Disruption of Sema3A expression causes abnormal neural projection in heavy oil exposed Japanese flounder larvae     

Kawaguchi M  Song JY  Irie K  Murakami Y  Nakayama K  Kitamura S 《Marine pollution bulletin》2011,63(5-12):356-361

It has been well known that oil spills cause serious problems in the aquatic organisms. In particular, some species of teleosts, which develop on the sea surface thought to be affected by heavy oil (HO). During the embryogenesis, the nervous system is constructed. Therefore, it is important to study the toxicological effects of HO on the developing neurons. We exposed HO to eggs of Japanese flounder (Paralichthys olivaceus) and investigated the neural disorder. In larvae exposed by HO at the concentration of 8.75 mg/L, the facial and lateral line nerves partially entered into the incorrect region and the bundle was defasciculated. Furthermore, in the HO-exposed larvae, Sema3A, a kind of axon guidance molecule, was broadly expressed in second pharyngeal arch, a target region of facial nerve. Taken together, we suggested the possibility that the abnormal expression of Sema3A affected by HO exposure causes disruption of facial nerve scaffolding.  相似文献   

Carbon and oxygen isotope chemostratigraphies of the Yangtze platform,South China: Decoding temperature and environmental changes through the Ediacaran     

Miyuki Tahata  Yuichiro Ueno  Tomoko Ishikawa  Yusuke Sawaki  Kazuki Murakami  Jian Han  Degan Shu  Yong Li  Junfeng Guo  Naohiro Yoshida  Tsuyoshi Komiya 《Gondwana Research》2013,23(1):333-353

Multicellular animals first appeared on the earth during the Ediacaran period. However, the relationship between the abrupt biological evolution and environmental changes is still ambiguous. In order to examine seawater temperature and the carbon cycle through the Ediacaran, we analyzed the carbon and oxygen isotope compositions of carbonate rocks from drill cores from the Three Gorges area, South China. Importantly, the core samples include the Nantuo tillite, corresponding to the Marinoan glaciation, through the Doushantuo to the lower Dengying Fms. in ascending order.The δ¹³C profile displays five positive and five negative anomalies (PI-1 to 5 and NI-1 to 5), and the oxygen isotopes display very high absolute values around 0‰ with the highest at + 1.83‰. The combined δ¹⁸O and δ¹³C chemostratigraphies display both positive and negative correlations between the δ¹⁸O and δ¹³C values. The occurrence of the negative correlations supports the preservation of primary δ¹⁸O and δ¹³C values.The sample NI-4 has a negative correlation of the δ¹⁸O and δ¹³C excursions. The correlation supports a primary signature for both δ¹⁸O and δ¹³C variations. The positive δ¹⁸O excursion, accompanied by evidence of a eustatic sea-level fall, provides direct evidence for global cooling in the mid-Ediacaran; the 580 Ma Gaskiers Glaciation is a potential candidate for this global cooling event. The negative δ¹³C excursion was possibly caused by an increase in remineralization of dissolved organic carbon (DOC) due to enhanced continental weathering during the glaciation.Sample NI-5 is characterized by very low δ¹³C values, down to ? 10‰, corresponding to the Shuram-Wonoka-Pertatataka Excursion. The cause of the δ¹³C negative excursion is still not clear. However, a ubiquitous occurrence in excursions worldwide, and the lower δ¹³C values in deeper sections favor the enhancement of remineralization and respiration rather than secondary alteration, a restricted sea environment and lithification in coastal areas.  相似文献   

Formation Process of Zircon Associated with REE‐Fluorocarbonate and Niobium Minerals in the Nechalacho REE Deposit,Thor Lake,Canada     

Mihoko Hoshino  Yasushi Watanabe  Hiroyasu Murakami  Yoshiaki Kon  Maiko Tsunematsu 《Resource Geology》2013,63(1):1-26

The two drill holes, which penetrated sub‐horizontal rare earth element (REE) ore units at the Nechalacho REE in the Proterozoic Thor Lake syenite, Canada, were studied in order to clarify the enrichment mechanism of the high‐field‐strength elements (HFSE: Zr, Nb and REE). The REE ore units occur in the albitized and potassic altered miaskitic syenite. Zircon is the most common REE mineral in the REE ore units, and is divided into five types as follows: Type‐1 zircon occurs as discrete grains in phlogopite, and has a chemical character similar to igneous zircon. Type‐2 zircon consists of a porous HREE‐rich core and LREE–Nb–F‐rich rim. Enrichment of F in the rim of type‐2 zircon suggests that F was related to the enrichment of HFSE. The core of type‐2 zircon is regarded to be magmatic and the rim to be hydrothermal in origin. Type‐3 zircon is characterized by euhedral to anhedral crystals, which occur in a complex intergrowth with REE fluorocarbonates. Type‐3 zircon has high REE, Nb and F contents. Type‐4 zircon consists of porous‐core and ‐rim, but their chemical compositions are similar to each other. This zircon is a subhedral crystal rimmed by fergusonite. Type‐5 zircon is characterized by smaller, porous and subhedral to anhedral crystals. The interstices between small zircon grains are filled by fergusonite. Type‐4 and type‐5 zircon grains have low REE, Nb and F contents. Type‐1 zircon is only included in one unit, which is less hydrothermally altered and mineralized. Type‐2 and type‐3 zircon grains mainly occur in the shallow units, while those of type‐4 and type‐5 are found in the deep units. The deep units have high HFSE contents and strongly altered mineral textures (type‐4 and type‐5) compared to the shallow units. Occurrences of these five types of zircon are different according to the depth and degree of the hydrothermal alteration by solutions rich in F and CO₃, which permit a model for the evolution of the zircon crystallization in the Nechalacho REE deposit as follows: (i) type‐1 (discrete magmatic zircon) is formed in miaskitic syenite. (ii) LREE–Nb–F‐rich hydrothermal zircon formed around HREE‐rich magmatic zircon (type‐2). (iii) type‐3 zircon crystallized through the F and CO₃‐rich hydrothermal alteration of type‐2 zircon which formed the complex intergrowth with REE fluorocarbonates; (iv) the CO₃‐rich hydrothermal fluid corroded type‐3, forming REE–Nb‐poor zircon (type‐4). Niobium and REE were no longer stable in the zircon structure and crystallized as fergusonite around the REE–Nb‐leached zircon (type‐4); (v) type‐5 zircon is formed by the more CO₃‐rich hydrothermal alteration of type‐4 zircon, suggested by the fact that type‐4 and type‐5 zircon grains are often included in ankerite. Type‐3 to type‐5 zircon grains at the Nechalacho REE deposit were continuously formed by leaching and/or dissolution of type‐2 zircon in the presence of F‐ and/or CO₃‐rich hydrothermal fluid. These mineral associations indicate that three representative hydrothermal stages were present and related to HFSE enrichment in the Nechalacho REE deposit: (i) F‐rich hydrothermal stage caused the crystallization of REE–Nb‐rich zircon (type‐2 rim and type‐3), with abundant formation of phlogopite and fluorite; (ii) F‐ and CO₃‐rich hydrothermal stage led to the replacement of a part of REE–Nb–F‐rich zircon by REE fluorocarbonate; and (iii) CO₃‐rich hydrothermal stage resulted in crystallization of the REE–Nb–F‐poor zircon and fergusonite, with ankerite. REE and Nb in hydrothermal fluid at the Nechalacho REE deposit were finally concentrated into fergusonite by way of REE–Nb–F‐rich zircon in the hydrothermally altered units.  相似文献   

Effect assessment of debris flow mitigation works based on numerical simulation by using Kanako 2D     

Jinfeng Liu  Kana Nakatani  Takahisa Mizuyama 《Landslides》2013,10(2):161-173

Mitigation works are very essential for mitigation of debris-flow hazards in mountainous areas. Usually, it is difficult to assess the effectiveness of existing mitigation works in a catchment. This paper presented a method for quantitative assessment of debris flow mitigation measures by using Kanako system, a user-friendly GUI-equipped debris flow simulator that allows good visualization and easy interpretation. Kanako 2D (Ver. 2.04) was applied to a case study at Caijia Gully, Sichuan Province, China. Mitigation works including check dams, drainage channel, and deposition basin were constructed in the gully in 2001 and 2006. Kanako 2D can simulate debris flow from steep area to alluvial fan. 1D simulation was applied for assessing the effect of the check dams at the lower part of the gully, and 2D simulation was applied for the effect of the drainage channel and deposition basin on the alluvial fan. The simulation results indicate that debris flow will cause great damage to residential area on the alluvial fan if mitigation measures were not implemented in the gully. For old dams which have been filled up with deposits of previous debris flows, the results show that they still have the function for controlling debris flow due to the gradient reduction of the channel bed in front of the dams by the trapped debris flow deposition. After the comprehensive control of debris flow including trapping, drainage, and deposition in the gully, the simulation results indicate that the risk on the alluvial fan can be reduced to an acceptable level.  相似文献   

Relationship between macrobenthos and physical habitat characters in tidal flat in eastern Seto Inland Sea, Japan     

Otani S  Kozuki Y  Kurata K  Ueda K  Nakai S  Murakami H 《Marine pollution bulletin》2008,57(1-5):142-148

The investigations were carried out at 6 tidal flats located on the eastern part of the Seto Inland Sea, Japan. This study was focused on physical characteristics of sediments, namely as particle size of sediment and difference in elevation, and generalizes the relationship between sediments and macrobenthos. A total of 192 species were collected at 187 stations at 6 tidal flats. Physical characteristics of sediment were classified into 9 groups by cluster analysis in relation to sediment particle size and difference in elevation. Those groups had also significant difference in physical characteristics of sediments, and were characterized by some specific macrobenthos species. Distribution of macrobenthos can be explained by the classification of physical characteristics of sediment. These findings show the possibility to predict the variety of macrobenthos community using the physical characteristics of sediment.  相似文献   

Possible observational evidence for the θ⁻² angular distribution of the opening half-angle of gamma-ray burst jets     

Daisuke Yonetoku  Ryo Yamazaki  Takashi Nakamura  Toshio Murakami 《Monthly notices of the Royal Astronomical Society》2005,362(3):1114-1118

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Landfill development in the urban fringe of Metro Manila     

Yuji Hara  Kazuhiko Takeuchi  Armando M. Palijon  Akinobu Murakami 《GeoJournal》2008,71(2-3):127-141

In low-lying areas of urban and suburban regions in Asia, the use of landfill has allowed urban land use to encroach onto watery landforms, such as back marshes, which were formerly used as rice fields. To improve understanding of the associations between land-use patterns and landfill development, we carried out a case study in the urban fringe of Metro Manila in the Philippines. We examined landfill volume derived from land-use change using GIS, and field surveyed qualitative aspects of the landfill used. We calculated the rate of application of landfill in low-lying housing development areas to be 5.0 × 10³ m³ km^?2 year^?1, most of which consisted of offsite disposal of construction waste or crushed rock produced by urban development and renewal on the adjoining uplands. The flow of fill material from offsite sources to onsite landfill development areas was on the basis of individual agreements between suppliers and developers.  相似文献   

The development of Fe-nodules surrounding biological material mediated by microorganisms     

Hidekazu Yoshida  Koshi Yamamoto  Yuki Murakami  Nagayoshi Katsuta  Toru Hayashi  Takeshi Naganuma 《Environmental Geology》2008,55(6):1363-1374

Takashikozo is a phenomenon of Quaternary sediments in Japan. They are cylindrical Fe-oxyhydroxide nodules that form as plaques round plant roots, where Fe is preferentially concentrated to develop a solid wall. Structural features suggest that after the roots have decayed, the central space where the roots were situated acts as a flow path for oxidized water. Analysis of microbial 16S rDNA extracted from the nodules identified iron-oxidizing bacteria encrusted round the roots where they are the likely initiators of nodule formation. Direct microscopic observation revealed an accumulation of Fe-oxyhydroxides that fill the pore spaces and is also likely to be linked with the encrusting microbial colonies. Geological history and nanofossil evidence suggest that these Fe-nodules may have been buried at a depth of up to several tens of meters for at least 10⁵ years in reducing Quaternary sediments. Thus Fe-oxyhydroxide nodules that have formed in a geological environment at the interfaces between water and rock by microbial mediation can persist under reducing conditions. If this is the case, the phenomenon is significant as an analogue of post-closure conditions in radioactive waste repositories, since it could influence nuclide migration.  相似文献   

Back-arc rifting in the Izu-Bonin Island Arc: Structural evolution of Hachijo and Aoga Shima Rifts   总被引：1，自引：0，他引：1  

Adam  Klaus Brian  Taylor Gregory F.  Moore Fumitoshi  Murakami Yukinobu  Okamura 《Island Arc》1992,1(1):16-31

Abstract Multi- and single-channel seismic profiles are used to investigate the structural evolution of back-arc rifting in the intra-oceanic Izu-Bonin Arc. Hachijo and Aoga Shima Rifts, located west of the Izu-Bonin frontal arc, are bounded along-strike by structural and volcanic highs west of Kurose Hole, North Aoga Shima Caldera and Myojin Sho arc volcanoes. Zig-zag and curvilinear faults subdivide the rifts longitudinally into an arc margin (AM), inner rift, outer rift and proto-remnant arc margin (PRA). Hachijo Rift is 65 km long and 20–40 km wide. Aoga Shima Rift is 70 km long and up to 45 km wide. Large-offset border fault zones, with convex and concave dip slopes and uplifted rift flanks, occur along the east (AM) side of the Hachijo Rift and along the west (PRA) side of the Aoga Shima Rift. No cross-rift structures are observed at the transfer zone between these two regions; differential strain may be accommodated by interdigitating rift-parallel faults rather than by strike- or oblique-slip faults. In the Aoga Shima Rift, a 12 km long flank uplift, facing the flank uplift of the PRA, extends northeast from beneath the Myojin Knoll Caldera. Fore-arc sedimentary sequences onlap this uplift creating an unconformity that constrains rift onset to ～1-2Ma. Estimates of extension (～3km) and inferred age suggest that these rifts are in the early syn-rift stage of back-arc formation. A two-stage evolution of early back-arc structural evolution is proposed: initially, half-graben form with synthetically faulted, structural rollovers (ramping side of the half-graben) dipping towards zig-zagging large-offset border fault zones. The half-graben asymmetry alternates sides along-strike. The present ‘full-graben’ stage is dominated by rift-parallel hanging wall collapse and by antithetic faulting that concentrates subsidence in an inner rift. Structurally controlled back-arc magmatism occurs within the rift and PRA during both stages. Significant complications to this simple model occur in the Aoga Shima Rift where the east-dipping half-graben dips away from the flank uplift along the PRA. A linear zone of weakness caused by the greater temperatures and crustal thickness along the arc volcanic line controls the initial locus of rifting. Rifts are better developed between the arc edifices; intrusions may be accommodating extensional strain adjacent to the arc volcanoes. Pre-existing structures have little influence on rift evolution; the rifts cut across large structural and volcanic highs west of the North Aoga Shima Caldera and Aoga Shima. Large, rift-elongate volcanic ridges, usually extruded within the most extended inner rift between arc volcanoes, may be the precursors of sea floor spreading. As extension continues, the fissure ridges may become spreading cells and propagate toward the ends of the rifts (adjacent to the arc volcanoes), eventually coalescing with those in adjacent rift basins to form a continuous spreading centre. Analysis of the rift fault patterns suggests an extension direction of N80°E ± 10° that is orthogonal to the trend of the active volcanic arc (N10°W). The zig-zag pattern of border faults may indicate orthorhombic fault formation in response to this extension. Elongation of arc volcanic constructs may also be developed along one set of the possible orthorhombic orientations. Border fault formation may modify the regional stress field locally within the rift basin resulting in the formation of rift-parallel faults and emplacement of rift-parallel volcanic ridges. The border faults dip 45–55° near the surface and the majority of the basin subsidence is accommodated by only a few of these faults. Distinct border fault reflections decreases dips to only 30° at 2.5 km below the sea floor (possibly flattening to near horizontal at 2.8 km although the overlying rollover geometry shows a deeper detachment) suggesting that these rifting structures may be detached at extremely shallow crustal levels.  相似文献   

Case study of debris flow disaster scenario caused by torrential rain on Kiyomizu-dera,Kyoto, Japan - using Hyper KANAKO system     

Kana?NakataniEmail author  Satoshi?Hayami  Yoshifumi?Satofuka  Takahisa?Mizuyama 《山地科学学报》2016,13(2):193-202

This paper presents debris-flow numerical simulations using the Hyper KANAKO system, developed by the authors. The system uses the debris flow simulator KANAKO 2D equipped with a graphical user interface (GUI); hence, a user can easily produce appropriate landform data for simulations using standard laser profiler data, and visualize the results using a GIS. Hyper KANAKO was applied to the streams around Kiyomizu-dera in Kyoto, Japan. Kiyomizu-dera is a famous temple in Japan which is visited by numerous tourists throughout the year. We simulated a disaster scenario of debris flow caused by torrential rain. We set the hydrograph using rainfall intensity data, and set the landform data using information from the Geospatial Information Authority of Japan (GSI) and a digital elevation model (DEM). We evaluated different mesh sizes and also used a digital surface model (DSM) to consider the building heights. The simulation results showed that with small mesh size, the debris flow moved through the roads, which seems realistic for a disaster situation. When buildings were considered, the flow direction changed, and a 1-m flow depth, which was deeper than in other cases, appeared in the flow path. This may pose a dangerous situation for evacuations.  相似文献