基于线粒体D-loop 基因探讨花鳗鲡的群体遗传多样性及其种群进化历史     

丁旭  齐鑫  尹绍武 《海洋科学》2012,36(5):117-123

通过测定花鳗鲡(Anguillia marmorata)海南群体(HN)和菲律宾群体(PH)共19尾个体的线粒体D-loop基因的核苷酸序列(约1017 bp),分析了花鳗鲡的种群遗传结构。结果表明:A、T、G、C 4种核苷酸的平均含量分别为39.8%、28.3%、12.4%、19.4%,A+T含量(68.1%)明显高于G+C含量(31.8%)。所测序列中存在73个变异位点,共有18个单倍型。其中海南群体的单倍型多样度(Hd)、核苷酸多态性(Pi)、平均核苷酸差异数(k)分别为0.982、0.21577和219.655,而菲律宾群体的单倍型多样度、核苷酸多态性、平均核苷酸差异数分别为1.000、0.26728和271.821,两个群体之间平均遗传距离(P)为0.3203。结果表明2个群体遗传变异较大,菲律宾群体的遗传多样性较海南群体更加丰富。通过构建NJ分子系统树表明2个群体的亲缘关系较近。利用中性检验Tajima’s D(海南群体D=1.35345,P>0.01;菲律宾群体D=0.79220,P>0.01)和Fs(海南群体Fs=3.759;菲律宾群体Fs=2.231)探讨其种群历史,表明花鳗鲡群体进化过程种群数量较为稳定。  相似文献   

Isolation and characterization of polymorphic microsatellite loci in large yellow croaker, Larimichthys crocea     

YE Hu  REN Peng  ZHAO Guangtai  YUE Genhu  WANG Zhiyong 《海洋学报(英文版)》2012,31(4):149-153

An (AC)n-microsatellite-enriched library for Larimichthys crocea was constructed in this study. Primers for fifty simple sequence repeat (SSR) loci were synthesized and genotyped on 30 L. crocea individuals from Guanjingyang wild population (WP) in Fujian Province and 38 individuals from Ningbo cultured population (CP) in Zhejiang Province. Only 21 loci were successfully amplified and polymorphic in two populations. In WP, the observed heterozygosity (H_O ) ranged from 0.233 to 0.900 and the expected heterozygosity (H_E ) ranged from 0.326 to 0.893, with an average of 7.8 alleles/locus, the polymorphism information content (PIC) ranged from 0.283 to 0.866 (mean 0.731). In CP, the H O ranged from 0.189 to 0.892 and the H E ranged from 0.333 to 0.800, with an average of 4.4 alleles/locus. The probability test showed significant departures from HWE in 9 and 2 of the 21 loci in WP and in CP, respectively. Deficiency of heterozygotes at four loci showed the presence of null alleles (P <0.01). The PIC of 20 microsatellite loci in WP were greater than 0.50. Overall, these novel markers are potentially useful for the study of population genetics, construction of genetic linkage and quantitative trait loci maps in large yellow croaker.  相似文献   

Cloning, expression and characterization of serine palmitoyltransferase (SPT)-like gene subunit (LCB2) from marine Emiliania huxleyi virus (Coccolithovirus)   总被引：1，自引：0，他引：1  

LIU Xuhong  ZHENG Tianling  CAI Yiqin  LIU Jingwen 《海洋学报(英文版)》2012,31(6):127-138

The authors have isolated and characterized a novel serine palmitoyltransferase(SPT)-like gene in marine Emiliania huxleyi virus(EhV-99B1).The open-reading frame(ORF) of EhV99B1-SPT encoded a protein of 496 amino acids with a calculated molecular mass of 96 kDa and Ip 6.01.The results of sequence analysis showed that there was about 31%-45% identity in amino acid sequence with other organisms.The maximum likelihood phylogenetic tree suggested that the EhV99B1-SPT gene possibly horizontally transferred from the eukaryote.Hydrophobic profiles of deduced amino acid sequences suggested a hydrophobic,globular and membrane-associated protein with five transmembrane domains(TMDs) motifs.Several potential N-linked glycosylation sites were presented in SPT.These results suggested that EhV99B1-SPT was an integral endoplasmic reticulum membrane protein.Despite lower sequence identity,the secondary and three-dimensional structures predicted showed that the "pocket" structure element composed of 2α-helices and 4βsheets was the catalytic center of this enzyme,with a typical conserved "TFTKSFG" active site in the N-terminal region and was very close to those of prokaryotic organisms.However,the N-terminal domain of EhV99B1-SPT most closely resembled the LCB2 catalysis subunit and the C-terminal domain most closely resembled the LCB1 regulatory subunit of other organisms which together formed a spherical molecule.This "chimera" was highly similar to the prokaryotic homologous SPT.For a functional identification,the EhV99B1-LCB2 subunit gene was expressed in Escherichia coli,which resulted in significant accumulation of new sphingolipid in E.coli cells.  相似文献   

近江牡蛎i-型溶菌酶基因分析及温度对基因表达的影响   总被引：2，自引：0，他引：2  

许友卿  吴卫君  丁兆坤  潘志忠  何为  吴铁军  陈秀荔  李咏梅  蒋伟明 《热带海洋学报》2012,(6):69-75

溶菌酶是机体先天免疫系统中一个重要的效应分子,参与机体多种免疫反应。本研究克隆了近江牡蛎Crassostrea hongkongensis i-型溶菌酶的保守cDNA序列,并探讨其在不同组织的表达、不同温度对其表达的影响。结果表明,近江牡蛎i-型溶菌酶保守cDNA序列长634 bp,包含一个长420 bp开放阅读框,编码139个氨基酸;其蛋白序列具有典型的i-型溶菌酶特征,包含特定氨基酸残基序列CL(E/L/R/H)C(I/M)C、部分高度保守序列SCG(P/Y)FQI和酶活性中心位点(Glu34、Asp45、Ser48、Trp61);另外,还发现一个新的氨基酸保守序列HNGGPRGC。i-型溶菌酶基因在近江牡蛎消化腺、肌肉、鳃、外套膜、唇瓣等5种组织的表达量以消化腺最高,鳃次之,肌肉最低。i-型溶菌酶基因的表达与温度相关,水温20—25℃,其表达量比较稳定;水温6℃或13℃,表达量都呈下降趋势;在27℃,表达量在整个实验过程都维持一个相对高的水平;在34℃,其表达量在第12小时达到最高,第48小时后急剧下降;表明温度可影响i-型溶菌酶基因表达,从而调节其免疫功能和对外环境的应激反应。  相似文献   

急性高温低氧胁迫下刺参体腔液细胞miRNA表达谱的构建和靶标基因的功能分析     

尹英超  刘富祥  张玉钦  陈慕雁 《中国海洋大学学报(自然科学版)》2022,(4):30-42

为了探究刺参应对极端高温、低氧环境的内在分子调控机制,促进刺参养殖产业的可持续发展.本研究以刺参体腔液细胞作为研究对象,分别构建了高温、低氧下miRNA的差异表达谱并分析了差异表达miRNAs的靶基因功能.研究表明:高温组中共发掘了20个差异表达miRNA,其中11个上调,9个下调;低氧组中共发掘了10个差异表达miR...  相似文献   

A Preliminary Genetic Investigation of Rastrelliger Kanagurta Based on Random Amplified Polymorphic DNA and Mitochondrial ND2 Gene     

Siti Azizah Mohd Nor  Abu Talib A  Mohd Ghows M A  Samsudin B 《湿地科学》2008,6(4)

In a preliminary investigation, Random Amplified Polymorphie DNA (RAPD) analysis and partial mitochon-drial ND2 gene sequencing were conducted to study the genetic variation of the Indian mackerel, Rastrelliger kanagurta along a 450 km stretch of its distribution on the west coast of Peninsular Malaysia. A total of 53 individuals from 6 popu-lations were analyzed using 4 RAPD primers and a sub-sample of 15 individuals was chosen for sequencing of partial ND2 gene. Comparison between the 2 markers revealed genetic structuring in the RAPD results but genetic homogeneity for ND2 gene. Based on the former there may be at least 2 genetically differentiated groups of Rastrelliger kanagurta a-long this stretch.  相似文献   

盐碱地有望变身良田沃土     

《地理教学》2010,(14):62-62

盐碱地基本上都是不毛之地,这是小学课本里就有的常识。但华东师范大学夏涛教授的课题组,最近通过基因改组技术创造出一种新的基因,凡是转入并表达这种新基因的植物,都能够在高盐环境里正常生长。该项成果目前已经申请了中国国家发明专利和国际PCT专利。  相似文献   

传统聚落景观基因信息单元表达机制   总被引：2，自引：0，他引：2  

胡最  刘沛林  申秀英  邓运员  李伯华 《地理与地理信息科学》2010,26(6)

传统聚落景观基因信息单元的表达机制主要包含了逻辑表达机制、数据模型表达机制和自动提取机制.结合聚落景观基因的相关理论和构建景观基因信息图谱的研究实践,探讨了传统聚落景观基因信息单元的表达机制,并以湘西凤凰古城和江永女书为例,进行了表达机制的实验.研究结果表明,表达机制对于构建景观基因图谱不仅具有重要科学意义,而且能极大地提高传统聚落景观信息管理的水平.  相似文献   

Sequences and Phylogeny Analysis of rbcL Gene in Marine Chlorophyta     

SHEN Songdong  LI Yanyan  WU Xunjian  DING Lanping 《青岛海洋大学学报(英文版)》2010,(2):145-150

  相似文献   

Molecular Cloning and Expression ofPoIR2, a Novel Gene Involved in Immune Response in Japanese Flounder （Paralichthys olivaceus）     

Shuo Li  Chunmei Li  Xubo Wang  Yanan Wang  Zhipeng Liu  Teng Zhai  Quanqi Zhang 《中国海洋大学学报(英文版)》2010,9(1):59-64

A novel immune-related gene was expressed in Japanese flounder (Paralichthys olivaceus) injected with Vibrio anguillarum. The complete cDNA contained a 169 bp 5’UTR, a 336 bp open reading frame (ORF) encoding 111 amino acids and a 556bp 3’UTR. Six exons and five introns were identified in the PoIR2 gene. Blastp similarity comparison showed its encoding protein had 50% similarity to Danio rerio neuromedin S (NMS), but further alignment indicated they did not have NMS C-terminal conservational signature domain. So it was not defined as an NMS homologue. Protein structure analysis indicated it had a 26aa signal peptide and was a secretory pathway protein. RT-PCR demonstrated that the expression of PoIR2 was quickly induced and drastically increased in liver, kidney, spleen, gills, intestine, heart, and skeletal muscle after infected with V. anguillarum. These results indicated that the PoIR2 might play some important role in Japanese flounder immune response system. This gene was named PoIR2 (P.olivaceus immune-related gene 2, GenBank accession number: EU224372). The mature PoIR2 peptide was expressed in BL21(DE3) pLysS using pET-32a(+) vector and a great part of the recombinant mature peptide existed as soluble type.  相似文献