Efficient execution of the WRF model and other HPC applications in the cloud     

Hector A. Duran-Limon  Jesus Flores-Contreras  Nikos Parlavantzas  Ming Zhao  Angel Meulenert-Peña 《Earth Science Informatics》2016,9(3):365-382

There are many scientific applications that have high performance computing (HPC) demands. Such demands are traditionally supported by cluster- or Grid-based systems. Cloud computing, which has experienced a tremendous growth, emerged as an approach to provide on-demand access to computing resources. The cloud computing paradigm offers a number of advantages over other distributed platforms. For example, the access to resources is flexible and cost-effective since it is not necessary to invest a large amount of money on a computing infrastructure nor pay salaries for maintenance functions. Therefore, the possibility of using cloud computing for running high performance computing applications is attractive. However, it has been shown elsewhere that current cloud computing platforms are not suitable for running some of these kinds of applications since the performance offered is very poor. The reason is mainly the overhead from virtualisation which is extensively used by most cloud computing platforms as a means to optimise resource usage. Furthermore, running HPC applications in current cloud platforms is a complex task that in many cases requires configuring a cluster of virtual machines (VMs). In this paper, we present a lightweight virtualisation approach for efficiently running the Weather Research and Forecasting (WRF) model (a computing- and communication-intensive application) in a cloud computing environment. Our approach also provides a higher-level programming model that automates the process of configuring a cluster of VMs. We assume such a cloud environment can be shared with other types of HPC applications such as mpiBLAST (an embarrassingly parallel application), and MiniFE (a memory-intensive application). Our experimental results show that lightweight virtualisation imposes about 5 % overhead and it substantially outperforms traditional heavyweight virtualisation such as KVM.  相似文献   

Determination of oxadiazon residues in the field treated soil with and without organic matter incorporated     

Kassio Ferreira Mendes  Marcelo Rodrigues dos Reis  Ana Beatriz Rocha de Jesus Passos  Miriam Hiroko Inoue  Antônio Alberto Silva  Daniel Valadão Silva 《Environmental Earth Sciences》2016,75(3):222

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Gas tracer transport in a heterogeneous fracture in two-phase flow conditions. Experimental and modeling results     

Jorge Jódar  Agustín Medina  Jesús Carrera 《Advances in water resources》2011,34(11):1401-1412

Large amounts of gas can result from anaerobic corrosion of metals and from chemical and biological degradation of organic substances in underground repositories for radioactive waste. Gas generation may lead to the formation of a buoyant gas phase bubble (i.e. zone with increased gas saturation surrounded by water) and to the migration of radioactive gaseous species. In this situation, gaseous species migration is controlled by (1) advection, dispersion and diffusion within the gas bubble, and (2) dissolution in the water surrounding the gas bubble and diffusion of the dissolved species away from the interface. A number of gas tracer tests were performed in the framework of the GAs Migration (GAM) project to study the role played by dissolution/diffusion phenomena in gas transport. Tracers were selected to display a large range of solubility and diffusion coefficients, which should have led to significant chromatographic separation in the breakthrough curves (BTCs) of the tracers. However, measured BTCs displayed much smaller chromatographic separation than expected. These curves were interpreted using (1) a numerical model of multiphase flow and tracer transport in the fracture plane and diffusion into the immobile water, and (2) a simple two box model. Results showed that dissolution/diffusion into immobile water regions played a small role, and tailing appears to have been largely controlled by diffusion into dead gas volumes, such as boreholes.  相似文献   

Development of an Improved Methodology to Assess Potential Unconventional Gas Resources     

Jesus Salazar  Duane A. McVay  W. John Lee 《Natural Resources Research》2010,19(4):253-268

Considering the important role played today by unconventional gas resources in North America and their enormous potential for the future around the world, it is vital to both policy makers and industry that the volumes of these resources and the impact of technology on these resources be assessed. To provide for optimal decision making regarding energy policy, research funding, and resource development, it is necessary to reliably quantify the uncertainty in these resource assessments. Since the 1970s, studies to assess potential unconventional gas resources have been conducted by various private and governmental agencies, the most rigorous of which was by the United States Geological Survey (USGS). The USGS employed a cell-based, probabilistic methodology which used analytical equations to calculate distributions of the resources assessed. USGS assessments have generally produced distributions for potential unconventional gas resources that, in our judgment, are unrealistically narrow for what are essentially undiscovered, untested resources. In this article, we present an improved methodology to assess potential unconventional gas resources. Our methodology is a stochastic approach that includes Monte Carlo simulation and correlation between input variables. Application of the improved methodology to the Uinta–Piceance province of Utah and Colorado with USGS data validates the means and standard deviations of resource distributions produced by the USGS methodology, but reveals that these distributions are not right skewed, as expected for a natural resource. Our investigation indicates that the unrealistic shape and width of the gas resource distributions are caused by the use of narrow triangular input parameter distributions. The stochastic methodology proposed here is more versatile and robust than the USGS analytic methodology. Adoption of the methodology, along with a careful examination and revision of input distributions, should allow a more realistic assessment of the uncertainty surrounding potential unconventional gas resources.  相似文献   

NGC 3147: a 'true' type 2 Seyfert galaxy without the broad-line region     

S. Bianchi  A. Corral  F. Panessa  X. Barcons  G. Matt  L. Bassani  F. J. Carrera  E. Jiménez-Bailón 《Monthly notices of the Royal Astronomical Society》2008,385(1):195-199

We report on simultaneous optical and X-ray observations of the Seyfert galaxy, NGC 3147. The XMM–Newton spectrum shows that the source is unabsorbed in the X-rays  ( N _H < 5 × 10²⁰ cm⁻²)  . On the other hand, no broad lines are present in the optical spectrum. The origin of this optical/X-rays misclassification (with respect to the Unification Model) cannot be attributed to variability, since the observations in the two bands are simultaneous. Moreover, a Compton-thick nature of the object can be rejected on the basis of the low-equivalent width of the iron Kα line (≃130 eV) and the large ratio between the 2–10 keV and the [O  iii ] fluxes. It seems therefore inescapable to conclude that NGC 3147 intrinsically lacks the Broad-Line Region, making it the first 'true' type 2 Seyfert galaxy.  相似文献   

An integrated paleomagnetic study of Rio Grande de Santiago volcanic succession (trans-Mexican volcanic belt): revisited   总被引：1，自引：0，他引：1  

Avto Goguitchaichvili  Luis Alva-Valdivia  Jose Rosas-Elguera  Jaime Urrutia-Fucugauchi  Jose Antonio Gonzalez  Juan Morales  Jesus Sol 《Physics of the Earth and Planetary Interiors》2002,130(3-4):175-194

We carried out an integrated paleomagnetic, rock-magnetic and paleointensity study of Miocene volcanic succession from the trans-Mexican volcanic belt (TMVB) north of Guadalajara. A total of 37 consecutive basaltic lava flows (326 oriented standard paleomagnetic cores) were collected at Lazo locality. Continuous susceptibility measurements with temperature and hysteresis experiments yield in most cases reasonably reversible curves with Curie points close to that of pseudo-single-domain magnetite. Two geomagnetic reversals were observed in the 300 m thick composite section. Paleosecular variation was lower than the one observed in general during Miocene. It appears that the volcanic units have been emplaced during a relatively short time span of about 1 Ma. The mean paleomagnetic directions obtained from this study do not differ significantly from that expected for the middle Miocene. The mean paleomagnetic direction calculated from all data is I=31.1°, D=354.6°, k=124 and ₉₅=2.1°, N=37. Seventy-two samples with apparently preserved primary magnetic mineralogy and without secondary magnetization, mostly belonging to reverse polarity chron were pre-selected for Thellier paleointensity determination. The flow-mean paleointensity values are ranging from 22.4±3.4 to 53.8±6.0 μT and the corresponding virtual dipole moments (VDMs) are ranging from (5.4±0.8) to (12.0±1.4)×10²² A m². This corresponds to mean value of (7.7±2.2)×10²² A m², which is close to present day geomagnetic field strength. Altogether, our data suggest the existence of relatively high geomagnetic field strength undergoing low fluctuations.  相似文献   

Deep seismic refraction and gravity crustal model and tectonic deformation in Tocantins Province, Central Brazil     

Jesus Berrocal  Yara Marangoni  Nelsí C. de S  Reinhardt Fuck  Jos E.P. Soares  E. Dantas  Fbio Perosi  Celia Fernandes 《Tectonophysics》2004,388(1-4):187

Interpretation of seismic refraction data in the central sector of Tocantins Province, Central Brazil, has produced a seismic crustal model with well-defined upper, intermediate, and lower crust layers having smooth velocity gradient in each layer. The depths to Moho vary from 32 to 43 km, and mean crustal P velocity varies from 6.3 km/s, beneath Goiás magmatic arc on the western side, to 6.4 km/s, below Goiás massif in the central portion and the foreland fold-and-thrust belt on the eastern side. The behaviour of the lower crust layer allows an improved understanding of regional gravimetric features of the central and northern sectors of Tocantins Province and suggests subduction of the Amazon plate in Central Brazil. In the southeastern sector, the refraction experiment resulted in the detection of a thinner crust (38 km) below Brasília fold belt and a thicker crust (41 km) below Paraná basin and São Francisco craton (42 km). The upper crust beneath Paraná Basin is around 20 km thick, whereas it is less than 10 km thick below the craton. These results bring new insights into the geological history of the central and southeastern sectors of Tocantins Province.Gravimetric measurements in the central sector of Tocantins Province delineate a high and a low anomaly separated by a steep gradient with a NE direction. The axis of the gradient seems to bend still further to NE in the northern sector of that province, whereas the gravimetric high continues northwards, defining a separation between them. This suggests that those features belong to different tectonic processes that occurred during Tocantins Province orogenesis. The gravimetric model, which incorporates seismically resolved structure beneath Tocantins Province, better matches the observed gravimetric data.Although tectonic movements have only been monitored with high-precision GPS for short time interval (1999–2001), the results suggest observable deformations. The main seismicity of Central Brazil, the Goiás–Tocantins seismic belt, seems to be spatially associated with the large gravimetric high anomaly and with the observed tectonic deformation.  相似文献   

Effect of turbulence and inorganic carbon supply on growth ofDunaliella viridis Teodoresco     

Carlos Jiménez  Jesus Mercado  José Aguilera  J. M. rodriguez-Maroto  F. X. Niell 《International Journal of Salt Lake Research》1995,4(3):223-232

Turbulence is known to enhance growth in microalgae. We studied the possible effects of the extra inorganic carbon supplied to the cultures when air bubbling is the source of turbulence. A set of experiments was carried out to separate the effects of the subsidiary action of agitation on growth from those due to possible carbon enrichment from air CO₂ when air bubbling was the source of mixing. It was found that air bubbling does not induce an increase of the concentration of inorganic carbon in HCO ₃ ^– -enriched growth media, and that no differences appear between air-bubbled and CO₂-free air-bubbled cultures. On the other hand, photosynthetic O₂ was accumulated in the medium in non-mixed cultures, which showed higher respiration and lower photosynthetic rates, probably due to photoinhibition induced by oversaturation of O₂. Growth rate, maximal cell density and photosynthetic efficiency were higher in aerated cultures than in non-aerated ones.  相似文献   

Carbonate platform drowning caught in the act: The sedimentology of Saya de Malha Bank (Indian Ocean)     

Christian Betzler  Sebastian Lindhorst  John J. G. Reijmer  Juan Carlos Braga  Thomas Lüdmann  Or M. Bialik  Jesus Reolid  Anna-Lena Geßner  Dagmar Hainbucher  Dass Bissessur 《Sedimentology》2023,70(1):78-99

Mesophotic reefs, hardgrounds and current-controlled pelagic to hemipelagic carbonates are facies marking carbonate platform drowning successions, irrespective of the factors controlling this evolution. A modern analogue of a carbonate platform in a state of drowning, where these facies occur has not been properly reported on to date. In the present study, the sedimentary environments of the Saya de Malha Bank are characterized using a multi-disciplinary approach including sedimentology, hydroacoustics, seismics and oceanography. The Saya de Malha Bank edifice with a surface of 40 808 km² is located in the tropical Indian Ocean and lies in a water depth of 8 to 300 m extending from the surrounding more than 2000 m deep ocean floor, with no reef reaching the sea surface. Mesophotic coral and red algal facies co-exist with hemipelagic and bioclastic sands, together with a hardground. Ocean currents and internal waves are identified as major sedimentological controlling factors in the absence of elevated nutrient influx. Many features distributed along the present-day Saya de Malha Bank were described from studies presenting fossil examples of carbonate platform drowning. The results herein can therefore be applied to other drowning examples, in some cases allowing for more accurate interpretation of the stratigraphic record.  相似文献   

Tebuthiuron leaching in three Brazilian soils as affected by soil pH     

Autieres Teixeira Faria  Matheus Freitas Souza  Ana Beatriz Rocha de Jesus Passos  Antonio Alberto da Silva  Daniel Valadão Silva  José Cola Zanuncio  Paulo Roberto Ribeiro Rocha 《Environmental Earth Sciences》2018,77(5):214

Underground contamination water by herbicides depends on the interactions between their molecules with physical and chemical soil characteristics and climatic conditions. Studies with columns can estimate the leaching potential of herbicides in soils. This study aimed to determine the effect of soil pH on tebuthiuron leaching, and capacity of bioindicators to detect tebuthiuron residues in three Brazilian soils. Cucumber plants (Cucumis sativus) were more negatively affected when grown in soils with lower amounts of organic matter and clay, and in these soils, the tebuthiuron levels reached greater depths in the column. There was a positive correlation between tebuthiuron concentration and cucumber intoxication, and a negative correlation between tebuthiuron concentration and dry matter cucumber in all soils. The tebuthiuron leached up to 50 cm depth even in soils with higher organic matter and clay content. The increasing of soil pH can affect the leaching of nonionic herbicides, and liming practice may elevate the environmental contamination risk by tebuthiuron. The bioindicator method using Cucumis sativus is viable and can be recommended to detect tebuthiuron concentrations above 0.2 mg kg^?1.  相似文献