Cycling the representer algorithm for variational data assimilation with a nonlinear reduced gravity ocean model     

Hans E. Ngodock  Scott R. Smith  Gregg A. Jacobs 《Ocean Modelling》2007,19(3-4):101-111

The representer method was used by [Ngodock, H.E., Jacobs, G.A., Chen, M., 2006. The representer method, the ensemble Kalman filter and the ensemble Kalman smoother: a comparison study using a nonlinear reduced gravity ocean model. Ocean Modelling 12, 378–400] in a comparison study with the ensemble Kalman filter and smoother involving a 1.5 nonlinear reduced gravity idealized ocean model simulating the Loop Current (LC) and the Loop Current eddies (LCE) in the Gulf of Mexico. It was reported that the representer method was more accurate than its ensemble counterparts, yet it had difficulties fitting the data in the last month of the 4-month assimilation window when the data density was significantly decreased. The authors attributed this failure to increased advective nonlinearities in the presence of an eddy shedding causing the tangent linear model (TLM) to become inaccurate. In a separate study [Ngodock, H.E., Smith, S.R., Jacobs, G.A., 2007. Cycling the representer algorithm for variational data assimilation with the Lorenz attractor. Monthly Weather Review 135 (2), 373–386] applied the cycling representer algorithm to the Lorenz attractor and demonstrated that the cycling solution was able to accurately fit the data within each cycle and beyond the range of accuracy of the TLM, once adjustments were made in the early cycles, thus overcoming the difficulties of the non-cycling solution. The cycling algorithm is used here in assimilation experiments with the nonlinear reduced gravity model. It is shown that the cycling solution overcomes the difficulties encountered by the non-cycling solution due to a limited time range of accuracy of the TLM. Thus, for variational assimilation applications where the TLM accuracy is limited in time, the cycling representer becomes a very powerful and attractive alternative, given that its computational cost is significantly lower than that of the non-cycling algorithm.  相似文献   

Tidally incised valleys on tropical carbonate shelves: An example from the northern Great Barrier Reef, Australia     

Peter T. Harris  Andrew Heap  Vicki Passlow  Michael Hughes  James Daniell  Mark Hemer  Ole Anderson 《Marine Geology》2005,220(1-4):181-204

The formation of incised valleys on continental shelves is generally attributed to fluvial erosion under low sea level conditions. However, there are exceptions. A multibeam sonar survey at the northern end of Australia's Great Barrier Reef, adjacent to the southern edge of the Gulf of Papua, mapped a shelf valley system up to 220 m deep that extends for more than 90 km across the continental shelf. This is the deepest shelf valley yet found in the Great Barrier Reef and is well below the maximum depth of fluvial incision that could have occurred under a − 120 m, eustatic sea level low-stand, as what occurred on this margin during the last ice age. These valleys appear to have formed by a combination of reef growth and tidal current scour, probably in relation to a sea level at around 30–50 m below its present position.

Tidally incised depressions in the valley floor exhibit closed bathymetric contours at both ends. Valley floor sediments are mainly calcareous muddy, gravelly sand on the middle shelf, giving way to well-sorted, gravely sand containing a large relict fraction on the outer shelf. The valley extends between broad platform reefs and framework coral growth, which accumulated through the late Quaternary, coincides with tidal current scour to produce steep-sided (locally vertical) valley walls. The deepest segments of the valley were probably the sites of lakes during the last ice age, when Torres Strait formed an emergent land-bridge between Australia and Papua New Guinea. Numerical modeling predicts that the strongest tidal currents occur over the deepest, outer-shelf segment of the valley when sea level is about 40–50 m below its present position. These results are consistent with a Pleistocene age and relict origin of the valley.

Based on these observations, we propose a new conceptual model for the formation of tidally incised shelf valleys. Tidal erosion on meso- to macro-tidal, rimmed carbonate shelves is enhanced during sea level rise and fall when a tidal, hydraulic pressure gradient is established between the shelf-lagoon and the adjacent ocean basin. Tidal flows attain a maximum, and channel incision is greatest, when a large hydraulic pressure gradient coincides with small channel cross sections. Our tidal-incision model may explain the observation of other workers, that sediment is exported from the Great Barrier Reef shelf to the adjacent ocean basins during intermediate (rather than last glacial maximum) low-stand, sea level positions. The model may apply to other rimmed shelves, both modern and ancient.  相似文献   

Assessment of cytochrome P450 1A in harbour seals (Phoca vitulina) using a minimally-invasive biopsy approach     

Miller KA  Assunção MG  Dangerfield NJ  Bandiera SM  Ross PS 《Marine environmental research》2005,60(2):153-169

Biomarkers of organochlorine exposure, such as the induction of cytochrome P450 1A (CYP1A), can be used to assess the impact of environmental contaminants on the health of free-ranging marine mammal populations. The objective of the present study was to measure CYP1A in skin and liver biopsies obtained from live harbour seals (Phoca vitulina). Twelve harbour seal pups, aged three to five weeks, were captured from the Fraser River estuary, British Columbia, Canada, and temporarily held in captivity. Skin ( approximately 60 mg) and liver ( approximately 40 mg) biopsies, obtained while seals were under general anaesthesia, yielded sufficient tissue for the measurement of CYP1A by immunoblot analysis and ethoxyresorufin O-deethylase activity. A short-term exposure experiment, in which harbour seals (n=3) were treated orally with beta-naphthoflavone (BNF), resulted in increased hepatic and cutaneous CYP1A protein levels, consistent with observations in other mammals. This study is the first to measure CYP1A in skin and liver biopsies from live harbour seals and to report in vivo BNF-associated CYP1A induction in a marine mammal. The results demonstrate that microsamples collected using minimally-invasive techniques can provide toxicologically-relevant information form marine mammals.  相似文献   

Design of a 3D Chirp Sub-bottom Imaging System     

Jonathan M. Bull  Martin Gutowski  Justin K. Dix  Timothy J. Henstock  Peter Hogarth  Timothy G. Leighton  Paul R. White 《Marine Geophysical Researches》2005,26(2-4):157-169

Chirp sub-bottom profilers are marine acoustic devices that use a known and repeatable source signature (1–24 kHz) to produce decimetre vertical resolution cross-sections of the sub-seabed. Here the design and development of the first true 3D Chirp system is described. When developing the design, critical factors that had to be considered included spatial aliasing, and precise positioning of sources and receivers. Full 3D numerical modelling of the combined source and receiver directivity was completed to determine optimal source and receiver geometries. The design incorporates four source transducers (1.5–13 kHz) that can be arranged into different configurations, including Maltese Cross, a square and two separated pairs. The receive array comprises 240 hydrophones in 60 groups whose group-centres are separated by 25 cm in both horizontal directions, with each hydrophone group containing four individual elements and a pre-amplifier. After careful consideration, it was concluded that the only way to determine with sufficient accuracy the source–receiver geometry, was to fix the sources and receivers within a rigid array. Positional information for the array is given by a Real Time Kinematic GPS and attitude system incorporating four antennas to give position, heading, pitch and roll. It is shown that this system offers vertical positioning accuracy with a root-mean-square (rms) error less than 2.6 cm, while the horizontal positioning rms error was less than 2.0 cm. The system is configured so that the Chirp source signature can be chosen by software aboard the acquisition vessel. The complete system is described and initial navigational and seismic data results are presented. These data demonstrate that the approach of using fixed source-receiver geometry combined with RTK navigation can provide complete 3D imaging of the sub-surface.  相似文献   

Gravity at sea     

Peter DehlingerE.F. Chiburis 《Marine Geology》1972

This is a review article on the types of gravity-measuring instruments used or tested at sea since 1903, on the various extraneous accelerations that affect sea measurements, and on results obtained in several gravity surveys using one type of meter. Free-air gravity anomaly maps are included of: (1) the Gulf of Mexico; (2) a strip west of the coast from northern California to the southern tip of Alaska; and (3) north of Hawaii. Hypothetical crustal and subcrustal sections, consistent with gravity anomalies and seismic refraction data, are included for selected regions.  相似文献   

A detailed magnetic study of the Reykjanes Ridge between 63°00′N and 63°40′N     

Jean-Christophe Sempéré  Leo Kristjansson  Hans Schouten  James R. Heirtzler  G. Leonard Johnson 《Marine Geophysical Researches》1990,12(3):215-234

Immediately southwest of Iceland, the Reykjanes Ridge consists of a series ofen échelon, elongate ridges superposed on an elevated, smooth plateau. We have interpreted a detailed magnetic study of the portion of the Reykjanes Ridge between 63°00N and 63°40N on the Icelandic insular shelf. Because the seafloor is very shallow in our survey area (100–500 m), the surface magnetic survey is equivalent to a high-sensitivity, nearbottom experiment using a deep-towed magnetometer. We have performed two-dimensional inversions of the magnetic data along profiles perpendicular to the volcanic ridges. The inversions, which yield the magnetization distribution responsible for the observed magnetic field, allow us to locate the zones of most recent volcanism and to measure spreading rates accurately. We estimate the average half spreading rate over the last 0.72 m.y. to have been 10 mm/yr within the survey area. The two-dimensional inversions allow us also to measure polarity transition widths, which provide an indirect measure of the width of the zone of crustal accretion. We find a mean transition width on the order of 4.5±1.6 km. The observed range of transition widths (2 to 8.4 km) and their mean value are characteristic of slow-spreading centers, where the locus of crustal accretion may be prone to lateral shifts depending on the availability of magmatic sources. These results suggest that, despite the unique volcanotectonic setting of the Reykjanes Ridge, the scale at which crustal accretion occurs along it may be similar to that at which it occurs along other slow-spreading centers. The polarity transition width measurements suggest a zone of crustal accretion 4–9 km wide. This value is consistent with the observed width of volcanic systems of the Reykjanes Peninsula. The magnetization amplitudes inferred from our inversions are in general agreement with NRM intensity values of dredge samples measured by De Boer (1975) and ourselves. Our thermomagnetic measurements do not support the hypothesis that the low amplitude of magnetic anomalies near Iceland is the result of a high oxidation state of the basalts. We suggest that the observed reduction in magnetic anomaly amplitude toward Iceland may be the result of an increase in the size of pillows and other igneous units.  相似文献   

The Southern Antarctic Circumpolar Current Front: physical and biological coupling at South Georgia     

Peter Ward  Mick Whitehouse  Mike Meredith  Eugene Murphy  Rachael Shreeve  Rebecca Korb  Jon Watkins  Sally Thorpe  Rachel Woodd-Walker  Andrew Brierley  Nathan Cunningham  Sharon Grant  Doug Bone 《Deep Sea Research Part I: Oceanographic Research Papers》2002,49(12):139

The coupling of physics and biology was examined along a 160 km long transect running out from the north coast of South Georgia Island and crossing the Southern Antarctic Circumpolar Current Front (SACCF) during late December 2000. Surface and near surface potential TS properties indicated the presence of three water types: a near-shore group of stations characterised by water which became progressively warmer and fresher closer to South Georgia, an offshore grouping in which sea surface temperatures and those at the winter water level were relatively warm (1.8°C and 0.5°C, respectively), and a third in which surface and winter water temperatures were cooler and reflected the presence of the SACCF. The transect bisected the SACCF twice, revealing that it was flowing in opposite directions, north-westward closest to South Georgia and south-eastwards at its furthest point from the island. The innermost limb was a narrow intense feature located just off the shelf break in 2000–3500 m of water and in which rapid surface baroclinic velocities (up to 35 cm s⁻¹) were encountered. Offshore in the outermost limb, shown subsequently to be a mesoscale eddy that had meandered south from the retroflected limb of the SACCF, flow was broader and slower with peak velocities around 20 cm s⁻¹. Chlorophyll a biomass was generally low (<1 mg m⁻³) over much of the transect but increased dramatically in the region of the innermost limb of the SACCF, where a deepening of the surface mixed layer was coincident with a subsurface chlorophyll maximum (7.4 mg m⁻³) and elevated concentrations down to 100 m. The bloom was coincident with depleted nutrient concentrations, particularly silicate, nitrate and phosphate, and although ammonium concentrations were locally depleted the bloom lay within an elevated band (up to 1.5 mmol m⁻³) associated with the frontal jet. Increased zooplankton abundance, higher copepod body carbon mass and egg production rates all showed a strong spatial integrity with the front. The population structure of the copepods Calanoides acutus and Rhincalanus gigas at stations within the front suggested that rather than simply resulting from entrainment and concentration within the jet, increased copepod abundance was the result of development in situ. Estimates of bloom duration, based on silicate and carbon budget calculations, set the likely duration between 82 and 122 d, a figure supported by the development schedule of the two copepod species. Given this timescale, model outputs from FRAM and OCCAM indicated that particles that occurred on the north side of South Georgia in December would have been in the central-southern Scotia Sea 2–3 months earlier, probably in sea ice affected regions.  相似文献   

Time changes in fishing power in the Danish cod fisheries of the Baltic Sea     

Marchal  Paul; Nielsen  J. Rasmus; Hovgard  Holger; Lassen  Hans 《ICES Journal of Marine Science》2001,58(1):298-310

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Seasonality in nutrient concentrations in Galveston Bay     

Peter H. Santschi 《Marine environmental research》1995,40(4)

In order to investigate factors controlling nutrient cycling in the shallow and turbid coastal ecosystem of Galveston Bay, data from: (1) the Texas Water Commission (TWC) database 1980–1989, and (2) salinity transects in 1989 and 1993 are presented and analyzed. Statistical regression and time-series analysis were carried out on data acquired by TWC between 1980 and 1989, in an attempt to establish seasonally of nutrient and chlorophyll-a (chl.-a.) concentrations in the bay and to determine factors which regulate these concentrations.A strong seasonality was found for phosphorus and chl.-a. in the upper and mid-bay stations. A recurring maximum for phosphate occurred in September and a chl.-a. maximum occurred regularly in March–April. It is hypothesized that benthic regeneration of phosphorus at the end of summer is responsible for the phosphate maximum. The inverse correlation of the partition coefficient (K_d) for phosphate with the concentration of suspended particulate matter (SPM), coupled to a strong enrichment of phosphate in suspended particles at low SPM concentrations, indicates additional control by geochemical and physical processes such as particle sorting and/or particle-colloid interactions. Nitrate is inversely correlated with salinity at the upper and mid-bay stations, indicating the Trinity River is a major source.Nutrient concentrations in the lower bay (East and West Bay stations) are considerably lower and less predictable, as they are not correlated with salinity or temperature. Data from the 1989 and 1993 transects confirm the yearly maximum in phosphate concentration in late summer months, with peak concentrations in the upper Trinity Bay. It is concluded that despite possible phosphate buffering by physical and geochemical mechanisms, relatively large concentration maxima recur regularly every year during the summer, possibly caused by a benthic source of phosphate.  相似文献   

Reproductive life history stages sensitive to oil and naphthalene in Atlantic croaker     

Peter Thomas  Lestarini Budiantara 《Marine environmental research》1995,39(1-4)

The reproductive effects of chronic exposure to water-soluble fractions (WSF) of diesel fuel oil and naphthalene in female Atlantic croaker during critical periods of their reproductive life history were investigated. Fish were repeatedly exposed to WSF of oil (2.5 or 5%) or naphthalene (0.5 or 1.0 ppm) for 5 or 8 weeks. Both pollutants blocked sexual maturation in some fish and impaired ovarian recrudescence in others. The majority of the oocytes in exposed fish were undeveloped and widespread oocyte atresia was evident at higher concentrations of these polycyclic aromatic hydrocarbons (PAH). The disruption of ovarian growth and oocyte development in croaker after PAH exposure was associated with alterations in reproductive endocrine function at multiple sites on the hypothalamus-pituitarygonadal axis. A third period of increased sensitivity to xenobiotics was observed during final oocyte maturation.  相似文献