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1.
采用RT-PCR及RACE法,分离、克隆鳜鱼β-肌动蛋白基因cDNA全序列,再用基因组步行法(Genome Walker)克隆鳜鱼β-肌动蛋白基因5'调控区.序列分析结果表明,鳜鱼β-肌动蛋白基因全长1897bp,其中5'-UTR长94bp,3'-UTR长675bp,编码区长1128bp,编码375个氨基酸.将所得序列与其它动物类群的β-肌动蛋白基因序列进行比较分析显示,鱼类、两栖类、鸟类、哺乳类等不同类群脊椎动物B-肌动蛋白氨基酸序列同源性均在96%以上,说明该基因在生物进化过程中高度保守.通过鳜鱼与其它脊椎动物β-肌动蛋白基因的核苷酸序列构建的进化树显示,脊椎动物β-肌动蛋白聚类成3个分支,鱼类β-肌动蛋白基因形成一个独立的分化群,说明鱼类β-肌动蛋白基因起源于-个共同祖先.克隆得到的鳜鱼β-肌动蛋白基因5'侧翼序列长1399bp,对其进行序列分析,在其起始密码字ATG上游200bp范围内发现含有CAAT box、CC(A/T)6GG(CArG box)、TATA box对转录调控起重要作用的顺式元件,同时在侧翼区也发现含有GC box、MYOD、YY1、SP1、GATA等多个潜在调控元件.鳜鱼β-肌动蛋白基因5'侧翼序列的克隆成功,为今后转基因鳜鱼的研究工作奠定了基础.  相似文献   

2.
李彬  景斐  武敏敏  张建设 《海洋与湖沼》2017,48(5):1060-1070
热休克蛋白70(HSP70)是生物体内一种重要的机体与细胞保护性蛋白。本文利用RT-PCR以及RACE技术首次克隆获得太平洋真宽水蚤(Eurytemora pacifica)HSP70简称Ep.HSP70 c DNA的全长序列,序列全长为2252bp(KY807149),开放阅读框(ORF)长1947bp,编码649个氨基酸,5′端99bp,3’端206bp;预测蛋白分子量为70.81k Da,等电点为5.16,为一种亲水性蛋白,不存在信号肽及跨膜区,含有丰富的α螺旋结构(37.60%),β折叠(18.80%)。同源氨基酸序列比对发现,与其他甲壳动物的同源基因保守性较高,尤其是HSP70家族典型的结构位点序列在甲壳类动物中具有高度保守性。系统进化分析表明,太平洋真宽水蚤和安氏伪镖水蚤(Pseudodiaptomus annandalei)进化关系最近;桡足类种内同源性要高于虾蟹类,与虾类同源性高于蟹类。荧光定量数据分析表明,不同浓度铜、镉、锌胁迫下太平洋真宽水蚤HSP70基因表达水平具有显著的时间效应与浓度效应的特征,三种金属对Ep.HSP70抑制效应呈现CuCdZn的趋势。Ep.HSP70基因的成功克隆及金属胁迫下的表达分析为深入研究HSP70蛋白生物学功能具有重要意义。  相似文献   

3.
为深入分析热休克蛋白响应胁迫的分子机制,实验以宽体沙鳅(Botia reevesae)为研究对象,利用同源克隆和cDNA 末端快速扩增(rapid amplification of cDNA ends,RACE) 技术克隆得到宽体沙鳅热休克蛋白70(BR-HSP70) 的cDNA 全长。结果发现,BR-SP70 cDNA全长为2,371bp,包含1,947 bp的开放阅读框(opening reading frame,ORF),102 bp 5’-非编码区(untranslated region,UTR)和322 bp 3’-UTR等。通过序列同源性比对发现,BR-HSP70 cDNA与团头鲂(Megalobrama amblycephala)和猪(Sus scrofa)的同源性分别为98%及83%,且ORF编码的649个氨基酸中含有HSP70家族的家族信号标签、N-糖基化位点及EEVD等能位点等保守序列。上述结果表明,本研究所获的基因为宽体沙鳅 HSP70基因。实时荧光定量PCR 分析发现,氨氮胁迫和嗜水气单胞菌(Aeromonas hydrophila)侵染均会显著上调宽体沙鳅鳃、肝脏及肾脏HSP70 mRNA的表达,表明HSP70基因在宽体沙鳅应对环境胁迫中发挥了重要的抗应激作用。  相似文献   

4.
参考鳗鲡等鱼类线粒体DNA序列进行了中国花鲈线粒体DNA细胞色素b基因片断的引物设计、PCR扩增及其序列测定。得到中国花鲈的碱基序列为410bp,其A、T、G、C含量分别为101bp(24.63%)、112bp(27.32%)、72bp(17.56%)、125bp(30.49%),与鳗鲡等其他鱼类相同基因片断序列碱基含量相似。  相似文献   

5.
根据其他鱼类DMRT1基因中的保守序列设计了一对简并引物 ,利用反转录 多聚酶链式反应 (RT PCR)的方法克隆了黑鲷 (Acanthopagrusschlegeli)DMRT1基因cDNA的一个片段 .该片段长 13 8bp ,推导的氨基酸序列由 45个氨基酸残基组成 .同源性分析表明 ,该cDNA片段与其他鱼类DMRT1基因序列具有较高的同源性  相似文献   

6.
为了从分子水平研究大菱鲆生长激素作用机制及进化机制.以大菱鲆(Scophthalmus maximus)为材料从脑垂体中提取mRNA,利用SMART-RACE技术建立大菱鲆脑垂体cDNA文库,并从该文库中克隆出大菱鲆生长激素(growth Hormone,GH)cDNA全长序列.测序结果表明,克隆的大菱鲆GH cDNA序列全长为876 bp,包括108 bp的5'UTR和174 bp的3'UTR序列.该基因的开放阅读框全长591 bp,编码由197氨基酸残基组成的生长激素成熟肽序列,用生物软件DNASTAR计算大菱鲆生长激素蛋白分子量为1*!909.22,等电点为6.24.将大菱鲆与漠斑牙鲆、褐牙鲆等共7种鲆鲽鱼类GH成熟肽氨基酸序列进行比较分析,结果显示大菱鲆与其他6种鲆鲽鱼类序列同源性均为70%左右,而鲆科鱼类与鲽科鱼类间生长激素基因同源性很高(≥80%),说明大菱鲆与鲆科、鲽科鱼类的同源性较低.另外,运用PAUP软件对7种鲆蝶科鱼类与另外8种不同种属鱼类进行了分子系统进化树分析,结果与根据传统的形态学和生化特征分类进化地位基本一致,大菱鲆单独形成1个分支且与鲆科和鲽科鱼类相距较远,此结果为在形态学分类基础上进一步定义菱鲆属鱼类分类提供了理论依据.  相似文献   

7.
利用RT-PCR和快速扩增cDNA末端(rapid amplification of cDNA ends,RACE)技术首次克隆了宽体沙鳅(Botia reevesae)-肌动蛋白基因的cDNA全序列,该序列全长为1795bp,由长100bp的5非翻译区(untranslated region,UTR)、570bp的3非翻译区和1125bp的开放阅读框(open reading frame,ORF)组成,编码375个氨基酸。宽体沙鳅-actin氨基酸序列包含1个糖基化位点、9个N-豆寇酰化位点、3个actin信号位点等主要结构区域。PSI-BLAST比对表明,宽体沙鳅-actin氨基酸与真鲷、罗非鱼、虹鳟等鱼类同源性达99%。NJ法系统进化分析显示宽体沙鳅-actin首先与鲢聚在一起,然后与、尖头等鱼类聚在一起。荧光定量PCR检测-actin基因在宽体沙鳅脑、鳃、心脏、肝、胃等12个组织的表达无显著差异(P<0.05),具有良好的稳定性。  相似文献   

8.
参考鳗鲡等鱼类线粒体 DNA序列进行了中国花鲈线粒体 DNA细胞色素 b基因片断的引物设计、PCR扩增及其序列测定。得到中国花鲈的碱基序列为 4 10 bp,其 A、T、G、C含量分别为 10 1bp(2 4 .6 3% )、112 bp(2 7.32 % )、72 bp(17.56 % )、12 5bp(30 .4 9% ) ,与鳗鲡等其他鱼类相同基因片断序列碱基含量相似。  相似文献   

9.
热休克蛋白(heat shock proteins:HSPs)为动植物响应外界胁迫产生的一类蛋白质,能有效改善机体对外界胁迫的适应能力。本研究基于先前获得的低盐胁迫金乌贼(Sepia esculenta)高通量转录组数据,对与低盐胁迫密切相关的热休克蛋白(热休克蛋白家族和晶体蛋白(crystallin)家族)基因进行挖掘;鉴于实时定量内参基因筛选,同时挖掘出金乌贼肌动蛋白(actin)家族系列基因;然后,对肌动蛋白、热休克蛋白和晶体蛋白家族基因及其编码的氨基酸序列进行生物信息学分析并探究低盐胁迫对金乌贼热休克蛋白和晶体蛋白家族基因表达的影响。金乌贼肌动蛋白家族基因包括actin、内收肌actin、胞质actin、actin 1、actin II和βactin 6个成员,热休克蛋白家族基因包括HSPβ、小HSP、HSP 10、HSP 16、HSP 30、HSP 60、HSP 70、HSP 75、HSP 90α、HSP 90和HSP 90β11个成员,金乌贼晶体蛋白家族基因包括S crystallin、S crystallin 6、S crystallin SL18和O crystallin 4个成员。氨基酸序列比对发现,肌动蛋白家族6个基因共享甘氨酸、精氨酸、丝氨酸、异亮氨酸、苏氨酸和天冬氨酸等13个位点,晶体蛋白家族4个基因共享苯丙氨酸、天冬酰胺、甘氨酸、天冬氨酸、脯氨酸、精氨酸、酪氨酸、丝氨酸和半胱氨酸等17个位点,而热休克蛋白家族HSPβ、小HSP、HSP 10、HSP 16和HSP 305个基因共享1个甘氨酸位点和4个保守位点,HSP 60、HSP 70、HSP 75、HSP 90α、HSP 90和HSP 90β6个基因仅共享2个保守位点。实时定量结果发现,低盐胁迫可以明显提高金乌贼HSPβ、HSP 16、HSP 30和HSP 70的基因表达,而明显降低晶体蛋白家族基因的表达,表明在低盐胁迫条件下,金乌贼热休克蛋白家族基因通过自身的差异表达来提高机体对外界胁迫的适应防御能力。  相似文献   

10.
对中国华南沿海不同地理群体的黄斑篮子鱼(Siganus oramin)进行遗传多样性分析, 测定了漳州东山湾(DS)、深圳大亚湾(DY)、深圳大鹏湾(DP)、阳江沙扒湾(SB) 4个群体共计100尾黄斑篮子鱼线粒体DNA D-loop序列。结果显示: 序列长度约828bp, 包含72个变异位点, 50个单倍型, A、T、C、G含量平均为31.2%、31.1%、20.8%和16.9%; 单倍型多样性指数为0.893±0.053~0.957±0.030, 核苷酸多样性指数为0.0105±0.0031~0.0179±0.0031, 表现为高单倍型多样性而低核苷酸多样性的特点; 群体内的遗传距离0.0107~0.0184, 群体间的遗传距离0.0112~0.0172, AMOVA分析显示群体间的分子变异占0.66%, 群体内占99.34%; 中性检验结果表明Fu’s Fs检验值为显著的负值(-16.7079, p<0.01); 核苷酸不配对分布图呈单峰, 表明黄斑篮子鱼演化过程中经历过种群扩张事件, 推测扩张时间约在1.38~4.60万年前。综上, 华南沿海岸4个黄斑篮子鱼群体间不存在显著的遗传分化, 可划归一个管理单元, 而沙扒湾(SB)群体遗传多样性水平相对较高, 应优先加以保护。  相似文献   

11.
cDNA's coding for cytochrome P4501A1 (CYP1A1), phenol UDP-glucuronosyltransferase (UDPGT) and glutathione S-transferase (GST-A) were cloned and sequenced from an expression library prepared from the liver of a 3-methylcholanthrene (3-MC) induced plaice. Plaice CYP1A1 and Phenol UDPGT display a high degree of structural conservation with homologous mammalian isoforms and their mRNAs were shown to be highly induced in liver after 3-MC treatment of fish. Expression of plaice GST-A, which displays closer homology to GSTs from plants and invertebrates than those of mammals, is repressed after 3-MC treatment.  相似文献   

12.
克隆获得缢蛏(Sinonovacula constricta)谷胱甘肽S-转移酶(Sc-GSTσ)和热休克蛋白90(Sc-HSP90)基因的cDNA全长,分析了它们的组织表达差异及其在氨氮胁迫下的表达特征。结果表明,Sc-GSTσ的全长cDNA为1 414 bp,含有639 bp的开放阅读框(Open Reading Frame,ORF),编码212个氨基酸,Sc-GSTσ氨基酸序列与其他物种的GST氨基酸序列同源性为31.88%~43.40%;而Sc-HSP90的全长cDNA为2 752 bp,ORF为2 181 bp,编码726个氨基酸,其氨基酸序列与其他物种HSP90的氨基酸序列同源性为76.77%~87.05%。荧光定量PCR分析发现,Sc-GSTσ和Sc-HSP90在缢蛏各组织中均有表达,两者均在肝胰腺中表达量最高。氨氮胁迫后,Sc-GSTσ和Sc-HSP90 mRNA在肝胰腺中表达均显著上调(p<0.05),表明氨氮胁迫引起机体的应激反应,2个基因可能参与机体解毒或防御过程。但胁迫后期表达量下降推测是机体的防御能力有限,不足以完全保护宿主免受应激诱导的细胞损伤。  相似文献   

13.
Paralytic shellfish poisoning (PSP) toxins have been implicated as the causative agent of a number of fish kills. Exposure experiments indicate that fish are susceptible to PSPs by intraperitoneal (i.p.) and oral administration, while sampling of fish affected by toxic blooms reveals that these toxins can be accumulated. In spite of the potential impact to marine fisheries, little research has been conducted on the potential metabolism and detoxification of PSPs in marine fishes. Previous work by this group has shown that the xenobiotic metabolising enzyme (XME) cytochrome P-450 (CYP1A) is induced in Atlantic salmon (Salmo salar) following i.p. exposure to saxitoxin (STX). Salmon injected i.p. with sub-lethal doses of STX show a four- to eight-fold induction of hepatic CYP1A (as shown by ethoxyresorufin-O-deethylase activity) over controls after 96 h. Results presented here show that the phase II XME glutathione S-transferase (GST) is also induced in salmon following PSP exposure. Post smolts were exposed to three injections of PSPs (2 micrograms STXeq/kg) over 21 days. Injection of both STX and PSPs extracted from a toxic strain of dinoflagellate (Alexandrium fundyense, CCMP 1719) resulted in induction of hepatic GST, as measured by activity for 1-chloro 2,4-dinitrobenzene. Such inductions indicate a potential role for XMEs in PSP metabolism. Possible roles for other enzymes are also discussed.  相似文献   

14.
Aim of this study was to determine the extent of pollution in the West Black Sea Coast of Turkey by measuring CYP1A associated EROD activity, phase II enzyme, glutathione S-transferase and antioxidant enzymes, catalase and glutathione reductase activities and immunochemical detection of CYP1A protein level in the liver of mullet. The fish samples were caught from six locations having a varying degree of pollution in the West Black Sea Region of Turkey in August 2005, 2006 and 2007. Mullets caught from Zonguldak Harbour, Ere?li Harbour and Gülüç Stream’s Mouth displayed 6–9-fold higher EROD, 2–4-fold higher glutathione S-transferase and 2–3-fold higher catalase activities than the reference site, Amasra. Total polyaromatic hydrocarbon levels in mullets caught from these locations were also significantly higher (2–4-fold) than Amasra. The results of this study indicate that Zonguldak Harbour, Ere?li Harbour and Gülüç Stream are highly polluted by polycyclic aromatic hydrocarbons and related contaminants.  相似文献   

15.
The initial sampling in the Marine Monitoring Program (MOMAM), coordinated by the Ministry of Marine Affairs (IEAPM), was performed along the southeast coast of Brazil. Orthopristis ruber samples were collected at Guanabara, Sepetiba and Ilha Grande Bays. Microsomal CYP1A levels and cytosolic cholinesterase (ChE), catalase (CAT) and glutathione S-transferase (GST) activities were measured in the liver of these fish according to established procedures. CAT activity and CYP1A content were significantly higher (P < or = 0.05) in fish caught at Guanabara Bay, which might be due to higher levels of peroxisome proliferators and Ah receptor agonists, respectively, at this site compared to the other sites. Also, lower GST activity was observed in fish from this site, which may possibly be related to the presence of oxidative-stress inducing compounds.  相似文献   

16.
We have previously shown that largemouth bass (Micropterus salmoides) has a remarkable ability to conjugate 4-hydroxy-2-nonenal (4HNE), a mutagenic and cytotoxic alpha,beta-unsaturated aldehyde produced during the peroxidation of lipids. In addition, we have isolated a glutathione S-transferase cDNA (bass GSTA) that encodes a recombinant protein which is highly active in 4HNE conjugation and structurally similar to plaice (Pleuronectes platessa) GSTA. In the present study, HPLC-GST subunit analysis revealed the presence of at least two major GST isoforms in bass liver, with one peak constituting 80% of the total bass liver GST protein. Liquid chromatography mass spectrometry (LC-MS) and electrospray ionization analysis of the major bass GST subunit yielded a molecular weight of 26,396 kDa. Endo-proteinase Lys-C digestion and Edman degradation protein sequencing of this GST peak demonstrated that this protein was encoded by bass GSTA. Analysis of genomic DNA fragments isolated by nested PCR indicated the presence of a GST gene cluster in bass liver that contained GSTA, and was similar to a GST gene cluster characterized by Leaver et al., in plaice. Collectively, our data indicates the presence of a major GST in bass liver involved in the protection against oxidative stress. This GST is part of a gene cluster that may be conserved in certain freshwater and marine fish.  相似文献   

17.
The aim of this study was to investigate biochemical changes in juvenile carp (Cyprinus carpio) exposed to zinc chloride (10, 30 and 100 microM) for a period of 48 h. Zinc exposure caused a concentration-dependent reduction in glutathione reductase (GR) activity in gills, liver and brain. Gill glutathione S-transferase (GST) was reduced when animals were exposed to the highest concentration of 100 microM zinc. The phosphorylation of p38(MAPK) increased in the brain of fish exposed to zinc 100 microM, while phosphorylation of the extracellular signal-regulated protein kinase 1/2 (ERK1/2) and c-Jun N-terminal protein kinase 1/2 (JNK1/2) remained unchanged. Expression of proteins HSP60 and HSP70 were not affected by zinc exposure. Considering the significant concentration-dependent inhibition of GR in all tissues analyzed, this enzyme could be a potential biomarker of exposure to zinc, which has to be confirmed.  相似文献   

18.
We are investigating the effects of in vivo exposure of prototypical enzyme inducing agents on hepatic biotransformation enzyme expression in largemouth bass (Micropterus salmoides), a predatory game fish found throughout the United States and Canada. The current study targeted those genes involved in biotransformation and oxidative stress that may be regulated by Ah-receptor-dependent pathways. Exposure of bass to beta-naphthoflavone (beta-NF, 66 mg/kg, i.p.) elicited a 7-9-fold increase in hepatic microsomal cytochrome P4501A-dependent ethoxyresorufin O-deethylase (EROD) activities, but did not affect cytosolic GST catalytic activities toward 1-chloro-2,4-dinitrobenzene (CDNB) or 5-androstene-3,17-dione (ADI). Glutathione S-transferase A (GST-A) mRNA expression exhibited a transient, but non-significant increase following exposure to beta-NF, and generally tracked the minimal changes observed in GST-CDNB activities. Expression of the mRNA encoding glutamate-cysteine ligase catalytic subunit (GCLC), the rate-limiting enzyme in glutathione (GSH) biosynthesis, was increased 1.7-fold by beta-NF. Changes in GCLC mRNA expression were paralleled by increases in intracellular GSH. In summary, largemouth bass hepatic CYP1A-dependent and GSH biosynthetic pathways, and to a lesser extent GST, are responsive to exposure to beta-NF.  相似文献   

19.
In order to investigate the influence of domestic sewage on the gene expression of Pacific oysters Crassostrea gigas, suppression subtractive hybridization (SSH) method was employed. Oysters were sampled at a farming area and, after 10 days of acclimation in the laboratory, were exposed to untreated domestic sewage diluted 33% for 48 h. Gills of male oysters were excised for total RNA extraction. mRNA was purified and the differential gene expression was analyzed by SSH. We obtained 61 cDNA sequences but only 15 were identified, which includes fatty acid binding protein, multidrug resistance protein, omega glutathione S-transferase, cytochrome P450 isoform CYP356A1, among others. The identified genes are associated with different metabolic functions like biotransformation, membrane transport, aerobic metabolism and translational machinery, evidencing the potential toxic effects elicited by these effluents.  相似文献   

20.
The biotransformation of xenobiotics by microsomal cytochromes P450 is known to be pivotal in the effects of some compounds, and thought to be so for many. A knowledge of CYP gene diversity and CYP function and regulation in aquatic species is pursued, expecting that it will disclose mechanisms, allow predictions regarding species differences in susceptibility, and provide markers for exposure to xenobiotics. As well, it is hoped that such knowledge will provide clues to CYP endogenous functions, and to the origin and functional significance of CYP gene diversity. The knowledge of CYP in marine and other aquatic species is expanding rapidly. The diversity of CYP genes in non-mammalian vertebrates may approximate that in mammals. At present, cloning studies have identified members of gene families 1 to 4 have been cloned from one or more fish species. Where known, the gene structures of fish CYP genes are like those of mammalian homologues. Only one CYP1A gene has been identified in most fish species examined. Fish CYP1As, including multiple forms from recent divergence in some genera, have structural and catalytic properties more like CYP1A1, but also have properties that are 1A2-like, consistent with fish CYP1As representing the CYP ancestral to both CYP1A1 and CYP1A2. A number of genes cloned from several species have been classified in the 3A subfamily. Fish CYP3As catalyze steroid 6β-hydroxylase, and have other properties consistent with mammalian 3As. Recently identified CYP4 genes classify to novel subfamilies but apparently are homologues of mammalian CYP4 genes, and may act on similar substrates. The greatest diversity of fish CYP genes is in family 2; there are now six fish CYP2 subfamilies known. Four of these are novel subfamilies, although cladistic analysis suggests distinct relationships to mammalian CYP2 subfamilies. Heterologous expression and characterization of some of these CYP have identified similar functions among genes in different subfamilies. For example, fish CYP2Ns and CYP2Ps are related to mammalian CYP2Js, and CYP2P3 and CYP2J2 have strikingly similar functions as fatty acid epoxygenases and hydroxylases, with nearly identical regio- and enantioselectivity for metabolism of arachidonic acid. In addition to sequence and catalytic similarities, there also are indications that CYP regulation, tissue and cellular localization are similar between fish and mammals. Yet even in cases where orthology is strongly suggested, e.g. CYP1A, there appear to be taxonomic differences in active site structure suggesting potential differences in involvement of CYP1A in toxicity. In contrast to fish, CYP diversity and functions in aquatic invertebrates are poorly known. Investigators have identified novel gene families and subfamilies in crustaceans (CYP2L; CYP45), molluscs (CYP30, CYP10) and sponges (CYP38). CYP4C genes occur in crustaceans, molluscs and echinoderms, and a new subfamily (CYP4Y) in molluscs. The future? There is no doubt that new CYP will continue to be discovered in non-mammalian vertebrates; some (e.g. CYP51) can be predicted confidently. And, there is no doubt that the numbers known in invertebrates will expand greatly. In insects and C. elegans the numbers are very high, and even slime molds have 18 CYP genes. It is virtually certain that CYP genes with unique functions will be discovered. While the knowledge of CYP genes is increasing, knowledge of CYP function and regulation lag well behind. Technical approaches to speed the aquisition of such knowledge are available. The information will be essential to discern the role that CYP play in the disposition and toxicity of xenobiotics, during development as well as in adults. Yet, when such data are in hand, we may have to face the paucity of information on the diversity, function and regulation other enzymes, notably the glutathione S-transferases, glucuronyl transferases and sulfotransferases, in aquatic species. Discerning orthologous relationships among CYP genes, as well as those for phase II enzymes, could highlight gene lineages associated with conserved and endogenous functions. Understanding CYP endogenous functions, as well as their metabolism of xenobiotics, may reveal fully the ways that chemicals cause toxicity. [Support: Sea Grant NA46RG0470-R/P61, EPA R-829890, NIH ES07381].  相似文献   

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