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A systematic assessment of Planctomycetales diversity in a South China Sea, deep‐sea sediment (1657 m) was conducted using the 16S rRNA gene analysis approach. PCR amplification of the samples from seven sediment layers (0.1, 1, 3, 5, 7, 9 and 11 m below the surface sediment) using the primer set Pla‐46‐F/1392‐R showed that the Planctomycetales existed within a limited range of sediment depths (≤ 5 m), and had a decreasing trend in diversity with increasing depth. The majority of the retrieved Pla‐46‐F/1392‐R sequences belonged to Pirellula‐related Planctomycetales, and two sequences retrieved from the 0.1‐m layer (GenBank accession numbers: DQ996944 and DQ996945 ) shared the same anammox‐related signature oligonucleotides and were closely related to commonly recognized anammox organisms. To identify new anammox‐related biomarkers, three primer sets were designed for amplifying the fragments of hydroxylamine oxidoreductase and S‐adenosylmethionine radical enzyme genes, but no related sequences were found. Our multiple 16S rRNA gene primer sets (Journal of Rapid Methods and Automation in Microbiology, 2008, in press) revealed even an higher diversity of Planctomycetales in the 0.1‐m layer of the sediment, especially at genus level. Our data profiled the distribution pattern of Planctomycetales diversity along sediment depths, and provided molecular evidence for the existence of anammox‐related bacteria in a new location, which broadens our understanding of Planctomycetales diversity in deep sea sediments.  相似文献   
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采用实时荧光定量PCR、高通量测序等方法对湛江湾沉积物中四个月份的反硝化细菌与厌氧氨氧化细菌的多样性和丰度进行了分析。结果表明:湛江湾沉积物中反硝化细菌和厌氧氨氧化细菌丰度在四个月份的变化和空间分布趋势为:nirS型反硝化细菌在二月份最高,四月份最低,且其平均丰度有从湛江湾湾内向湾口附近呈现先升高再降低的趋势;nirK型反硝化细菌丰度在九月份最高,十一月份最低;nosZ型反硝化细菌在四月份最高,其余月份变化不大;厌氧氨氧化细菌丰度在九月份最高,二月份最低。通过相关性分析结果表明,亚硝酸盐、铵盐等共同调控着湛江湾沉积物中反硝化和厌氧氨氧化细菌丰度变化。系统发育分析表明:湛江湾中存在着一些广泛分布的反硝化细菌,但也生活着一些新奇的nirK型和nosZ型反硝化细菌。对于厌氧氨氧化细菌而言,其主要属于浮霉菌门及Candidatus Scalindua属,具有较高的耐盐性,另外湛江湾海区的厌氧氨氧化细菌也生活着一类在其他地方没有的新分支。典范对应分析分析结果表明:硝酸盐显著影响湛江湾反硝化细菌和厌氧氨氧化细菌的群落结构。湛江湾沉积物中反硝化细菌和厌氧氨氧化细菌存在特殊的竞争与共存的关系,且由亚硝酸盐、硝酸盐、pH等多种环境因子共同驱动。  相似文献   
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沉积物中的异化硝酸盐还原过程对于海洋氮循环起着至关重要的作用。基于15N标记的培养技术是目前测定沉积物异化硝酸盐还原的主要手段。准确快速测定15N标记的产物(29N2、 30N2)是量化异化硝酸盐还原各个过程速率的关键。本研究自行组装膜进样质谱系统用于29N2和30N2的测定,对其测量条件进行了优化。结果表明,进样蠕动泵进样流速0.80 mL/min,进样时间3~3.5 min,恒温槽温度20~25℃,同时铜还原炉温度在300~600℃的条件下,^29N2/^28N2和^30N2/^28N2的测试精密度分别可以控制在0.1%和1%以内,比较适合29N2和30N2的测定。利用自组装的膜进样质谱系统结合15N标记的培养技术研究了青岛石老人沙滩沉积物中的异化硝酸盐还原过程。石老人沙滩沉积物不存在将硝酸盐完全还原为氮气好氧的反硝化。厌氧铵氧化、厌氧反硝化和异化硝酸盐还原为铵(Dissimilatory Nitrate Reduction to Ammonium,DNRA)的潜在速率(以湿沉积物N计)分别为(0.05±0.01) nmol/(cm^3·h),(2.32±0.21) nmol/(cm^3·h)和(1.02±0.15) nmol/(cm^3·h)。厌氧反硝化是硝酸盐异化还原主要的贡献者,其比例接近70%,其次是DNRA,比例可达30%,而厌氧铵氧化的贡献最低,仅为1%。在N2产生过程中,主要贡献者是反硝化,厌氧铵氧化的贡献仅为2%。  相似文献   
4.
We determined patterns of benthic metabolism and examined the relative importance of denitrification (DNF) and dissimilatory nitrate reduction to ammonium (DNRA) as sinks for nitrate (NO3) in intertidal sediments in the presence and absence of benthic microalgal (BMA) activity. By influencing the activity of BMA, light regulated the metabolic status of the sediments, and, in turn, exerted strong control on sediment nitrogen dynamics and the fate of inorganic nitrogen. A pulsed addition of 15N-labeled NO3 tracked the effect and fate of dissolved inorganic nitrogen (DIN) in the system. Under illuminated conditions, BMA communities influenced benthic fluxes directly, via DIN uptake, and indirectly, by altering the oxygen penetration depth. Under dark hypoxic and anoxic conditions, the fate of water column NO3 was determined largely by three competing dissimilatory reductive processes; DNF, DNRA, and, on one occasion, anaerobic ammonium oxidation (anammox). Mass balance of the added 15N tracer illustrated that DNF accounted for a maximum of 48.2% of the 15NO3 reduced while DNRA (a minimum of 11.4%) and anammox (a minimum of 2.2%) accounted for much less. A slurry experiment was employed to further examine the partitioning between DNF and DNRA. High sulfide concentrations negatively impacted rates of both processes, while high DOC:NO3 ratios favored DNRA over DNF.  相似文献   
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This study investigates the biogeochemical processes that control the benthic fluxes of dissolved nitrogen (N) species in Boknis Eck – a 28 m deep site in the Eckernförde Bay (southwestern Baltic Sea). Bottom water oxygen concentrations (O2−BW) fluctuate greatly over the year at Boknis Eck, being well-oxygenated in winter and experiencing severe bottom water hypoxia and even anoxia in late summer. The present communication addresses the winter situation (February 2010). Fluxes of ammonium (NH4+), nitrate (NO3) and nitrite (NO2) were simulated using a benthic model that accounted for transport and biogeochemical reactions and constrained with ex situ flux measurements and sediment geochemical analysis. The sediments were a net sink for NO3 (−0.35 mmol m−2 d−1 of NO3), of which 75% was ascribed to dissimilatory reduction of nitrate to ammonium (DNRA) by sulfide oxidizing bacteria, and 25% to NO3 reduction to NO2 by denitrifying microorganisms. NH4+ fluxes were high (1.74 mmol m−2 d−1 of NH4+), mainly due to the degradation of organic nitrogen, and directed out of the sediment. NO2 fluxes were negligible. The sediments in Boknis Eck are, therefore, a net source of dissolved inorganic nitrogen (DIN = NO3 + NO2 + NH4+) during winter. This is in large part due to bioirrigation, which accounts for 76% of the benthic efflux of NH4+, thus reducing the capacity for nitrification of NH4+. The combined rate of fixed N loss by denitrification and anammox was estimated at 0.08 mmol m−2 d−1 of N2, which is at the lower end of previously reported values. A systematic sensitivity analysis revealed that denitrification and anammox respond strongly and positively to the concentration of NO3 in the bottom water (NO3BW). Higher O2−BW decreases DNRA and denitrification but stimulates both anammox and the contribution of anammox to total N2 production (%Ramx). A complete mechanistic explanation of these findings is provided. Our analysis indicates that nitrification is the geochemical driving force behind the observed correlation between %Ramx and water depth in the seminal study of Dalsgaard et al. (2005). Despite remaining uncertainties, the results provide a general mechanistic framework for interpreting the existing knowledge of N-turnover processes and fluxes in continental margin sediments, as well as predicting the types of environment where these reactions are expected to occur prominently.  相似文献   
6.
反硝化与厌氧氨氧化作用是海洋结合态氮迁出的主要途径,15N示踪法是定量反硝化和厌氧氨氧化作用的新方法,它具有灵敏度高、可同步测量反硝化与厌氧氨氧化速率的优点.本研究开展了一系列方法学实验,以确定高纯氦气驱赶水样所含气体的时间、超声赶气时间、同位素比值质谱仪测量N2含量的精度、N2含量及其同位素组成测定的工作曲线以及示踪剂的最佳添加量等,从而确立起15N示踪同步测定海水反硝化和厌氧氨氧化速率的方法.所建立方法测量N2含量的相对标准偏差小于8%,可满足海洋反硝化与厌氧氨氧化速率测定的需要.应用该方法实测了厦门筼筜湖富氧与缺氧水体的反硝化与厌氧氨氧化速率,结果表明,缺氧底层水的反硝化速率[4.10~5.47μmol/(dm3·d)]比富氧表层水[0.43~0.46μmol/(dm3·d)]明显来得高,但缺氧底层水的厌氧氨氧化速率[0.00~0.12μmol/(dm3·d)]则比富氧表层水的速率[0.52~0.67μmol/(dm3·d)]低得多.  相似文献   
7.
为了反演珠江口过去环境的厌氧氨氧化活动状况,本文分析了来自珠江口3个站位的柱状沉积物中梯烷脂的含量,在所有的样品中均检测到了梯烷脂,表明珠江口地区存在厌氧氨氧化活动。P03沉积柱的梯烷脂总含量为0.16~4.13μg/g,L1为0.15~1.3μg/g,C2T为0.07~2.19μg/g。梯烷脂的垂直分布特征表明3个沉积柱中厌氧氨氧化细菌的来源可能不同,P03沉积柱中梯烷脂可能主要来源于沉积物中的厌氧氨氧化细菌,而L1梯烷脂可能来自上层水体和沉积物,C2T的厌氧氨氧化活动可能主要发生在底层缺氧水体中。将梯烷脂与总有机碳(TOC)作相关性分析,结果显示在TOC含量高的柱状样中,两者相关性好,TOC校准后的梯烷脂与原梯烷脂的分布趋势的一致性,表明梯烷脂含量能够指示厌氧氨氧化活动。对珠江口过去的厌氧氨氧化活动的重建表明P03站位沉积物中厌氧氨氧化活动自1970—1990增强,L1站位的厌氧氨氧化活动近十年来亦逐年增强,C2T站位上覆水体的厌氧氨氧化活动则呈现近几年快速增强的趋势。虽然本研究仅初步探讨了近些年来珠江口厌氧氨氧化活动的变化规律,但为进一步研究珠江口氮循环过程提供了良好的基础。  相似文献   
8.
太湖梅梁湾水土界面反硝化和厌氧氨氧化   总被引:18,自引:3,他引:15       下载免费PDF全文
运用无扰动芯样实验室内流动培养、稳定同位素示踪、同位紊气态产物测定及同位素配对技术,对太湖梅梁湾北部到南部的4个梯度样点的水土界面反硝化和厌氧氨氧化速率进行研究.结果表明,梅梁湾内及湾外开敞湖区4个样点的水土界面反硝化脱氮速率为(46.36±13.26)-(16.34±22,74)μmol/(m~2·h),厌氧氨氧化脱氮速率为(7.50±2.21)-(2.05±2.90)~mol/(m~2.b).梅梁湾北部河口区水土界面总脱氮能力明显高于梅梁湾南部及开敞湖区.通过对脱氮过程的进一步研究发现.北部脱氮过程主要以上覆水硝酸盐为底物的非耦合反硝化过程(D_w)为优势过程,而梅梁湾外开敞湖区则以沉积物硝化过程耦合控制的反硝化(D_n)为主.影响D_n、D_w在反硝化中比重的主要因素是沉积物溶氧侵蚀深度和上覆水NO_3~-.浓度的差异;梅梁湾厌氧氨氧化脱氮比例占总脱氮比例为12%-14%,湾外开敞湖区则占11%,影响其比例差异的主要因子是反硝化强度的大小及其反硝化中间产物--亚硝酸盐含量的差异.  相似文献   
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分析海洋水体及沉积物中厌氧氨氧化细菌所处的环境条件,比较海洋与淡水环境中其物种组成的差异,总结了其物种组成、丰度及厌氧氨氧化活性对环境因子的响应规律。认为厌氧氨氧化细菌物种组成受多种环境因子的影响。其中,盐度为影响其物种组成的最显著因素,如Candidatus Brocadia,Candidatus Kuenenia及Candidatus Scalindua分别适应淡水、寡盐和海水环境;同一地区,其物种组成在不同季节表现出明显差异,夏季的多样性高于冬季的;根据陆源厌氧氨氧化细菌多样性及海洋沉积物中浮霉菌门多样性随深度增加而减小的趋势,推断海洋沉积物中厌氧氨氧化细菌多样性与深度成反比。厌氧氨氧化细菌丰度、厌氧氨氧化活性与温度、NO-2及NO-3浓度之间成正相关;丰度与季节的关系,在不同地区的研究结果存在差异。未来厌氧氨氧化细菌研究工作重点应在其对氧浓度的耐受范围、海洋中厌氧氨氧化细菌多样性随深度的变化规律、导致其物种组成、丰度及厌氧氨氧化活性季节性差异的具体环境因子。  相似文献   
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缢蛏串联养殖经由饵料藻类养殖塘(俗称肥水塘)投放适量含氮化合物以提高生产效率,了解此过程中的沉积物氮转化对调控和管理河口养殖塘氮的收支具有重要意义。以福建九龙江口肥水-缢蛏养殖塘为研究对象,运用同位素示踪技术和高通量测序技术探究缢蛏塘和肥水塘沉积物厌氧氨氧化速率及微生物群落结构,并分析其环境调控机制。结果表明,肥水塘沉积物厌氧氨氧化速率为(1.76±0.11) nmol/(g·h),相对贡献为9.16%±0.40%,显著高于缢蛏塘(P<0.05)。缢蛏塘和肥水塘厌氧氨氧化微生物主要由Candidatus Scalindua、Ca.Kuenenia、Ca.Brocadia和Ca.Anammoximicrobium属组成。其中,Ca.Kuenenia属为养殖塘的优势菌属。沉积物厌氧氨氧化微生物多样性和丰富度呈显著的空间分布特征,肥水塘中生物多样性更高(P<0.05)。厌氧氨氧化微生物活性和群落结构差异主要受养殖土地利用方式、溶解氧(DO)、NH4+和NO3-含量等环境因子的调控。该研究在一定...  相似文献   
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