Improving strategies with constraints regarding non-Gaussian statistics in a three-dimensional variational assimilation method     

Norihisa?UsuiEmail author  Shiro?Ishizaki  Yosuke?Fujii  Masafumi?Kamachi 《Journal of Oceanography》2011,67(3):253-262

We assess validity of a Gaussian error assumption, the basic assumption in data assimilation theory, and propose two kinds of constraints regarding non-Gaussian statistics. In the mixed water region (MWR) off the east coast of Japan exhibiting complicated frontal structures, a probability density function (PDF) of subsurface temperature shows double peaks corresponding to the Kuroshio and Oyashio waters. The complicated frontal structures characterized by the temperature PDF sometimes cause large innovations, bringing about a non-Gaussianity of errors. It is also revealed that assimilated results with a standard three-dimensional variational (3DVAR) scheme have some issues in MWR, arising from the non-Gaussianity of errors. The Oyashio water sometimes becomes unrealistically cold. The double peaks seen in the observed temperature PDF are too smoothed. To improve the assimilated field in MWR, we introduce two kinds of constraints, J _c1 and J _c2, which model the observed temperature PDF. The constraint J _c1 prevents the unrealistically cold Oyashio water, and J _c2 intends to reproduce the double peaks. The assimilated fields are significantly improved by using these constraints. The constraint J _c1 effectively reduces the unrealistically cold Oyashio water. The double peaks in the observed temperature PDF are successfully reproduced by J _c2. In addition, not only subsurface temperature but also whole level temperature and salinity (T–S) fields are improved by adopting J _c1 and J _c2 to a multivariate 3DVAR scheme with vertical coupled T–S empirical orthogonal function modes.  相似文献   

Ab initio calculations of the Fe(II) and Fe(III) isotopic effects in citrates,nicotianamine, and phytosiderophore,and new Fe isotopic measurements in higher plants     

Frédéric Moynier  Toshiyuki Fujii  Kun Wang  Julien Foriel 《Comptes Rendus Geoscience》2013,345(5-6):230-240

Iron is one of the most abundant transition metal in higher plants and variations in its isotopic compositions can be used to trace its utilization. In order to better understand the effect of plant-induced isotopic fractionation on the global Fe cycling, we have estimated by quantum chemical calculations the magnitude of the isotopic fractionation between different Fe species relevant to the transport and storage of Fe in higher plants: Fe(II)-citrate, Fe(III)-citrate, Fe(II)-nicotianamine, and Fe(III)-phytosiderophore. The ab initio calculations show firstly, that Fe(II)-nicotianamine is ～3‰ (⁵⁶Fe/⁵⁴Fe) isotopically lighter than Fe(III)-phytosiderophore; secondly, even in the absence of redox changes of Fe, change in the speciation alone can create up to ～1.5‰ isotopic fractionation. For example, Fe(III)-phytosiderophore is up to 1.5‰ heavier than Fe(III)-citrate₂ and Fe(II)-nicotianamine is up to 1‰ heavier than Fe(II)-citrate. In addition, in order to better understand the Fe isotopic fractionation between different plant components, we have analyzed the iron isotopic composition of different organs (roots, seeds, germinated seeds, leaves and stems) from six species of higher plants: the dicot lentil (Lens culinaris), and the graminaceous monocots Virginia wild rye (Elymus virginicus), Johnsongrass (Sorghum halepense), Kentucky bluegrass (Poa pratensis), river oat (Uniola latifolia), and Indian goosegrass (Eleusine indica). The calculations may explain that the roots of strategy-II plants (Fe(III)-phytosiderophore) are isotopically heavier (by about 1‰ for the δ⁵⁶Fe) than the upper parts of the plants (Fe transported as Fe(III)-citrate in the xylem or Fe(II)-nicotianamine in the phloem). In addition, we suggest that the isotopic variations observed between younger and older leaves could be explained by mixing of Fe received from the xylem and the phloem.  相似文献   

Nuclear field shift in natural environments     

Frédéric Moynier  Toshiyuki Fujii  Gregory A. Brennecka  Sune G. Nielsen 《Comptes Rendus Geoscience》2013,345(3):150-159

The nuclear field shift (NFS) is an isotope shift in atomic energy levels caused by a combination of differences in nuclear size and shape and electron densities at the nucleus. The effect of NFS in isotope fractionation was theoretically established by Bigeleisen in 1996 [Bigeleisen J. (1996) J. Am. Chem. Soc. 118:3676–3680] and has been analytically measured in laboratory chemical exchange reactions. More recently, some isotopic variations of heavy elements (Hg, Tl, U) measured in natural systems as well as isotopic anomalies measured for lower-mass elements in meteorites have been attributed to the NFS effect. These isotopic variations open up new and exciting fields of investigations in Earth sciences. In this paper, we review the different natural systems in which NFS has been proposed to be the origin of isotopic variations.  相似文献   

SHRIMP zircon and EPMA monazite dating of granitic rocks from the Maizuru terrane, southwest Japan: Correlation with East Asian Paleozoic terranes and geological implications   总被引：1，自引：0，他引：1  

Masahiro  Fujii  Yasutaka  Hayasaka  Kentaro  Terada 《Island Arc》2008,17(3):322-341

Abstract The Maizuru terrane, distributed in the Inner Zone of southwest Japan, is divided into three subzones (Northern, Central and Southern), each with distinct lithological associations. In clear contrast with the Southern zone consisting of the Yakuno ophiolite, the Northern zone is subdivided into the western and eastern bodies by a high-angle fault, recognized mainly by the presence of deformed granitic rocks and pelitic gneiss. This association suggests an affinity with a mature continental block; this is supported by the mode of occurrence, and petrological and isotopic data. Newly obtained sensitive high mass-resolution ion microprobe (SHRIMP) zircon U–Pb ages reveal the intrusion ages of 424 ± 16 and 405 ± 18 Ma (Siluro–Devonian) for the granites from the western body, and 249 ± 10 and 243 ± 19 Ma (Permo–Triassic) for the granodiorites from the eastern body. The granites in the western body also show inherited zircon ages of around 580 and 765 Ma. In addition, electron probe microanalysis (EPMA) monazite U–Th–total Pb dating gives around 475–460 Ma. The age of intrusion, inherited ages, mode of occurrence, and geological setting of the Siluro–Devonian granites of the Northern zone all show similarities with those of the Khanka Massif, southern Primoye, Russia, and the Hikami granitic rocks of the South Kitakami terrane, Northeast Japan. We propose that both the Siluro–Devonian and Permo–Triassic granitic rocks of the Northern zone are likely to have been juxtaposed through the Triassic–Late Jurassic dextral strike-slip movement, and to have originated from the Khanka Massif and the Hida terrane, respectively. This study strongly supports the importance of the strike-slip movement as a mechanism causing the structural rearrangement of the Paleozoic–Mesozoic terranes in the Japanese Islands, as well as in East Asia.  相似文献   

The Potential of Eleocharis acicularis for Phytoremediation: Case Study at an Abandoned Mine Site     

Nguyen Thi Hoang Ha  Masayuki Sakakibara  Sakae Sano  Rie S. Hori  Koichiro Sera 《洁净——土壤、空气、水》2009,37(3):203-208

Phytoremediation, a plant‐based and cost‐effective technology for the cleanup of contaminated soil and water, is receiving increasing attention. In this study, the aquatic macrophyte Eleocharis acicularis was examined for its ability to take up multiple heavy metals and its potential application for phytoremediation at an abandoned mining area in Hokkaido, Japan. Elemental concentrations were measured in samples of E. acicularis, water, and soil collected from areas of mine tailing and drainage. The results reveal that Pb, Fe, Cr, Cu, Ni, and Mn accumulation in the plants increased over the course of the experiment, exceeding their initial concentrations by factors of 930, 430, 60, 25, 10, and 6, respectively. The highest concentrations of Fe, Pb, Zn, Mn, Cr, Cu, and Ni within the plants were 59500, 1120, 964, 388, 265, 235, and 47.4 mg/kg dry wt., respectively, for plants growing in mine drainage after 11 months of the experiment. These results indicate that E. acicularis is a hyperaccumulator of Pb. We also found high Si concentrations in E. acicularis (2.08%). It is likely that heavy metals exist in opal‐A within cells of the plant. The bioconcentration factors (BCF: ratio of metal concentration in the plant shoots to that in the soil) obtained for Cr, Cu, Zn, Ni, Mn, and Pb were 3.27, 1.65, 1.29, 1.26, 1.11, and 0.82, respectively. The existence of heavy metals as sulphides is thought to have restricted the metal‐uptake efficiency of E. acicularis at the mine site. The results of this study indicate that E. acicularis shows great potential in the phytoremediation of mine tailing and drainage rich in heavy metals.  相似文献   

Decadal-scale variation in COD and DIN dynamics during the summer in the inner area of the Ariake Sea,Japan     

Yuichi Hayami  Naoki Fujii 《Journal of Oceanography》2018,74(6):551-563

More than 30 years of chemical oxygen demand (COD) and dissolved inorganic nitrogen (DIN) data for the inner area of the Ariake Sea were analyzed with a box model to show the changes in the average seasonal budget and the decadal-scale variation during the summer. The COD peaked in August and March on average. This summertime peak can be explained by an enhanced riverine load and increased primary production. The peak in March suggested additional organic matter production. There were also two peaks in DIN concentration on average: a summertime peak that could be explained by an enhanced riverine load, and a peak in December that was more complicated to explain. From the 1970s to the early 1990s, the bottom water in this area became increasingly hypoxic due to increased COD during the summer, even though there were minimal increases in terrestrial COD and nutrient loads and there were tidal flats covering a widespread area during this period. The increase in COD was caused by increased net ecosystem production, which was due to enhanced primary production induced by an increased freshwater residence time and decreased bivalve grazing. There was a negative feedback control in which hypoxia progressively increased, leading to declines in bivalve biomass, which in turn decreased the grazing pressure limiting primary production, meaning that primary production increased and the area became even more hypoxic. The net DIN production decreased during the 1980s and the 1990s. This was consistent with the change in net ecosystem production according to the COD.  相似文献   

Seasonal and interannual variability of oceanic carbon cycling in the western and central tropical-subtropical pacific: A physical-biogeochemical modeling study     

Masahiko Fujii  Fei Chai  Lei Shi  Hisayuki Y. Inoue  Masao Ishii 《Journal of Oceanography》2009,65(5):689-701

The oceanic carbon cycle in the tropical-subtropical Pacific is strongly affected by various physical processes with different temporal and spatial scales, yet the mechanisms that regulate air-sea CO₂ flux are not fully understood due to the paucity of both measurement and modeling. Using a 3-D physical-biogeochemical model, we simulate the partial pressure of CO₂ in surface water (pCO_2sea) and air-sea CO₂ flux in the tropical and subtropical regions from 1990 to 2004. The model reproduces well the observed spatial differences in physical and biogeochemical processes, such as: (1) relatively higher sea surface temperature (SST), and lower dissolved inorganic carbon (DIC) and pCO_2sea in the western than in the central tropical-subtropical Pacific, and (2) predominantly seasonal and interannual variations in the subtropical and tropical Pacific, respectively. Our model results suggest a non-negligible contribution of the wind variability to that of the air-sea CO₂ flux in the central tropical Pacific, but the modeled contribution of 7% is much less than that from a previous modeling study (30%; McKinley et al., 2004). While DIC increases in the entire region SST increases in the subtropical and western tropical Pacific but decreases in the central tropical Pacific from 1990 to 2004. As a result, the interannual pCO_2sea variability is different in different regions. The pCO_2sea temporal variation is found to be primarily controlled by SST and DIC, although the role of salinity and total alkalinity, both of which also control pCO_2sea, need to be elucidated by long-term observations and eddy-permitting models for better estimation of the interannual variability of air-sea CO₂ flux.  相似文献   

Development of a GPGPU-parallelized hybrid finite-discrete element method for modeling rock fracture     

Daisuke Fukuda  Mojtaba Mohammadnejad  Hongyuan Liu  Sevda Dehkhoda  Andrew Chan  Sang-Ho Cho  Gyeong-Jo Min  Haoyu Han  Jun-ichi Kodama  Yoshiaki Fujii 《国际地质力学数值与分析法杂志》2019,43(10):1797-1824

The hybrid finite-discrete element method (FDEM) is widely used for engineering applications, which, however, is computationally expensive and needs further development, especially when rock fracture process is modeled. This study aims to further develop a sequential hybrid FDEM code formerly proposed by the authors and parallelize it using compute unified device architecture (CUDA) C/C++ on the basis of a general-purpose graphics processing unit (GPGPU) for rock engineering applications. Because the contact detection algorithm in the sequential code is not suitable for GPGPU parallelization, a different contact detection algorithm is implemented in the GPGPU-parallelized hybrid FDEM. Moreover, a number of new features are implemented in the hybrid FDEM code, including the local damping technique for efficient geostatic stress analysis, contact damping, contact friction, and the absorbing boundary. Then, a number of simulations with both quasi-static and dynamic loading conditions are conducted using the GPGPU-parallelized hybrid FDEM, and the obtained results are compared both quantitatively and qualitatively with those from either theoretical analysis or the literature to calibrate the implementations. Finally, the speed-up performance of the hybrid FDEM is discussed in terms of its performance on various GPGPU accelerators and a comparison with the sequential code, which reveals that the GPGPU-parallelized hybrid FDEM can run more than 128 times faster than the sequential code if it is run on appropriate GPGPU accelerators, such as the Quadro GP100. It is concluded that the GPGPU-parallelized hybrid FDEM developed in this study is a valuable and powerful numerical tool for rock engineering applications.  相似文献   

Effect of divalent cations on the kinetics of Fe(III) complexation by organic ligands in natural waters     

Manabu Fujii  Andrew L. Rose  Tatsuo Omura 《Geochimica et cosmochimica acta》2008,72(5):1335-1349

We have investigated the kinetics of Fe(III) complexation by several organic ligands including fulvic acid, citrate and ethylenediaminetetraacetic acid (EDTA). Particular attention was given to examination of the effect of competitive divalent cations (Me: Ca²⁺ and Mg²⁺) at concentrations typical of seawater on the complexation rate. All experiments were conducted in 0.5 M NaCl solution buffered with 2 mM bicarbonate at pH 8.0 in the absence and presence of Me (25 μM-250 mM). The rate constants of complex formation determined by using the competitive ligand (5-sulfosalicylic acid) method combined with visible spectrophotometry ranged from 3.3 × 10⁴ to 3.2 × 10⁶ M⁻¹ s⁻¹. The mechanism of complexation was then examined based on a kinetic model. When EDTA was used as a ligand, Me at concentrations comparable to the ligand markedly retarded the rate of iron complex formation due to the predominance of an adjunctive pathway (where iron-ligand complex is formed via direct association of iron to Me-ligand complex). In contrast, the competing effect of Me on iron complexation by citrate and fulvic acid was observed only when the Me concentration was in excess of the ligand by more than a factor of 10-1000. The kinetic model suggests that iron complexation by fulvic acid occurs predominantly via a disjunctive pathway (where iron complexation by ligand occurs after dissociation of Me from Me-ligand complex) at concentrations of divalent cations and natural organic matter typical of natural waters including seawater and freshwater.  相似文献   

Seasonal changes in the mesozooplankton biomass and community structure in subarctic and subtropical time-series stations in the western North Pacific     

Minoru Kitamura  Toru Kobari  Makio C. Honda  Kazuhiko Matsumoto  Kosei Sasaoka  Rie Nakamura  Kazuyuki Tanabe 《Journal of Oceanography》2016,72(3):387-402

Seasonal changes in mesozooplankton biomass and their community structures were observed at time-series stations K2 (subarctic) and S1 (subtropical) in the western North Pacific Ocean. At K2, the maximum biomass was observed during the spring when primary productivity was still low. The annual mean biomasses in the euphotic and 200- to 1000-m layers were 1.39 (day) and 2.49 (night) g C m^?2 and 4.00 (day) and 3.63 (night) g C m^?2, respectively. Mesozooplankton vertical distribution was bimodal and mesopelagic peak was observed in a 200- to 300-m layer; it mainly comprised dormant copepods. Copepods predominated in most sampling layers, but euphausiids were dominant at the surface during the night. At S1, the maximum biomass was observed during the spring and the peak timing of biomass followed those of chlorophyll a and primary productivity. The annual mean biomasses in the euphotic and 200- to 1000-m layers were 0.10 (day) and 0.21 (night) g C m^?2 and 0.47 (day) and 0.26 (night) g C m^?2, respectively. Copepods were dominant in most sampling layers, but their mean proportion was lower than that in K2. Mesozooplankton community characteristics at both sites were compared with those at other time-series stations in the North Pacific and with each other. The annual mean primary productivities and sinking POC fluxes were equivalent at both sites; however, mesozooplankton biomasses were higher at K2 than at S1. The difference of biomasses was probably caused by differences of individual carbon losses, population turnover rates, and trophic structures of communities between the two sites.  相似文献