 and 4.5 pg DNA, respectively. The sensitivity of this LAMP assay was 10 or 100-fold higher than Polymerase Chain Reaction (PCR) method in detecting the two microalgae. These characteristics of species specificity, sensitivity, and rapidity suggest that this method has the potentiality in the monitoring of red tide caused by A. catenella and A. minutum. 相似文献
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Partial rDNA sequences of Prorocentrum minimum and Takayama pulchella were amplified,cloned and sequenced,and these sequence data were deposited in the GenBank.Eight oligonucleotide probes(DNA probes)were designed based on the sequence analysis.The probes were employed to detect and identify P.minimum and T. pulchella in unialgal and mixed algal samples with a fuorescence in situ hybridization method using flow cytometry.Epifluorescence micrographs showed that these specific probes labeled with fluorescein isothiocyanate entered the algal cells and bound to target sequences,and the fluorescence signal resulting from whole-cell hybridization varied from probe to probe.These DNA probes and the hybridization protocol we developed were specific and effective for P.minimum and T. pulchella,without any specific binding to other algal species.The hyrbridization efficiency of difierent probes specific to P.minimum was in the order:PMl8S02＞PM28S02＞PM28S01＞PM18S01,and that of the probes specific to T. pulchella was TP18S02＞TP28S01＞TP28S02＞TP18S01.The djfferent hybridization efficiency of the DNA probes could also be shown in the fuorescent signals between the labeled and unlabeled cells demonstrated using flow cytometry.The DNA probes PM18S02,PM28S02,TPl8S02 and TP28S01,and the protocol,were also useful for the detection of algae in natural samples. 相似文献
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CHEN Guofu WANG Quanfu ZHANG Chunyun ZHANG Baoyu WANG Guangce LU Douding XU Zhong YAN Peishen 《海洋学报(英文版)》2013,32(2):66-75
Harmful algal blooms recently have been under the spotlight throughout the world, because of their negative impact on the marine environment, aquaculture, fisheries as well as public health. The development of methods for rapid and precise identification and quantification of causative species is essential for the warning and monitoring of blooms, among which the techniques based on taxonomic probes are the most favored. In this study, two harmful algae, i.e., Prorocentrum minimum and Karenia mikimotoi were taken into consideration. The partial large subunit rDNA (D1-D2) of both species were firstly PCR-amplified, cloned and sequenced. The obtained sequences were then introduced to carry out alignment analysis for gene specific regions. Three respective candidate probes for each species were designed and used to screen the optimal probe by performing fluorescence in situ hybridization (FISH) tests. The results showed that the probes Pmin0443 and Kmik0602 displayed the best hybridization for P. minimum and K. mikimotoi, respectively. Both the specific (taxonomic) (Pmin0443 and Kmik0602) and the control probes (UniC0512 and UniR0499) were used for cross-reactivity tests with other microalgae in our laboratory. The probes Pmin0443 and Kmik0602 are specific and could be served as taxonomic probes introduced into the techniques targeting rRNA, such as FISH, sandwich hybridization, and DNA-microarray assay of P. minimum and K. mikimotoi in the future. Finally, FISH analyses with both probes were performed on the simulated field samples. The probes could hybridize exclusively with the target cells well, and no significant difference (p >0.05) was observed in the cell densities of the samples determined by FISH and light microscopy (LM). All suggest that the probes are specific and could be introduced into FISH for the monitoring of both harmful algae. 相似文献
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The in vitro acute cytotoxicity of the neonicotinoid insecticide acetamiprid to FG cell line, derived from the gill of flounder Paralichthys olizaceus, was tested by the three widely used endpoint bioassays-neutral red （NR） assay, tetrazolium （MTT） assay and cell protein assay. It was found that acetamiprid was increasingly toxic to FG cells at concentrations of 1 μg/cm^3 or above, and the inhibitory concentration 50% values for NR, MTF, and cell protein assays were 38.38, 36.27 and 32.03 μg/cm^3, respectively. This appeared to be the first report on the in vitro cytotoxicity of acetamiprid to non-mammalian vertebrate cells. Ultrastructural examination revealed that for the cells exposed to 60 μg/cm^3 acetamiprid for 48 h, their mitochondria were severely damaged with the cristae swelled up or disrupted, while their nuclei and rough endoplasmic reticlum （RER） appeared to be still normal. This suggests that mitochondria are possibly the primary target of acetamiprid. 相似文献
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Through exploring the microsatellite primers from the random genome sequences of Chinese shrimp (Fenneropenaeus chinensis), some microsatellite primers were obtained with rich polymorphic genetic information, and a triplex PCR was established using three primers (RS1101, RS0683 and H081 primers). By adjusting the final concentration of Mg2 , dNTP and primers, and using a touch-town PCR program, the optimum amplification parameters of PCR system were obtained, which could successfully amplify the three primers in a PCR reaction. In the denatured PAGE gel, the amplified DNA fragments of three primers RS1101, RS0683 and H081 could be easily identified each other. For the triplex PCR system, the PPE (probabilities of paternity exclusion) is 0.967 9, and the DP (discrimination power) is 0.999 327. Using the triplex PCR to test ten individuals of a parentage and their parents, an individual was excluded from the parentage in all of the three microsatellite loci, which might be mixed into the parentage for some unknown reason such as factitious misplay. The triplex PCR will be of great practical value in identifying the parentages of F. chinensis. 相似文献
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从湖南常德某养殖场死亡的斑点叉尾（Ictalunes punctatus）肝脏、肾脏、腹水及血水中分离到一株致病性菌株zy02。对该菌进行了形态特征观察、理化特性测定及分子生物学方法鉴定,用PCR方法同时扩增其16S rDNA和gyrB基因,分析了16S rDNA和gyrB两种基因序列的同源性,并构建了系统发生树。经生理生化测定和16S rDNA与gyrB基因序列分析,zy02株为中间气单胞菌。人工感染该菌后发病鱼表现为与自然发病类似症状,且从组织中再分离的细菌特性与原感染菌相同。腹腔注射后该菌株对斑点叉尾的半致死浓度为3.89×106CFU/mL。菌株zy02对多西环素、庆大霉素及左氧氟沙星等高度敏感;对红霉素中度敏感;对阿莫西林、磺胺异噁唑、克林霉素及利福平等5种药物耐药。本研究为斑点叉尾该病防控提供了理论依据。 相似文献
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为探讨迟缓爱德华菌(Edwarsiellatarda)入侵途径,建立感染模型,作者通过电转化法构建GFP标记的迟缓爱德华菌EtMc1512(质粒PMDpp-EGFP),实验设立浸泡组、腹腔注射组和肌肉注射组,感染后采集各组实验诸氏鲻虾虎鱼(Mugilogobius chulae)血液、鳃、肝脏、肠、肌肉,培养法统计分析各组织中的荧光细菌数;浸泡组取样时间为0、2、4、6、8、12、24 h,腹腔注射组和肌肉注射组取样时间为6、12、24、48、72、96h。结果显示,构建的EtMc1512-GFP具有较强荧光,GFP标记前后菌株毒力基因(citC、mukF、esrB、katB、fimA、gadB)检测结果均为阳性。浸泡感染后实验鱼各组织内的荧光菌随时间表现为先升后降的趋势,最高菌量出现在肠道(2.51×106CFU/g),其次为鳃(4.19×104CFU/g)、血液(1.65×104CFU/g),肠道荧光菌显著高于其他组织(P0.05);腹腔注射感染后肝脏(4.55×106CFU/g)和血液(4.65×106CFU/g)菌量最高;肌肉注射感染后肌肉在48h首先检出荧光菌,血液(2.93×104 CFU/g)菌量最高。结果表明,肠道、肝脏和肌肉分别是迟缓爱德华菌浸泡感染、腹腔注射感染和肌肉注射感染诸氏鲻虾虎鱼的主要组织器官,在自然条件下迟缓爱德华菌经口感染诸氏鲻虾虎鱼风险较高。 相似文献
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为探究棕点石斑鱼(Epinephelusfuscoguttatus)在循环水养殖模式中的生长及养殖水体与石斑鱼肠道的菌群特征, 51 000尾平均体质量为(13.72±0.51) g、平均体长为(8.90±0.66) cm的棕点石斑鱼苗被随机平均分配至6个直径为8m的PE养殖水槽中,通过循环水设备进行封闭式养殖。结果显示:经过12个月的养殖,棕点石斑鱼的成活率为83.2%±7.6%,体质量为(487.32±12.68) g、体长为(31.24±1.22) cm,平均日增质量为1.30 g。采取16S rRNA高通量测序技术,定期检测养殖水体和棕点石斑鱼肠道菌群特征。结果显示:循环水养殖系统和棕点石斑鱼肠道中的菌群结构都相对稳定,没有表现出明显的季节差异;水体和棕点石斑鱼肠道的菌群具有一定的关联性,二者之间共有的OTUs(Operational Taxonomic Units)为2259个,主要为发光杆菌属(Photobacterium)和弧菌属(Vibrio)等。水体和肠道样品中还含有大量的特异OTUs,其中棕点石斑鱼肠道中检测出19838个特异性OTUs,主要是慢生根瘤菌属(Brad... 相似文献
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在保守序列高度相似的细菌鉴定中,单独使用16S rDNA/RNA序列进行比对和构建进化树通常无法准确鉴定到种,需要增加测序基因数并对多基因进行分析。为实现快速鉴定,课题组对16S与gyrB基因联合建树的方法进行了研究,将海洋来源的一株杆菌,分别用通用引物扩增16S和gyrB基因并测序,在GeneBank进行序列比对后,选择各菌种保藏中心16S和gyrB基因均相似的菌株,取16S和gyrB基因序列,采用Paup*4.0构建进化树。使用16S与gyrB拼接序列构建的进化树中属于同一种的菌株均很好的聚合在一枝,种间分枝自展值均高于98,分类结构准确,筛选得到的杆菌与地衣芽胞杆菌(Bacilluslicheniformis)聚合在一枝,自展值为100,鉴定为地衣芽胞杆菌。经生理生化试验验证,该菌株与地衣芽胞杆菌特征完全一致,使用16S和gyrB基因联合建树得到的鉴定结果准确且快速简便。 相似文献
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我们通过荧光染色、自身基因组原位杂交（Self-GISH）和多色荧光原位杂交（FISH），首次研究了棘头梅童鱼（Richardson，1844）的核型特征。雌性核型有24对端部着丝粒染色体（2n=48a，NF=48），而雄性核型包含22对端部着丝粒染色体，2条端部着丝粒染色体单体和1条中间着丝粒染色体（2n=1m+46a，NF=48）。雌性和雄性核型之间的差异表明，棘头梅童鱼的性染色体系统为X1X1X2X2/X1X2Y型，其中Y为雄性中特有的中间着丝粒染色体。三色FISH结果显示，5S rDNA和18S rDNA位点定位在最大的端着丝粒染色体（X1）以及Y染色体的短臂；X1染色体上有一个特异的臂间端粒信号（ITS），与5S rDNA位点部分重叠。Self-GISH结果显示，在推定的性染色体DNA重复序列聚集。根据实验结果我们提出关于棘头梅童鱼Y染色体起源的假说：Y染色体起源于祖先核型（2n=48a）中的两条端部着丝染色体融合，并且在此过程中伴随着片段缺失。本研究首次在石首鱼科中描述了异形的性染色体，将为其他石首鱼的性染色体研究提供线索。 相似文献
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从发病死亡的养殖太平洋双色鳗鲡(Anguilla bicolor pacifica)肝脏中分离到一株优势菌AMSH1,为研究其种属、毒力及中药敏感性,结合BIOLOG微生物鉴定系统和16S r DNA序列分析对该菌株进行鉴定,并通过人工回归感染试验确定其致病性。此外,还研究了10味中药单用、10种双联用和4种三联用对该菌株的体外抑菌作用。结果显示该菌株为类志贺邻单胞菌(Plesiomonas shigelloides)。经人工腹腔注射感染健康太平洋双色鳗鲡,证实该菌具有致病性,半致死量LD50为3.2×105CFU/g。药敏试验结果表明,10味中药均有较好的抑菌效果,其中五倍子(Galla chinensis)、丁香(Eugenia caryophllata)和生地榆(Sanguisorba officinalis)的效果最好,7种双联用复方和1种三联用复方均具有协同抑菌作用。本次引起太平洋双色鳗鲡发病的病原为类志贺邻单胞菌,该菌对太平洋双色鳗鲡的致病性及其中药药敏的研究属首次报道。建议选用含五倍子的中药双联用复方或三联用复方进行防治,皆绿色环保。 相似文献
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根据爱德华氏菌(Edwardsiella)的16S rDNA基因序列设计一对特异性引物,用二温式PCR对6株爱德华氏菌均扩增出与预期大小相一致的576 bp产物,而对嗜水气单胞菌(Aeromonas hydrophila)、温和气单胞菌(Aeromonas sobria)、荧光假单胞菌(Pseudcmonas fluoroscercs)、柱状屈挠杆菌(Cytophaga columnaris)、链球菌(Streptococcus)、葡萄球菌(Staphylococci)、弧菌(Vibrio)、大肠杆菌(Escherichia colibacillus)和沙门氏菌(Salmonella)等10种病原体的扩增,结果全为阴性。该二温式PCR可以检测到1 pg的爱德华氏菌DNA模板和48个菌体。本实验建立的二温式PCR为爱德华氏菌病的早期诊断与有效的防治提供了快速检测方法,对水产品的食品安全有重要的意义。 相似文献
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自1997年球形棕囊藻(Phaeocystis globosa)赤潮首次在我国南海海域暴发以来,该赤潮在我国南海和渤海的多个海域频繁暴发,表明球形棕囊藻在我国海域的分布比较广泛。尽管如此,在此之前开展的分类和生态调查研究均未发现我国海域球形棕囊藻的存在。近年来基于分子标记扩增和高通量测序的宏条形码分析检测到了球形棕囊藻,显示出宏条形码分析对球形棕囊藻鉴定的优势。然而,由于包括球形棕囊藻在内的定鞭藻的18S rDNA序列具有较高的G(Guanine,鸟嘌呤)C(Cytosine,胞嘧啶)含量等特点,导致针对球形棕囊藻的宏条形码分析结果在很大程度上依赖分子标记的选择或PCR扩增引物的选择。以青岛栈桥海域样本为研究对象,评估了扩增通用分子标记18S rDNA V4的两套常用PCR引物(即Stoeck引物和Song引物)对球形棕囊藻的宏条形码分析结果的影响,并利用Song引物对青岛近海2021年冬季突发性球形棕囊藻赤潮样本开展了宏条形码分析。分析发现不同引物对定鞭藻门物种的分析结果具有显著影响。利用Stoeck引物的宏条形码分析没有获得任何对应的定鞭藻的ASV(ampliconsequence... 相似文献
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抗生素的滥用是当前水产养殖业发展及食品安全面临的重大威胁。贻贝体内含有丰富的附生菌群,但目前尚不清楚贻贝附生菌群在抗生素残留背景下的动态变化和耐受性特征。为此进行了厚壳贻贝中抗生素耐受细菌多样性研究。将厚壳贻贝暴露于含有青霉素、链霉素和卡那霉素的养殖水体中,之后采用超声法获取含贻贝软体部组织表面附着菌群的超声液,经Zobell 2216E液体培养基培养后,将组织超声液和培养液一并经16S rDNA高通量测序来分析厚壳贻贝微生物的群落组成。结果表明,超声处理后获得的微生物主要为拟杆菌门(Bacteroidetes)、变形菌门(Proteobacteria)和疣微菌门(Verrucomicrobia)。多重抗生素的处理可以显著下降贻贝体内微生物的OTU数,对微生物群落结构有明显影响。经264h恢复养殖后,在门水平上观察到贻贝体内微生物群落可以恢复重建,表明其具有一定的韧性。研究结果将为今后进一步探索宿主相关微生物群落构建机制及特殊抗性微生物奠定基础。 相似文献
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滤食性贝类在生态系统中可通过自身生理活动促进系统的物质循环和能量流动,进而影响养殖环境。为从养殖系统底质环境角度为综合养殖系统优化提供依据,建立了4个实验生态系统,即在三疣梭子蟹-日本囊对虾养殖系统中混养3个不同密度的缢蛏(由低到高分别表示为PMB1,PMB2,PMB3),并以三疣梭子蟹-日本囊对虾养殖系统(PM)为对照。通过对不同养殖系统底泥理化性质及小型底栖动物丰度、生物量的比较分析,探究缢蛏不同混养密度对养殖系统底质环境的影响。结果显示,总体而言,试验期间缢蛏高密度混养系统PMB3底泥pH与氧化还原电位(ORP),显著高于其他系统,而底泥有机质含量显著低于其他系统。从小型底栖动物群落物种组成来看,不同养殖系统中线虫在丰度上占主要优势,占总丰度的35.9%~42.7%;介形类在生物量上占最大优势,占总生物量的74.2%~81.1%,PMB3总丰度和总生物量显著高于其他系统。较高混养密度下,缢蛏能通过滤食残饵、粪便等有机物减少底泥有机物质的积累,改善底质环境,提高小型底栖动物丰度和生物量。本试验条件下,根据养殖系统底质环境变化特征,缢蛏放养密度34.7×104 ind./hm2为最优放养密度。 相似文献