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11.
ABSTRACT Determining the genetic structure and population dynamics of harvested species are key aspects of effective fisheries management. New Zealand scampi (Metanephrops challengeri) is a species of nethropid lobster that supports a commercial fishery on the continental shelf and slope around New Zealand. To determine the genetic structure and historical population demography of New Zealand scampi, we sequenced a 623 base-pair fragment of the mitochondrial gene cytochrome c oxidase subunit one (CO1) from 321 individuals across six widely separated sites off the coast of mainland New Zealand and the subantarctic Auckland Islands, representing much of the species’ distribution. The Auckland Islands population was found to be genetically distinct from all other sampled populations, potentially resulting from an absence of continuous suitable habitat between the central-eastern South Island and the Auckland Islands. An isolation-by-distance pattern of genetic structure was also detected. With the exception of the Mercury Islands, all sampled populations showed signs of recent population expansion, potentially linked to changes in habitat availability during the glacial-interglacial cycles of the Pleistocene. We recommend that the current NZ scampi management areas and harvesting rates for each remain unchanged. 相似文献
12.
Intraspecific diversity of molluscan species is usually studied based on maternally inherited mitochondrial DNA,from which only part of the evolutionary history can be reflected.Some nuclear ribosomal RNA genes such as 28S rRNA represent poten-tial candidates that can be easily applied in phylogeography because of lacking intraindividual variation.However,considering their low polymorphism,genetic appraisals on whether and how they can be used in population studies are necessary.Here,we applied a short 28S rRNA to assess genetic patterns of the clam Cyclina sinensis along the coast of China and compared the results with a for-mer study based on COI and ITS-1 analyses.The results revealed the 28S rRNA data set was characterized by an extremely low level of variation,with only seven haplotypes defined for 93 individuals.Haplotype and nucleotide diversity for each population was al-most the lowest when compared with the other two markers.However,the distribution of two dominant haplotypes showed clear geo-graphic patterns,and significant population differentiation was revealed between the East China Sea and the South China Sea.These patterns were highly concordant with findings of the former study that populations of C.sinensis were historically separated by land bridges among sea basins.Our study suggested that although the nuclear rRNAs have shortcomings such as low variation,they have advantages including lack of intraindividual variation and high amplification rates.Applying rRNA genes can enrich the toolbox of nuclear markers in molluscan phylogeographic studies. 相似文献
13.
Y Qhaji B Jansen van Vuuren I Papadopoulos CD McQuaid 《African Journal of Marine Science》2015,37(3):345-351
The Wild Coast in south-eastern South Africa is strongly influenced by the warm, southward-flowing Agulhas Current. This current has a significant impact on dispersal in the coastal biota of the region, and facilitates high levels of connectivity among populations. However, it is not known how the region's high-velocity hydrology affects genetic population structure in endemic estuarine species, populations of which are frequently isolated from the sea. Here, we compared genetic structure in two estuarine crabs of the family Hymenosomatidae. Both are presumed to have low dispersal potential, but they differ in terms of their life histories. Hymenosoma longicrure has abbreviated larval development and can complete its entire life cycle within estuaries, whereas Neorhynchoplax bovis is a direct developer that lacks planktonic larvae. Using DNA sequence data from the mitochondrial COI gene and the intron of the nuclear ANT gene, we found that levels of genetic structure differ considerably between the species. Depending on the genetic marker used, H. longicrure is genetically homogeneous (COI) or displays low levels of genetic structure and minor evidence of recruitment near natal sites (ANT). In contrast, connectivity in N. bovis is much lower, as this species has a unique combination of alleles at each site, indicating that recruitment is mostly local. These results support previous findings suggesting that even a short larval dispersal phase is sufficient to maintain high levels of connectivity and prevent genetic divergence among populations. 相似文献
14.
Mitochondrial DNA variation reveals distinct lineages in Penaeus semisulcatus (Decapoda,Penaeidae) from the Indo‐West Pacific Ocean 
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下载免费PDF全文 Penaeus semisulcatus, the green tiger prawn, is an ecologically and economically important penaeid shrimp in the Indo‐West Pacific region, especially in rice‐shrimp farming and capture fisheries in Bangladesh and Sri Lanka, respectively. Genetic variation and phylogeography of samples of this species from Bangladesh and Sri Lanka were studied utilizing different mitochondrial DNA markers, i.e. cytochrome oxidase subunit 1 (CO1), control region (CR) and 16S rRNA genes. No evidence of population structure was observed in Bangladesh, but distinct variations were found among the Sri Lankan samples (ΦST = 0.04, p = .002; FST = 0.07, p = .001), with the western sample differing from the northwestern and southern samples. The Bangladesh population had lower genetic diversity than two of the three Sri Lanka populations. The phylogeography of P. semisulcatus revealed two distinct mitochondrial DNA (mtDNA) lineages, one in the Western Pacific Ocean and second in the Indian Ocean. The Bangladesh samples showed highest levels of similarity with samples from Sri Lanka, India and Malaysia, with the Bangladesh and Sri Lanka populations sharing the most common recent ancestry. Among the Indian Ocean samples, high levels of variation were observed in the samples from Iran, indicating admixture of two distinct mtDNA lineages, one shared by the populations from the Bay of Bengal and the other possibly originating from Eastern Africa. The genetic and phylogeographic information obtained in this study will be useful in appropriate planning for management and conservation of shrimp fisheries in Bangladesh and Sri Lanka, and in the Indo‐West Pacific region. 相似文献
15.
Phylogeography of the bluespotted cornetfish,Fistularia commersonii: a predictor of bioinvasion success? 下载免费PDF全文
下载免费PDF全文 Alexis M. Jackson Kimberly Tenggardjaja Gerardo Perez Ernesto Azzurro Daniel Golani Giacomo Bernardi 《Marine Ecology》2015,36(4):887-896
Biological invasions result in huge ecological and economic impacts; therefore, a great amount of effort is dedicated to predicting the potential success of newly established or candidate bioinvaders. Thus far, over 90 species of fish have entered the Mediterranean Sea via the Suez canal, the so‐called Lessepsian bioinvaders. The bluespotted cornetfish, Fistularia commersonii, is remarkable in its ability to disperse within the Mediterranean and has been dubbed ‘the Lessepsian sprinter’. In just a few years, starting in 2000, it expanded over the entire area, from the Suez Canal to Gibraltar. Theoretical predictions correlate the dispersal capabilities of an invader in its native range (using the population genetic metrics, Fst, as a proxy) with its dispersal capability in its invading area (continuous extent of spread, CES). Here, we estimated the population genetic characteristics of Indo‐Pacific native populations of F. commersonii in order to determine if this Lessepsian ‘sprinter’ fits the predictive model of dispersal. Indeed, we found that even in the case of such a very rapid range expansion, the predicted relationship between Fst and CES is fulfilled in F. commersonii. 相似文献
16.
6种帘蛤科贝类及4个地理种群文蛤线粒体COI基因片段序列分析 总被引：8，自引：0，他引：8
对文蛤(Meretrix meretrix L.,1758)、青蛤(Cyclina sinensis G.,1791)、硬壳蛤(Mercenaria mercenaria L.,1758)、江户布目蛤(Protothaca jedoensis L.,1874)、薄片镜蛤(Dosinia corrugata R.,1850)和菲律宾蛤仔(Ruditapes philippinarum A.,1850)6种帘蛤科贝类和4个地理种群文蛤(大连、连云港、湛江、防城港)的细胞色素c氧化酶亚基I(COI)基因片段的核苷酸序列进行了分析,以探讨这一序列在种质鉴定、种群遗传结构和分子系统发生研究中的应用价值.测序结果表明,所有物种扩增片段长度均为709 bp,序列A+T含量(62.2%~67.6%)明显高于GC含量.物种间共有变异位点311个,其中简约信息位点202个;文蛤4个地理种群间共有变异位点46个,其中简约信息位点2个.此区段共编码235个氨基酸,种间共有氨基酸变异位点85个;文蛤种群间只有1个氨基酸变异位点.以COI基因片段序列为标记,用大竹蛏(Solen grandis)作外群,构建了帘蛤科贝类的系统发生树,其拓扑结构显示4个地理种群文蛤首先聚为1个单元,然后与青蛤聚在一起,最后所有帘蛤科物种聚为一枝,与外群相区别,其结果与传统形态分类基本一致,说明COI基因适合作为该科贝类种群遗传结构和系统发生研究的分子标记. 相似文献
17.
印度洋-西太平洋海洋动物谱系地理演化格局 总被引：2，自引：1，他引：1
印度洋和西太平洋海域,拥有大量浅海大陆架、边缘海和岛屿,孕育了全球最丰富的初级生产力和渔业资源,尤其是作为该区域陆源物质输入、两大洋能量汇聚中心和生物多样性中心的东印度三角,在全球海洋生物分布和进化中扮演了重要角色。本文结合物理海洋和化学海洋环境,通过线粒体基因和核基因等分子标记研究结果,归纳分析了印度洋和西太平洋区域海洋动物谱系生物地理演化格局及其可能的成因。具体结果如下:(1)雷州半岛-海南岛、冰期暴露的台湾海峡和长江冲淡水等沿岸海区,阻碍了海洋动物在海区间的扩散,南海、东海和黄、渤海广布类群,多由一个星状辐射谱系组成,种群经历最近的数量扩张和区域扩散,而仅分布于南海的物种,一般具有多个深度分歧的遗传谱系,种群呈现出数量平衡状态,同一广布物种的南海和东海种群,因区域海洋环境差异,种群数量动态演化历史不同;(2)黑潮影响区的沿岸广布类群,黑潮海流促进了顺流扩散、限制了跨海流基因交流;(3)东印度三角区,存在"华莱士线"、"赫胥黎线"和"印度洋-太平洋线"等生物地理边界,该区域海洋或咸淡水溯河洄游动物多呈现为分布在生物地理边界两侧的2个遗传谱系;(4)西太平洋,存在与目前东西向大洋环流垂直的南北向跨赤道扩散和基因流现象,可能受到目前南北向随季节反转的沿岸流和深层海流影响;(5)印度洋东西海岸共享物种,受印度洋西向赤道流影响,海洋动物多由东印度洋向西印度洋跨洋扩散;(6)西印度洋广布物种/类群,呈现了两种不同种群分化格局——遗传同质均一种群和深度分化的遗传谱系;(7)东、北印度洋和南海区域共享大量物种,可能是海盆间双向扩散的结果;(8)海洋生物谱系生物地理进化史信息,可以用于地质事件、海洋环流和古气候重建。 相似文献
18.
Reza Sadeghi Hamid Reza Esmaeili Fatah Zarei Bettina Reichenbacher 《Marine Ecology》2021,42(1):e12629
The Persian Gulf and Oman Sea are characterized by an interesting paleoclimatic history and different ecological settings, and offer a unique study area to investigate the genetic structure of marine organisms including fishes. The Ornate goby Istigobius ornatus is widely distributed throughout the tropical Indo‐West Pacific including the Persian Gulf and Oman Sea. Here, we present the population structure, genetic diversity, and demographic history of four populations of I. ornatus from the latter two regions using the D‐loop marker of mitochondrial DNA. The results reveal a shallow genealogy, a star‐like haplotype network, significance of neutrality tests, and unimodal mismatch distribution. This is concordant with a recent demographic expansion of I. ornatus in the Persian Gulf and Oman Sea at about 63,000–14,000 years ago, which appears to be related to Late Pleistocene sea level fall and rise. The results of the pairwise Fst estimates imply high gene flow along the coast of the Persian Gulf, which is probably due to larval dispersion, whereas the Oman Sea population clearly differs from all Persian Gulf populations. The AMOVA result indicates that 7.74% of the variation is related to differences among ecoregions, while inter‐ and intra‐population differences explained ?3.20% and 95.47% of the variation, respectively. The haplotype network depicts two groups of haplotypes, most of them were specific to the Persian Gulf. No further evidence for geographic lineage substructuring was evident. The Mantel test result indicates that isolation by distance is not the main mechanism that promoted the genetic differentiation among the studied populations of I. ornatus. We suggest that cumulative effects of ecological and geographic barriers such as salinity, oceanographic conditions, and the presence of the Strait of Hormuz have shaped the genetic structure of I. ornatus in the Persian Gulf and Oman Sea. 相似文献
19.
Small crustaceans are diverse and abundant in seagrass habitats and provide many ecological services. Further information is needed about their long‐ and short‐term response to habitat fragmentation and loss. Shrimp specimens were sampled from coastal seagrasses: latitudes 9°–27° S (Torres Strait to Moreton Bay, Queensland, Australia) and longitudes 141°–153° E (Weipa to Moreton Bay, Queensland, Australia). The seagrass shrimp Phycomenes zostericola (Caridea: Decapoda) underwent phylogeographic analysis using mitochondrial and nuclear sequence data. Lineage relationships were investigated and two deeply divergent sympatric lineages of P. zostericola were discovered in northern samples. The two lineages display vastly different demographic histories in spite of similar overall phylogeographic patterns. The two lineages appear to be in secondary contact with each other, detailing independent histories of sea level change, long distance colonisation and habitat fragmentation. Their regional structure is evidence that the potential for dispersal is only realised under specific environmental conditions. Nuclear data, used to determine reproductive status between lineages, instead displayed a non‐random latitudinal geographic distribution suggesting directional selection, possibly in response to ocean temperatures. The differences between the two deeply divergent lineages highlight the importance of understanding variability among cryptic taxa and their response to habitat change. 相似文献
20.
河北秦皇岛灵仙洞斑鬣狗化石的古DNA初步分析 总被引：1，自引：0，他引：1
鬣狗科动物曾是一个数量十分可观的群体,在5百万年前曾达到演化的鼎盛时期,留下已鉴定化石种100余种.现生的鬣狗科动物仅有4种,仅分布在亚洲和非洲部分地区.由于该科动物演化至今种类剧减、分布区退缩,部分化石种与现生种的谱系演化关系尚不明确,因此成为古生物学家和进化生物学家关注的生物类群之一.采用现代分子生物学方法,提取扩增河北秦皇岛灵仙洞中鬣狗类化石的线粒体基因组古DNA片段,通过与基因库中已有鬣狗科动物各属种同源序列的对比分析,从分子水平确定该化石为斑鬣狗化石;基于古DNA序列数据构建的系统进化树显示,该地的斑鬣狗个体与我国东北地区及俄罗斯的化石斑鬣狗具有较近的亲缘关系,而与西欧洞穴鬣狗及非洲现生斑鬣狗亲缘关系较远,显示出斑鬣狗演化的分子地理谱系. 相似文献