An alkaline unwinding assay for the detection of DNA damage in aquatic organisms     

Lee Shugart 《Marine environmental research》1988,24(1-4)

This paper reports a rapid and facile procedure for obtaining of DNA from small, whole aquatic organisms (fathead minnow, Pimephales promelas) as well as from the liver of another species (bluegill sunfish, Lepomis macrochirus) and the subsequent estimation of its double strandedness. DNA was isolated from various tissues by homogenization in a basic pH solution containing detergent followed by differential extraction using organic solvents. Additional purification was accomplished by molecular sieve chromatography. Under defined alkaline unwinding conditions, the amount of double-stranded and single-stranded DNA was determined using the bisbenzimidazole dye Hoechst 33258. The technique was used to detect the occurrence of strand breaks in DNA of fathead minnows chemically exposed to benzo[a]pyrene.  相似文献   

Internal generation of waves: Delta source function method and source term addition method     

Gunwoo Kim  Changhoon Lee  Kyung-Duck Suh   《Ocean Engineering》2007,34(17-18):2251-2264

In this study, we investigate two internal wave generation methods in numerical modeling of time-dependent equations for water wave propagation, i.e., delta source function method and source term addition method, the latter of which has been called the line source method in literatures. We derive delta source functions for the Boussinesq-type equations and extended mild-slope equations. By applying the fractional step splitting method, we show that the delta source function method is equivalent to the source term addition method employing the energy velocity. This suggests that the energy velocity should be used rather than the phase velocity for the transport of incident wave energy in the source term addition method. Finally, the performance of the delta source function method is verified by accurately generating nonlinear cnoidal waves as well as linear waves for horizontally one-dimensional cases.  相似文献   

Generation of random waves in time-dependent extended mild-slope equations using a source function method     

Gunwoo Kim  Changhoon Lee  Kyung-Duck Suh   《Ocean Engineering》2006,33(14-15):2047-2066

We develop techniques of numerical wave generation in the time-dependent extended mild-slope equations of Suh et al. [1997. Time-dependent equations for wave propagation on rapidly varying topography. Coastal Engineering 32, 91–117] and Lee et al. [2003. Extended mild-slope equation for random waves. Coastal Engineering 48, 277–287] for random waves using a source function method. Numerical results for both regular and irregular waves in one and two horizontal dimensions show that the wave heights and the frequency spectra are properly reproduced. The waves that pass through the wave generation region do not cause any numerical disturbances, showing usefulness of the source function method in avoiding re-reflection problems at the offshore boundary.  相似文献   

Effects of salinity, temperature and food type on the uptake and elimination rates of cd, cr, and zn in the asiatic clamcorbicula fluminea     

Jung -Suk Lee  Byeong -Gweon Lee 《Ocean Science Journal》2005,40(2):79-89

Laboratory radiotracer experiments were conducted to determine assimilation efficiencies (AE) from ingested algal food and oxic sediment particles, uptake rates from the dissolved phase, and the efflux rates of Cd, Cr and Zn in the Asiatic clamCorbicula fluminea. Among three elements, AE from both algal and sediment food was greatest for Cd, followed by Zn and Cr. The AEs of tested elements from algal food(Phaeodactylum tricornutum) were consistently higher than those from sediments at a given salinity and temperature. The influence of salinity (0, 4 and 8 psu) and temperature (5, 13 and 21¼) on the metal AEs was not evident for most tested elements, except Cd AEs from sediment. The rate constant of metal uptake from the dissolved phase (k _u was greatest for Cd, followed by Zn and Cr in freshwater media. However, in saline water, thek _u of Zn were greater than those of Cd. The influx rate of all tested metals increased with temperature. The efflux rate constant was greatest for Cr (0.02 d^-1), followed by Zn (0.010~0.017 d^-1) and Cd (0.006 d^-1). The efflux rate constant for Zn in clam tissues depurated in 0 psu (0.017 d^-1) was faster than that in 8 psu (0.010 d^-1). Overall results showed that the variation of salinity and temperature in estuarine systems can considerably influence the metal bioaccumulation potential in the estuarine clamC. fluminea. The relatively high Cd accumulation capacity ofC. fluminea characterized by the high AE, high dissolved influx rate and low efflux rate, suggested that this clam species can be used as an efficient biomonitor for the Cd contamination in freshwater and estuarine environments.  相似文献   

Cloning of cytochrome P450 1A (CYP1A) genes from the hermaphrodite fish Rivulus marmoratus and the Japanese medaka Oryzias latipes     

Kim IC  Kim YJ  Yoon YD  Kawamura S  Lee YS  Lee JS 《Marine environmental research》2004,58(2-5):125-129

To use two small fish Rivulus marmoratus (Cyprinodontiformes, Rivulidae) and the Japanese medaka Oryzias latipes (Belloniformes) as testing models in molecular ecotoxicology, we have cloned the cytochrome P450 1A (CYP1A) gene after screening of both genomic DNA libraries, and sequenced 11,863 and 7,243 bp including all the exons and introns with promoter regions, respectively. The Rivulus and the medaka CYP1A gene consisted of seven exons (including non-coding exons) with high homology to mammals. In the promoter region, Rivulus CYP1A gene has seven xenobiotic response elements (XREs) and two metal response elements (MREs), while the Japanese medaka CYP1A gene has six XREs and four MREs. Interestingly, medaka CYP1A gene has a number of MREs at the promoter, which may affect its response on metal exposure. We describe here the gene structure of both fish CYP1A genes.  相似文献   

台湾海峡表层月平均流速与两岸月平均水位差的关系     

管秉贤 《海洋科学集刊》1980,(16):1-12

海洋中大多数区域的海流，特别是流速较强的海流，其性质以地转流为主。所以，海流流速流向的变化与海面的横流坡度，亦即横流两侧的水位差有着密切的关系。 一百多年前，Peslin(1872)首先将地转方程应用于墨西哥湾流上。后来，Dietrich(1946)引用丹麦灯船上所进行的海流观测结果和卡特加特海峡两侧岛上的水位观测结果，证实了地转方程的实用意义。 到目前为止，已有许多作者应用流速和横流水位差的这一关系，探讨了世界大洋和海峡等处海流的变动规律。例如，Montgomery(1938,1941)，Hela(1952)，Stommel(1953)及Wunsch等(1969)讨论了佛罗里达海流和湾流的季节变化与水位的关系；森安茂松(Moriyasu, 1961)和二谷颖男(1973)等讨论了水位与黑潮海况以及流速流量的关系；Wyrtki(1973, 1974a, 1974b)研究了西太平洋赤道流、赤道逆流流速流量的季节变化和海流两侧岛屿的水位差的关系。还有Sok-U Yi(1970)研究了朝鲜海峡中水位与对马暖流表层流速季节变化的关系；ΓaлepKИЧ等(1962)也曾讨论了爪哇海水位与流速的关系。 关于我国的台湾海峡，Wyrtki(1957,1961) 曾给出了台湾海峡表层流速的季节变化曲线，并将流速与高雄-澳门断面的水位差作了比较，绘制了两者的相关图。 现在，几乎普遍地认为：沿岸和岛屿上所进行的水位观测，可为研究海流变动规律提供方便、准确和连续的资料，是监视海流变动最合适的途径之一。 本文应用手头所有的资料，一方面从多年平均情况来讨论台湾海峡表层月平均流速与两岸月平均水位差的关系；另一方面以各年各月情况为例，来分析两岸水位差与海峡西岸水位的关系，供研究台湾海峡海流趋势预报方法时参考。  相似文献   

Circulation     

Thomas N. Lee  Leonard J. Pietrafesa 《Progress in Oceanography》1987,19(3-4)

Low-frequency current and temperature variability on the southeast US continental shelf during summer conditions of weak wind forcing and vertical stratification was found to be similar in many aspects to previous findings for winter, when stronger wind forcing and vertical homogeneity prevails. Subtidal variability in the outer shelf is dominated by the weekly occurrence of Gulf Stream frontal eddies and meanders. These baroclinic events strongly affect the balance of momentum in the outer shelf, but not at mid-shelf. A negative alongshore sea level slope of order −10⁻⁷ is required to balance mean along-shelf momentum at the shelf edge, similar to oceanic estimates, and can contribute to the observed northward mean flow over the shelf.Low-frequency flow at mid-shelf and coastal sea level fluctuations appear to occur as a forced wave response to local alongshore wind stress events that are coherent over the shelf domain. Momentum balances indicate a trapped wave response similar to the arrested topographic wave found in the mid-Atlantic Bight (CSANADY, 1978). Density driven currents from river discharge do not appear to be significant at mid-shelf. Cold, subsurface intrusions of deeper, nutrient rich Gulf Stream waters can occasionally penetrate to mid- and inner-shelf regions north of Cape Canaveral, causing strong phytoplankton and zooplankton responses. These events were observed following the simultaneous occurrence of upwellings from northward winds and Gulf Stream frontal eddies at the shelf break during periods when the Stream was in an onshore position. Subsurface Gulf Stream intrusions to mid-shelf occur only during the summer, when the shelf is vertically stratified and cross-shelf density gradients do not present a barrier as in winter.  相似文献   

Abundance, distribution and patch formation of zooplankton     

Gustav-Adolf Paffenhfer  Byron K. Sherman  Thomas N. Lee 《Progress in Oceanography》1987,19(3-4)

The goal of studies described here was to determine the responses of zooplankton taxa to phytoplankton patches which develop in and near intrusions of cold, nutrient-rich Gulf Stream water. To achieve this goal we determined the horizontal and vertical distributions of abundant mesozooplankton taxa on the south-eastern continental shelf of the USA between 29°30′ and 31°N. The study period was from June 23 to August 16, 1981. Highest concentrations of zooplankton usually occurred in and near patches of phytoplankton. Increased phytoplankton appeared to trigger the formation of patches of the calanoid copepod Temora turbinata and the cyclopoid copepods Oithona spp. and Oncaea spp. The patches of zooplankton had greater alongshore than cross-shelf dimensions. T. turbinata responded rapidly to increased concentrations of phytoplankton by reproducing and aggregating in and above intruded waters. Oithonidae which were often, but not always, abundant in phytoplankton patches eventually attained high concentrations over most of the middle and part of the inner shelf. Their concentration and that of Oncaeidae increased steadily. Oncaeidae were not abundant in recently upwelled waters, as was T. turbinata but reached high concentrations in older intrusions when the abundance of T. turbinata remained level or decreased slowly. Both cyclopoid taxa are thought to reproduce slowly (egg sacs) compared to T. turbinata. Another taxon, the doliolids, became abundant far more rapidly in intruded waters (by asexual reproduction) than did the other three taxa. Doliolids were the most opportunistic intrusion zooplankton form. They do not regularly occur in low abundance on the shelf, as do the three copepod taxa, but develop in pulses in regions where T. turbinata and Oncaea are not abundant. Of the four taxa studied the abundance of doliolids increased and decreased most rapidly, whereas Oithona and Oncaea increased slowly and did not decrease during the study period. T. turbinata and Oncaea were most abundant at 60% of all stations in the intruding water. Doliolids and Oithona on the other hand, were mostly in the thermocline and intrusion. Whereas phytoplankton patches, which developed in intrusions, were physically induced (PAFFENHÖFER and LEE, 1988), patches of zooplankton were biologically induced.  相似文献   

Integration of a Multi-Stage Bulk Materials Acquisition System from the Viewpoint of Dock Operations     

Hong Tau Lee 《Marine Georesources & Geotechnology》2001,19(3):207-219

A multi-stage bulk materials acquisition system is examined from the viewpoint of dock operations. The whole process can be divided into four stages and treated as four subsystems: ships scheduling planning, material yard planning, dock arrangement, and material discharging. Since the structure and the complexity of each subsystem is different, the solution approaches applied are also different with respect to each. To increase operations efficiency and data consistency, an integration of the subsystems by coordinating the operations sequence and data communications for the four subsystems is discussed. The four subsystems are illustrated by using the material docks of China Steel Corporation, and the models developed in this research are also validated. The results indicate that the models developed are capable of deriving solutions better than the existing ones. Although the discussions are confined to China Steel Corporation, the models can be applied to other companies with similar operations.  相似文献   

Estimating the underwater light field from remote sensing of ocean color     

Cheng-Chien Liu  Richard L. Miller  Kendall L. Carder  Zhongping Lee  Eurico J. D’Sa  James E. Ivey 《Journal of Oceanography》2006,62(3):235-248

We present a new approach that incorporates two models to estimate the underwater light field from remote sensing of ocean color. The first employs a series of analytical, semi-analytical, and empirical algorithms to retrieve the spectrum of inherent optical properties (IOPs), including the absorption and the backscatter coefficients, from the spectrum of remote sensing reflectance. The second model computes the profile of photosynthetically available radiation E _0,PAR (z) for a vertically homogeneous water column using the information of the retrieved IOPs and the ambient optical environment. This computation is based on an improved look-up table technology that possesses high accuracy, comparable with the full solution of the radiative transfer equation, and meets the computational requirement of remote sensing application. This new approach was validated by in situ measurements and an extensive model-to-model comparison with a wide range of IOPs. We successfully mapped the compensation depth by applying this new approach to process the SeaWiFS imagery. This research suggests that E _0,PAR (z) can be obtained routinely from ocean-color data and may have significant implications for the estimation of global heat and carbon budget.  相似文献