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Phylogenomic analysis of transcriptomic sequences of mitochondria and chloroplasts of essential brown algae (Phaeophyceae) in China 总被引：1，自引：1，他引：0
JIA Shangang WANG Xumin LI Tianyong QIAN Hao SUN Jing WANG Liang YU Jun REN Lufeng YIN Jinlong LIU Tao WU Shuangxiu 《海洋学报(英文版)》2014,33(2):94-101
The chloroplast and mitochondrion of brown algae （Class Phaeophyceae of Phylum Ochrophyta） may have originated from different endosymbiosis. In this study, we carried out phylogenomic analysis to distinguish their evolutionary lineages by using algal RNA-seq datasets of the 1 000 Plants （1KP） Project and publicly available complete genomes of mitochondria and chloroplasts of Kingdom Chromista. We have found that there is a split between Class Phaeophyceae of Phylum Ochrophyta and the others （Phylum Cryptophyta and Haptophyta） in Kingdom Chromista, and identified more diversity in chloroplast genes than mitochondrial ones in their phylogenetic trees. Taxonomy resolution for Class Phaeophyceae showed that it was divided into Laminariales-Ectocarpales clade and Fucales clade, and phylogenetic positions of Kjellmaniella crassi-folia, Hizikia fusifrome and Ishige okamurai were confirmed. Our analysis provided the basic phylogenetic relationships of Chromista algae, and demonstrated their potential ability to study endosymbiotic events. 相似文献
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Epizoic diatoms on marine copepods are common in nature and may have a special ecological relationship with their hosts.However,this special ecological group is not well known,and it has only rarely been studied in the China seas.To address this knowledge gap,the species diversity and classification of epizoic diatoms on planktonic copepods were studied with samples collected from the East China Sea.In the present study,a marine araphid diatom genus Protoraphis and its type species,Pr.hustedtiana,were observed and identified by light and electron microscopy,thus representing the first record of this genus and its type species in China.This genus is characterized by a median sternum strongly bent to opposite sides and terminate in two transapical grooves at the valve ends.Protoraphis hustedtiana was found to be epizoic on the posterior body appendages and segments of the marine calanoid copepod Candacia bradyi.An internal view shows a complex,ear-shaped process that is close to the apical slit field.The ecological habitats and geographical distributions of Protoraphis were also discussed,and,together with complementary morphological studies,our results have increased the number of records for marine epizoic diatoms to three genera with three species in China,including Pseudohimantidium and Pseudofalcula. 相似文献
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The production of dimethylsulfide (DMS) and dimethylsulfoniopropionate (DMSP) by marine microalgae was investigated to elucidate more on the role of marine phytoplankton in ocean-atmosphere interactions in the global biogeochemical sulfur cycle.Axenic laboratory cultures of four marine microalgae–Isochrysis galbana 8701,Pavlova viridis,Platymonas sp.and Chlorella were tested for DMSP production and conversion into DMS.Among these four microalgae,Isochrysis galbana 8701 and Pavlova viridis are two species of Haptophyta,while Chlorella and Platymonas sp.belong to Chlorophyta.The results demonstrate that the four algae can produce various amounts of DMS(P),and their DMS(P) production was species specific.With similar cell size,more DMS was released by Haptophyta than that by Chlorophyta.DMS and dissolved DMSP (DMSPd) concentrations in algal cultures varied significantly during their life cycles.The highest release of DMS appeared in the senescent period for all the four algae.Variations in DMSP concentrations were in strong compliance with variations in algal cell densities during the growing period.A highly significant correlation was observed between the DMS and DMSPd concentrations in algal cultures,and there was a time lag for the variation trend of the DMS concentrations as compared with that of the DMSPd.The consistency of variation patterns of DMS and DMSPd implies that the DMSPd produced by phytoplankton cells has a marked effect on the production of DMS.In the present study,the authors’ results specify the significant contribution of the marine phytoplankton to DMS(P) production and the importance of biological control of DMS concentrations in oceanic water. 相似文献
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CHEN Guofu WANG Quanfu ZHANG Chunyun ZHANG Baoyu WANG Guangce LU Douding XU Zhong YAN Peishen 《海洋学报(英文版)》2013,32(2):66-75
Harmful algal blooms recently have been under the spotlight throughout the world, because of their negative impact on the marine environment, aquaculture, fisheries as well as public health. The development of methods for rapid and precise identification and quantification of causative species is essential for the warning and monitoring of blooms, among which the techniques based on taxonomic probes are the most favored. In this study, two harmful algae, i.e., Prorocentrum minimum and Karenia mikimotoi were taken into consideration. The partial large subunit rDNA (D1-D2) of both species were firstly PCR-amplified, cloned and sequenced. The obtained sequences were then introduced to carry out alignment analysis for gene specific regions. Three respective candidate probes for each species were designed and used to screen the optimal probe by performing fluorescence in situ hybridization (FISH) tests. The results showed that the probes Pmin0443 and Kmik0602 displayed the best hybridization for P. minimum and K. mikimotoi, respectively. Both the specific (taxonomic) (Pmin0443 and Kmik0602) and the control probes (UniC0512 and UniR0499) were used for cross-reactivity tests with other microalgae in our laboratory. The probes Pmin0443 and Kmik0602 are specific and could be served as taxonomic probes introduced into the techniques targeting rRNA, such as FISH, sandwich hybridization, and DNA-microarray assay of P. minimum and K. mikimotoi in the future. Finally, FISH analyses with both probes were performed on the simulated field samples. The probes could hybridize exclusively with the target cells well, and no significant difference (p >0.05) was observed in the cell densities of the samples determined by FISH and light microscopy (LM). All suggest that the probes are specific and could be introduced into FISH for the monitoring of both harmful algae. 相似文献
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Phylogenomic analysis of transcriptomic sequences of mitochondria and chloroplasts for marine red algae (Rhodophyta) in China 总被引：1，自引：1，他引：0
JIA Shangang WANG Xumin QIAN Hao LI Tianyong SUN Jing WANG Liang YU Jun LI Xingang YIN Jinlong LIU Tao WU Shuangxiu 《海洋学报(英文版)》2014,33(2):86-93
The chloroplast and mitochondrion of red algae （Phylum Rhodophyta） may have originated from different endosymbiosis. In this study, we carried out phylogenomic analysis to distinguish their evolutionary lin-eages by using red algal RNA-seq datasets of the 1 000 Plants （1KP） Project and publicly available complete genomes of mitochondria and chloroplasts of Rhodophyta. We have found that red algae were divided into three clades of orders, Florideophyceae, Bangiophyceae and Cyanidiophyceae. Taxonomy resolution for Class Florideophyceae showed that Order Gigartinales was close to Order Halymeniales, while Order Graci-lariales was in a clade of Order Ceramials. We confirmed Prionitis divaricata （Family Halymeniaceae） was closely related to the clade of Order Gracilariales, rather than to genus Grateloupia of Order Halymeniales as reported before. Furthermore, we found both mitochondrial and chloroplastic genes in Rhodophyta under negative selection （Ka/Ks〈1）, suggesting that red algae, as one primitive group of eukaryotic algae, might share joint evolutionary history with these two organelles for a long time, although we identified some dif-ferences in their phylogenetic trees. Our analysis provided the basic phylogenetic relationships of red algae, and demonstrated their potential ability to study endosymbiotic events. 相似文献
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Dark respiration (non-photorespiratory mitochondrial respiration),which occurs both in the light and in darkness,is vital for growth and survival of algae and plays a critical role in modulating the carbon balance of them.In the present study,we have investigated dark respiration in the light (R L) and in darkness (R D) in three marine macroalgal species,Hizikia fusiformis (phaeophyta),Gracilaria lemaneiformis (Rhodophyta) and Ulva lactuca (Chlorophyta),cultured at 20℃ using aeration with two CO 2 conditions:current ambient (CO 2 concentration about 380 μl/L) and elevated CO 2 (approximately 720 μl/L) air.R L was estimated by using the Kok method,whereas R D was determined as the rate of O 2 influx at zero light.The results showed that both R L and R D were unchanged for the elevated CO 2-grown algae relative to ambient CO 2 concentration for all the algal species tested.However,R L was significantly lower than R D across all the algal species and growth CO 2 treatments,demonstrating that daytime respiration was partly depressed by the light.The percentage of inhibition of respiration by light was similar between ambient and elevated CO 2 grown algae.The ratio of respiration to photosynthesis,which tended to decrease when estimated using R L instead of R D,was not altered for the elevated relative to ambient CO 2 concentration.The results suggest that R L,rather than R D,is a more accurate estimate of nonphotorespiratory carbon loss in marine macroalgae during the daytime.It would not be anticipated that elevated atmospheric CO 2 would exert a substantial influence on respiratory flux either in the light or in darkness in these particular marine macroalgal species. 相似文献
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对海带(Saccharina japonica)转录组测序数据进行分析,从70 497条Unigenes中共检测到9 237个简单序列重复(SSR)位点,并对包含SSR序列的Unigenes进行功能注释。海带转录组中SSR的类型十分丰富,其中单核苷酸和三核苷酸重复SSR的数量最多,分别占SSR总数的40.9%和39.4%,其次为四核苷酸、二核苷酸、五核苷酸和六核苷酸重复,分别占SSR总数的9.8%,6.1%,3.1%和0.7%。SSR重复单元类型共有147种,其重复次数的范围为5~70次。功能注释发现约50%含有SSR的Unigenes获得了注释信息,并且大多数与已知蛋白有同源性。COG、GO功能分类结果均表明,大量含有SSR序列的基因与多种生物功能有关,其中与碳水化合物代谢及参与细胞组成相关的基因数量最多。本研究结果为深入开发功能性SSR标记奠定基础,也为开展海带分子标记辅助选育提供支持。 相似文献
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Technetium (Tc) biokinetics were investigated in marine macroalgae using 92mTc as tracer. Green and red algae accumulated Tc (VII) to a very low degree (CF ? 1–20); however, a much higher affinity for pertechnetate was found in some brown algal species (CF > 103). Comparative tests with different species of brown algae revealed that technetium does not accumulate similarly in all species of this group. Moreover, no significant differences in radionuclide uptake were noted between brown algae exposed to Tc in either the IV or VII oxidation states. Bioaccumulation of technetium appears to be a metabolically controlled process since uptake did not occur in heat-killed individuals and both light and temperature significantly enhanced the accumulation of technetium in brown algae. Dissection of Sargassum vulgare following the uptake phase showed that the rapidly growing air bladder, leaf-like laterals and small branches contained higher Tc concentrations and retained a greater fraction of the radioactivity than the older, cylindrical main axis. Pertechnetate retention in two brown algae was found to be significantly different; their biological half-lives for Tc differed by an order of magnitude (). During depuration, loss took place more rapidly from the younger portions of the seaweed, as evidenced by the highest concentration and greatest fraction of Tc retained in the older, cylindrical main axis. Provided certain precautions are taken, brown algae such as Cystoseira compressa and S. vulgare would serve as good bioindicator organisms for the presence of Tc contamination in marine waters. 相似文献
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南极红藻具有重要的生态学功能和开发利用价值。南极极端环境赋予了其独特的生理耐受机制，也是发现新基因和代谢途径的理想材料。我们测序分析了南极产胶红藻Iridaea cordata (Turner) Bory和Curdiea racovitzae Hariot的转录组序列，并与其常温近缘种进行了比较，同时挖掘了其与光限制和强紫外线辐射等光环境适应相关的基因。I. cordata和C. racovitzae的转录组序列分别拼接成了14055条和12006条非冗余基因，平均长度分别为1473 bp和1448 bp。在I. cordata转录组中发现多条与绿藻基因同源的捕光复合物LHC基因Lhca2、Lhca6和Lhcb，并且在两种南极红藻中都各发现了1条编码结合岩藻黄质和Chl a/c蛋白的Lhcf基因，目前尚未在其他红藻中发现这类基因。光裂解酶修复紫外线诱导DNA损伤，在I. cordata的转录组序列中发现了6?4光裂解酶，光裂解酶CPD I和CPD II基因，而C. racovitzae转录组序列中仅找到了光裂解酶CPD II基因。尽管南极红藻中这些特有基因的功能有待进一步的验证，但是本文为后续研究红藻的南极极端光环境适应机制提供了方向。 相似文献