Modern analogues and the early history of microbial life     

Brendan P. Burns  Roberto Anitori  Philip Butterworth  Ruth Henneberger  Falicia Goh  Michelle A. Allen  Raquel Ibaez-Peral  Peter L. Bergquist  Malcolm R. Walter  Brett A. Neilan 《Precambrian Research》2009,173(1-4):10

Revealing the geological history of microbial life is very challenging. Microbes rarely are preserved with morphological fidelity, and even when they are, morphology is a poor guide to phylogeny and metabolism. Biological studies of environments considered analogous to those of paleobiological interest on the ancient Earth can inform interpretations and suggest new approaches. This paper reviews recent advances in our understanding of the biological diversity of two environments relevant to Archean paleobiology: those of extreme acidity and temperature (the Mt. Hood and White Island volcanoes), and high salinity (living stromatolites in Shark Bay). The combination of traditional microbial isolation with the use of modern molecular techniques has revealed that the microbial communities in these environments are much more diverse than originally thought. Through the extraction of whole microbial community DNA, enzymatic amplification of evolutionarily conserved genes, and cloning and sequencing of these genes, more specific and informed inferences concerning functional complexity in these extreme environments have now been made. Studies of the modern stromatolites have demonstrated that they have a very diverse range of micoorganisms, and contrary to previous interpretations, cyanobacteria are not the most abundant microbes present. In addition, many of the microorganisms are unique with no known close relatives, and these microorganisms may also possess novel physiologies vital to the integrity and persistence of stromatolites through space and time. Microbes in the volcanoes studied are present ubiquitously and include geochemically significant sulfur- and iron-cycling taxa. The findings from the studies reviewed here suggest that the Archean biota may have been functionally diverse and much more complex than has yet been revealed. The importance of studying modern analogues is stressed in that the biogeochemical processes occurring in these communities leave morphological, mineralogical, lipid and isotopic signals that could be sought in the rock record.  相似文献   

Large grains matter: contrasting bed stability and morphodynamics during two nearly identical experiments          下载免费PDF全文

Lucy G. MacKenzie  Brett C. Eaton 《地球表面变化过程与地形》2017,42(8):1287-1295

While the stabilizing function of large grains in step‐pool streams has long been recognized, the role they play in gravel‐bed streams is less clear. Most researchers have ignored the role of large grains in gravel‐bed streams, and have assumed that the median bed surface size controls the erodibility of alluvial boundaries. The experiments presented herein challenge this convention. Two experiments were conducted that demonstrate the significant morphodynamic implications of a slight change to the coarse tail of the bed material. The two distributions had the same range of particle sizes, and nearly identical bulk d₅₀ values (1.6 mm); however the d₉₀ of experiment GSD1 was slightly finer (3.7 mm) than that for experiment GSD2 (3.9 mm). Transport rates during GSD1 were nearly four times greater than during GSD2 (even though the dimensionless shear stress was slightly lower), and the channel developed a sinuous pattern with well‐developed riffles, pools and bars. During GSD2 the initial rectangular channel remained virtually unchanged for the duration of the experiment. The relative stability of GSD2 seems to be associated with a slightly larger proportion of stable (large) grains on the bed surface: at the beginning of GSD1, 3.5% of the bed was immobile, while almost twice as much of it (6.1%) was immobile at the beginning of GSD2. The results demonstrate that the largest grains (not the median size) exert first‐order control on channel stability. Copyright © 2017 John Wiley & Sons, Ltd.  相似文献   

A decadal-scale numerical model for wandering,cobble-bedded rivers subject to disturbance     

Kathryn De Rego  J. Wesley Lauer  Brett Eaton  Marwan Hassan 《地球表面变化过程与地形》2020,45(4):912-927

Alluvial rivers are composed of self-formed channels which are sensitive to disturbances in their flow and sediment-supply regimes. Regime changes commonly occur over decadal and longer timescales and can be caused by anthropogenic alterations such as dam construction and removal. Advances in numerical modeling have increased our ability to explore geomorphic adjustments over long timescales; however, many models designed to be run for decades or longer assume that banks are immovable or that channel width is constant. Since river channels often respond to disturbance by adjusting their geometry, this is a significant shortcoming. To investigate the impact of long-term sediment supply alterations on channel geometry and stability, we have adapted MAST-1D, a reach-scale bed evolution model, to incorporate functions for bank erosion, vegetation encroachment, and local avulsions. The model is designed for medium-large, coarse multithreaded rivers and can be run over long (decades–centuries) timescales. Bank erosion is a function of the mobility and transport capacity for structurally-important grains which protect the bank toe. Vegetation growth is proportional to point bar width and occurs during conditions of low shear stress. Local avulsions occur when aggradation causes channel depth to drop below a threshold. We apply the model to the Elwha River in Washington, USA with the goal of investigating if and when the river recovers from dam emplacement and removal. The Elwha was dammed for nearly 100 years, and then two dams were removed, releasing a large pulse of sediment. We have modeled the set of reaches between the two dams. Our simulations suggest that channel response to dam emplacement occurs gradually over several decades but that the channel recovers to near pre-dam conditions within about a decade following the removal. The dams leave a lasting legacy on the floodplain, which does not completely recover, even after two centuries. © 2019 John Wiley & Sons, Ltd.  相似文献   

Acid mine drainage biogeochemistry at Iron Mountain,California   总被引：2，自引：0，他引：2  

Druschel  Gregory K  Baker  Brett J  Gihring  Thomas M  Banfield  Jillian F 《Geochemical transactions》2004,5(2):13-20

The Richmond Mine at Iron Mountain, Shasta County, California, USA provides an excellent opportunity to study the chemical and biological controls on acid mine drainage (AMD) generation in situ, and to identify key factors controlling solution chemistry. Here we integrate four years of field-based geochemical data with 16S rRNA gene clone libraries and rRNA probe-based studies of microbial population structure, cultivation-based metabolic experiments, arsenopyrite surface colonization experiments, and results of intermediate sulfur species kinetics experiments to describe the Richmond Mine AMD system. Extremely acidic effluent (pH between 0.5 and 0.9) resulting from oxidation of approximately 1 × 10⁵ to 2 × 10⁵ moles pyrite/day contains up to 24 g/1 Fe, several g/1 Zn and hundreds of mg/l Cu. Geochemical conditions change markedly over time, and are reflected in changes in microbial populations. Molecular analyses of 232 small subunit ribosomal RNA (16S rRNA) gene sequences from six sites during a sampling time when lower temperature (<32°C), higher pH (>0.8) conditions predominated show the dominance of Fe-oxidizing prokaryotes such as Ferroplasma and Leptospirillum in the primary drainage communities. Leptospirillum group III accounts for the majority of Leptospirillum sequences, which we attribute to anomalous physical and geochemical regimes at that time. A couple of sites peripheral to the main drainage, "Red Pool" and a pyrite "Slump," were even higher in pH (>1) and the community compositions reflected this change in geochemical conditions. Several novel lineages were identified within the archaeal Thermoplasmatales order associated with the pyrite slump, and the Red Pool (pH 1.4) contained the only population of Acidithiobacillus. Relatively small populations of Sulfobacillus spp. and Acidithiobacillus caldus may metabolize elemental sulfur as an intermediate species in the oxidation of pyritic sulfide to sulfate. Experiments show that elemental sulfur which forms on pyrite surfaces is resistant to most oxidants; its solublization by unattached cells may indicate involvement of a microbially derived electron shuttle. The detachment of thiosulfate (S₂O₃^2-) as a leaving group in pyrite oxidation should result in the formation and persistence of tetrathionate in low pH ferric iron-rich AMD solutions. However, tetrathionate is not observed. Although a S₂O₃^2--like species may form as a surface-bound intermediate, data suggest that Fe³⁺ oxidizes the majority of sulfur to sulfate on the surface of pyrite. This may explain why microorganisms that can utilize intermediate sulfur species are scarce compared to Fe-oxidizing taxa at the Richmond Mine site.

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The viviparous blenny (Zoarces viviparus) as a bioindicator of contaminant exposure: application of biomarkers of apoptosis and DNA damage     

Lyons BP  Bignell J  Stentiford GD  Feist SW 《Marine environmental research》2004,58(2-5):757-761

The viviparous blenny (Zoarces viviparus), also known as eelpout, is considered a suitable biomonitor for use in European estuarine and coastal waters. We have previously shown that Z. viviparus from the industrialised Tyne estuary (UK) display certain histopathologies (e.g., ovotestis and hepatic nuclear and cellular pleomorphism), which are associated with contaminant exposure [Mar. Environ. Res. 55 (2003) 137]. Furthermore, the prevalence of these pathologies was higher than in fish collected from a less contaminated reference site (the Alde estuary, UK). Here, tissue samples were collected from Z. viviparus from the Tyne and Alde estuaries (in the spring and autumn) and analysed for DNA adducts using the (32)P-postlabelling assay and for histopathology. Z. viviparus caught from the Tyne during the spring (56.4+/-18.5 adducts per 10(8) nucleotides) and autumn (63.1+/-7.5 adducts per 10(8) nucleotides) exhibited patterns of DNA adducts which indicated exposure to a complex mixture of genotoxins. In contrast, levels of DNA adducts in Z. viviparus from Alde estuary were significantly lower during both sampling periods. Histopathological changes to the gonads included intersex (ovotestis) and germ cell apoptosis (detected via the TUNEL assay) in male fish captured from the Tyne estuary. Further studies on the use of germ cell apoptotic rate at different estuarine sites are required if it is to be used as a reproductive biomarker of contaminant exposure in male fish.  相似文献   

Non-linear responses of glaciated prairie wetlands to climate warming     

W. Carter Johnson  Brett Werner  Glenn R. Guntenspergen 《Climatic change》2016,134(1-2):209-223

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Photometric correction of Mercury's global color mosaic     

Deborah L. Domingue  Scott L. Murchie  Brett W. Denevi  Nancy L. Chabot  David T. Blewett  Nori R. Laslo  Robin M. Vaughan  Hong K. Kang  Michael K. Shepard 《Planetary and Space Science》2011,59(15):1873-1887

During the third flyby of Mercury by the MESSENGER spacecraft, a dedicated disk-integrated photometric sequence was acquired with the wide-angle multispectral camera to observe Mercury's global photometric behavior in 11 spectral filters over as broad a range of phase angle as possible within the geometric constraints of the flyby. Extraction of disk-integrated measurements from images acquired during this sequence required careful accounting for scattered light and residual background effects. The photometric model fit to these measurements is shown to fit observed radiances at phase angles below 110°, possibly except where both solar incidence and emission angles are high (>70°). The complexity of the scattered light at wavelengths greater than 828 nm contributes to a less accurate photometric correction at these wavelengths. The model is used to correct the global imaging data set acquired at a variety of geometries to a common geometry of incidence angle=30°, emission angle=0°, and phase angle=30°, yielding a relatively seamless mosaic. The results here will be used to correct image mosaics of Mercury acquired in orbit.  相似文献   

The global distribution of pyroclastic deposits on Mercury: The view from MESSENGER flybys 1–3     

Laura Kerber  James W. Head  David T. Blewett  Sean C. Solomon  Lionel Wilson  Scott L. Murchie  Mark S. Robinson  Brett W. Denevi  Deborah L. Domingue 《Planetary and Space Science》2011,59(15):1895-1909

We present a global survey of candidate pyroclastic deposits on Mercury, derived from images obtained during MESSENGER flybys 1–3 that provided near-global coverage at resolutions between 5 and 0.5 km/pixel. Thirty-five deposits were identified and characterized and are located principally on the floors of craters, along rims of craters, and along the edge of the Caloris basin. Deposits are commonly centered on rimless, often irregularly shaped pits, mostly between 5 and 45 km in diameter. The deposits identified are generally similar in morphology and absolute reflectance to lunar pyroclastic deposits. Spectrally the deposits appear brighter and redder than background Mercury terrain. On the basis of the available coverage, the candidate pyroclastic deposits appear to be essentially globally distributed. The diameters of the deposits, when mapped to lunar gravity conditions, are larger than their lunar counterparts, implying that more abundant volatiles were present during the typical eruptive process than on the Moon. These observations indicate that if these deposits resulted from hawaiian-style eruptions, the volatile contents required would be between ～1600 and 16,000 ppm CO or an equivalent value of H₂O, CO₂, SO₂, or H₂S (for a more oxidizing interior), or N₂, S₂, CS₂, S₂Cl, Cl, Cl₂, or COS (for a more reducing interior). These abundances are much greater than those predicted by existing models for Mercury's formation. An apparent lack of small deposits, compared with the Moon, may be due to resolution effects, a topic that can be further assessed during the orbital phase of the MESSENGER mission. These results provide a framework within which orbital observations by MESSENGER and the future BepiColombo mission can be analyzed.  相似文献   

Lessons from co-impacts assessment under the Mitigation Action Plans and Scenarios (MAPS) Programme     

Brett Cohen  Emily Tyler  Marta Torres Gunfaus 《Climate Policy》2013,13(8):1065-1075

The MAPS Programme has been active in Brazil, Chile, Colombia and Peru in supporting the development of an evidence base to inform the processes involved in climate mitigation policy-making. The programme combines detailed quantitative analysis with an extensive stakeholder engagement process to provide policy and decision makers with the information required for long-term climate mitigation planning.

In recognition of the critical need to consider the developmental context and agenda in climate policy-making, the projects undertaken in these countries have experimented with various types of assessments of developmental impacts at both the macro and micro levels. These impacts have been collectively termed co-impacts to reflect the fact that these may be either positive or negative. In this article the value and challenges associated with co-impacts work for climate mitigation policy are considered. The value of including co-impacts analysis in the MAPS processes included increased stakeholder buy-in, making the case for mitigation action, informing INDCs and the prioritization of particular mitigation actions. Challenges include those associated with obtaining locally relevant data, the selection and operation of appropriate macro-economic models and analytical approaches and working with multidisciplinary teams.

The article concludes by making some suggestions to optimize co-impacts work, through reference to other bodies of literature. The authors highlight that this article is situated within a dominant approach to climate mitigation policy work in developing countries, which implicitly places the non-climate benefits of any action as secondary to the primary benefit of climate change mitigation and constructs an artificial separation of policy formulation and implementation. Practitioners are encouraged to reflect on the implications of these considerations in future efforts.

Policy relevance

One of the primary challenges to advancing climate mitigation policy in developing countries is that of perceived relevance: near-term development priorities are overwhelming. Identifying, understanding and engaging with the co-impacts of mitigation actions has emerged as one way of addressing this challenge. Although still at an experimental phase, experience with co-impacts analysis in the MAPS countries provides some useful lessons in how to develop this area of work.  相似文献   

In the Space of Theory: Postfoundational Geographies of the Nation-State     

Brett Christophers 《New Zealand geographer》2006,62(2):166-167

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