Bacterial diversity and community structure in the East China Sea by 454 sequencing of the 16S rRNA gene   总被引：1，自引：0，他引：1  

董逸  赵苑  张文燕  李艳  周锋  刘诚刚  吴莹  刘素美  张武昌  肖天 《中国海洋湖沼学报》2014,32(3):527-541

The 454 sequencing method was used to detect bacterial diversity and community structure in the East China Sea. Overall, 149 067 optimized reads with an average length of 454 nucleotides were obtained from 17 seawater samples and five sediment samples sourced in May 2011. A total of 22 phyla, 34 classes, 74 orders, 146 families, and 333 genera were identified in this study. Some of them were detected for the first time from the East China Sea. The estimated richness and diversity indices were both higher in the sediment samples compared with in the seawater samples. All the samples were divided by their diversity indices into four regions. Similarity analysis showed that the seawater samples could be classified into six groups. The groups differed from each other and had unique community structure characteristics. It was found that different water masses in the sampling areas may have had some influence on the bacterial community structure. A canonical correspondence analysis revealed that seawater samples in different areas and at different depths were affected by different environmental parameters. This study will lay the foundation for future research on microbiology in the East China Sea.  相似文献   

Molecular cloning and characterization of a threonine/serine protein kinase lvakt from Litopenaeus vannamei     

阮灵伟  刘荣雕  徐洵  施泓 《中国海洋湖沼学报》2014,32(4):792-798

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Effects of grazing exclusion on plant productivity and soil carbon,nitrogen storage in alpine meadows in northern Tibet,China   总被引：4，自引：1，他引：3  

Dingpeng Xiong  Peili Shi  Yinliang Sun  Jianshuang Wu  Xianzhou Zhang 《中国地理科学(英文版)》2014,24(4):488-498

Grazing exclusion is widely adopted in restoring degraded alpine grasslands on the Qinghai-Tibetan Plateau. However, its effectiveness remains poorly understood. In this study, we investigated the effects of grazing exclusion on plant productivity, species diversity and soil organic carbon （SOC） and soil total nitrogen （STN） storage along a transect spanning from east to west of alpine meadows in northern Tibet, China. After six years of grazing exclusion, plant cover, aboveground biomass （AGB）, belowground biomass （BGB）, SOC and STN were increased, but species diversity indices declined. The enhancement of AGB and SOC caused by grazing exclusion was correlated positively with mean annual precipitation （MAP）. Grazing exclusion led to remarkable biomass increase of sedge species, especially Kobresia pygmaea, whereas decrease of biomass in forbs and no obvious change in grass, leguminous and noxious species. Root biomass was concentrated in the near surface layer （10 cm） after grazing exclusion. The effects of grazing exclusion on SOC storage were confined to shallow soil layer in sites with lower MAP. It is indicated that grazing exclusion is an effective measure to increase forage production and enhance soil carbon sequestration in the studied region. The effect is more efficient in sites with higher precipitation. However, the results revealed a tradeoff between vegetation restoration and ecological biodiversity. Therefore, carbon pools recover more quickly than plant biodiversity in the alpine meadows. We suggest that grazing exclusion should be combined with other measures to reconcile grassland restoration and biodiversitv conservation.  相似文献   

白令海和楚科奇海表层沉积物中多环芳烃降解微生物多样性   总被引：4，自引：0，他引：4  

张荣秋  董纯明  盛华芳  白秀花  矫立萍  刘金禄  汪卫国  周宏伟  邵宗泽 《海洋学报》2014,36(4):52-61

为了研究白令海(海盆及陆架)至楚科奇海陆架表层沉积物中多环芳烃(PAHs)降解菌的多样性,并获得新的PAHs降解菌资源。在GC-MS分析沉积物中PAHs种类和含量的基础上,以萘、菲和芘的混合物为唯一碳源和能源对表层沉积物样品进行富集,通过平板分离鉴定可培养菌株,并验证其降解能力;同时利用变性梯度凝胶电泳(DGGE)和Illumina高通量测序技术分析降解菌群结构。GC-MS测定结果表明,14个表层沉积物中PAHs总干质量介于32.99~276.97ng/g。富集菌群中共分离获得51株可培养细菌,平板纯培养、PCR-DGGE及Illumina测序结果均表明,菌群中优势的降解菌是γ-proteobacteria的Marinobacter,Pseudoalteromonas,Pseudomonas和Actinobacteria门的Dietzia菌。此外,Illumina测序结果还表明14个降解菌群在菌群结构组成上,可分为海盆区和陆架区两种类群;同时检测到一些低丰度的海洋专属PAHs降解菌,如Cycloclasticus,Alteromonas和Neptunomonas等。本文结果将加深对白令海及楚科奇海表层沉积物中PAHs降解菌资源与生物多样性的认识。  相似文献   

“鲆优1号”牙鲆和亲本群体的表型及遗传性状变异分析   总被引：3，自引：1，他引：2  

田永胜  齐文山  姜静  王磊  张英平  刘万军  陈红林  陈松林 《海洋学报》2014,36(6):75-86

牙鲆是我国及大西洋沿岸天然捕捞和养殖的主导品种,对其遗传资源保护及养殖新品种开发具有重要的意义。本文对人工培育的牙鲆养殖新品种"鲆优1号"(ZJ)、其父本韩国牙鲆群体(KS)、母本F0750家系(JX)的18个表型性状进行测量,利用SSPS程序进行方差分析和多重比较,发现体长/体宽,头长/眼径,头长/眼间距、眼径/眼间距,侧线鳞和尾鳍条6个性状与父本或母本具有显著性差异(p0.05),可做为鉴别"鲆优1号"的标志性表型性状。"鲆优1号"与母本无显著差异(p0.05)性状占50%。与父本无显著性差异(p0.05)性状占33.33%。筛选了24个多态性微卫星引物对KS、JX、ZJ和FJ的遗传多样性进行分析,总共扩增出143个等位基因。4个群体的平均等位基因数(Na)大于平均有效等位基因数(Nae),平均观测杂合度大于平均期望杂合度,多态信息含量(PICa)分析显示:KSJXFJZJ,说明人工选育导致了遗传杂合度的降低。24个微卫星位点在4个牙鲆群体中的遗传偏离指数(D)在-0.759 7到0.188 4之间,在KS、JX、ZJ和FJ群体中分别有10、16、11和17个位点显著(p0.05)或极显著(p0.01)偏离Hardy-Weinberg平衡。24个基因位点的遗传分化系数(Fst)在0.076 7~0.258 6之间,平均为0.146 8,表明14.68%的变异来自种群间,85.32%的变异来自种群内。Neis遗传距离显著,KS和FJ遗传距离最近(0.282 5),遗传相似系数最大(0.753 9);ZJ与JX遗传距离最大(0.420 5),遗传相似系数最小(0.656 7)。本文研究表明:"鲆优1号"具有明显的表型和遗传特征,与父母本及反交群体比较发生了一定程度的种内和种群间遗传分化,为"鲆优1号"的种质鉴别提供了理论依据。  相似文献   

Biodiversity and community structural characteristics of macrobenthos in the Chukchi Sea   总被引：1，自引：1，他引：0  

WANG Jianjun  LIN Heshan  HE Xuebao  LIN Junhui  HUANG Yaqin  LI Rongguan  ZHENG Chengxing  ZHENG Fengwu  JIANG Jinxiang 《海洋学报(英文版)》2014,33(6):82-89

Field sampling of the macrobenthos from 23 stations in the Chukchi Sea was conducted during the 4th CHINARE(Chinese National Arctic Research Expeditions, July–August, 2010). We identified a total of 140 species of macrozoobenthos belonging to nine phyla, which were dominated by polychaetes(66), crustaceans(30), and mollusks(25), followed by echinoderms(9) and others(ten others, including four cnidarians, one oligochaete, one sipuncula, one priapulida, two bryozoans, and one urochordata). The dominant species were Aphelochaeta pacifica, Heteromastus filiformis, Nephtys ciliata, Nephtys caeca, Scoletoma fragilis, Golfingia margaritacea, Nuculana pernula, Macoma calcarea, Ennucula tenuis, Macoma inquinata, Musculus discors, Echinarachnius parma, and Ophiura sarsii, so there were more cold-eurythermal boreal immigrants than truly Arctic species(endemics). The average density and biomass(mean ± SD across all stations) of the total macrozoobenthos were(916 ± 907) ind/m2 and(902.9 ± 1 227.7) g/m2(wet weight), respectively. Relatively high density and biomass were observed in the samples from the northeastern and southern Chukchi Sea. The spatial variation of benthic communities in the study sea area was relatively large; this spatial heterogeneity has led to high diversity and a patchy distribution pattern in the community structure. Compared to the 1st CHINARE( July–August, 1999), this investigation revealed different degrees of decreases in the average taxa numbers and the average density, abundance, and biodiversity in the area over the recent decade, which might be associated with global warming, human activities, and sea ice variations.  相似文献   

Seasonal and spatial variation in species diversity, abundance, and element accumulation capacities of macroalgae in mangrove forests of Zhanjiang, China     

ZHANG Yubin  LI Yuan  SHI Fei  SUN Xingli  LIN Guanghui 《海洋学报(英文版)》2014,33(8):73-82

The objective of this study was to investigate whether there was distinctive seasonal and zonal variation in the species diversity, biomass, and element accumulation capacities of macroalgae in two major intertidal mangrove stand types （Avicennia marina assemblage andSonneratia apetala assemblage） in the Zhanjiang region of southern China. Over a year, 31 species in 15 genera were identified in both mangrove assem-blages, of which the dominant species wereCladophoropsis zollingeriand Enteromorpha clathrat.Macroal-gal species were significantly most abundant in spring （p〈0.05）, followed by summer, winter, and autumn. Variation in the zonal distribution of macroalgal species was conspicuous in both intertidal mangrove as-semblages, with the greatest abundance in the middle zone, and the least in the front zone. Patterns in the seasonal and zonal variation in macroalgal biomass in theS. apetalaassemblage were similar to those of macroalgal species diversity in both mangrove assemblages. The seasonal patterns in tissue concentrations of 15 analyzed elements were not uniform among the macroalgaeC. zollingeri,E. clathrata, andGracilaria salicornia in theA. marina assemblage. All three species exhibited variation in their responses to ambient concentrations of different elements, implying their differential ability to absorb and selectively accumulate certain elements.  相似文献   

Biodiversity and seasonal variation of benthic macrofauna in Minicoy Island, Lakshadweep, India     

Dalia Susan V  Satheesh Kumar P.  Pillai N. G. K 《海洋学报(英文版)》2014,33(10):58-73

From the Indian coast only limited data are available on the benthic fauna of the seagrass communities. In this study, seasonal variation in the distribution of macrobenthos and influence of environmental parameters was explored at four seagrass beds and two mangrove stations along the Minicoy Island, Lakshadweep, India, from September 1999 to August 2001. A total of 160 macrobenthic species from eight major groups represented the macrofauna of the Minicoy Island. Of the identified taxa, molluscs 70（gastropods 41.46%, bivalves 7.5%）, polychaetes 27（16.88%）, crustaceans 30（18.75%）, echinoderms 11（6.88%） and remaining others. Average seasonal abundance of benthic macrofauna ranged from 219 to 711 ind./m2, species diversity varied from 1.45 to 3.64 bits per individual, species richness index ranged from 4.01 to 26.17, evenness 0.69 to 1.66. In general, the higher abundance and species diversity was noticed in southern seagrass stations and northern seagrass stations, but in the mangrove stations comparatively low species diversity was observed. Three-way analysis of variance indicated that all communities resulted as being significantly different between seagrass and mangrove station, mainly when the seasonal interaction was considered. Multivariate analyses were employed to help define benthic characteristic and the relationship between environmental parameters at the six monitoring stations. Results of cluster analyses and multidimensional scale plot suggest that for mangrove region, different physiographic provinces, lower salinity, dissolved oxygen and sediment biotic structure have a higher influence on the species composition and diversity than other oceanographic conditions.  相似文献   

南海西沙海槽沉积物柱MD05-2902细菌多样性     

李涛  王鹏 《海洋学报(英文版)》2014,33(10):85-93

A sediment core MD05-2902 was collected from the deep-sea basin of the Xisha Trough. The vertical distribution and diversity of bacteria in the core was investigated through ten sub-sampling with an interval of 1 m using bacterial 16 S rRNA gene as a phylogenetic bio-marker. Eighteen phylogenetic groups were identified from 16 S rRNA gene clone libraries. The dominant bacterial groups were JS1, Planctomycetes and Chloroflexi, which accounted for 30.6%, 16.6%, and 15.6% of bacterial clones in the libraries, respectively. In order to reveal the relationship between biotic and abiotic data, a nonmetric multidimensional scaling analysis was performed. The result revealed that the δ15N, δ13C, total organic carbon and total organic nitrogen possibly influenced the bacterial community structure. This study expanded our knowledge of the biogeochemical cycling in the Xisha Trough sediment.  相似文献   

刺激隐核虫ADP/ATP 载体蛋白基因的克隆和分子特征分析     

刘程  倪炜  郭果为  原丽平  陈金铃  徐阳  叶忠锋  王正朝  黄晓红 《海洋科学》2014,38(1):44-51

刺激隐核虫(Cryptocaryon irritans)是严重危害海水鱼类的寄生纤毛虫,为了对其进行分子水平的研究,采用SMART技术构建了刺激隐核虫滋养体期的cDNA文库,并随机挑取克隆做EST测序,获得大量克隆的基因。从中挑选ATP/ADP载体蛋白基因同源物(CiAAC)的克隆进一步测序获得全长的cDNA序列。该序列全长为1029bp,包含编码287个氨基酸的开放阅读框。用RT-PCR分析了其在刺激隐核虫各时期的表达情况,并应用生物信息学分析方法,对CiAAC基因进行不同物种的系统进化树分析、功能区分析、物理性质分析、疏水性分析、跨膜结构域预测、亚细胞定位、二级结构预测等等。结果表明:CiAAC蛋白在刺激隐核虫各时期均有表达;据预测,它为六次跨膜蛋白,与卵形肠虫(Nyctotherus ovalis)的ADP/ATP载体蛋白的同源性最高,相似性达65%;蛋白为疏水性,并定位于刺激隐核虫的细胞质中。随后实验中通过对基因的定点诱变,将纤毛虫的非通用密码进行改造后,构建了pGEX-4T-1/CiAAC表达载体。以上实验为病原生物刺激隐核虫CiAAC载体蛋白的研究及应用提供了基础资料。  相似文献