Experimental study on a sampling technique based on a freeze-sediments valve for deep-sea microorganism     

《Applied Ocean Research》2019

Deep-sea microorganism research has become a hot topic in life science, owing to its special value in high pressure and low temperature environment. If not kept the in-situ low temperature and high pressure, it will cause the microorganism to lose its activity and lead to a waste of resources. A freeze-sediments valve presents a promising solution to maintain the low temperature and high pressure in situ, improve the success rate of sampling and shorten the sampling time. A series of experiments were conducted to characterize the freeze-sediments valve, including the sampling time without leakage, adaptation to different sediments and the effect of the length, etc. Most important of all, temperature change of sediments is observed in all experiments. Experimental results indicated that the freeze-sediments valve was formed in 5 min without leakage and the freeze-sediments valve could be applied to different sediments without limitations on sediments type and mineral content. Considering the pressure retaining capacity and formation time of freeze-sediments valve, it was found that the freeze-sediments valve with a length of 60–80 mm has good pressure retaining capacity whose value was 41.3–48.4 Mpa and short formation time which was 5 min. Precooling the sampler could be used to shorten the sampling time in the actual environment application. This sampling technique can play a vital role in maintaining in-situ low temperature at −2 to −4 ° Celsius in all the experiments. According to the tests, the sampling technique based on the freeze-sediments valve had the potential to solve the problem of keeping in-situ temperature, low sampling success rate and long sampling time in the future.  相似文献   

痛泻要方对溃疡性结肠炎患者中医证候及肠道菌群的影响          下载免费PDF全文

俞媛  王卿华  陈媛洁 《应用海洋学学报》2020,36(12):12

目的：观察痛泻要方对溃疡性结肠炎（UC）肝郁脾虚证的临床疗效及其对肠道菌群的影响。方法：将40例UC肝郁脾虚证患者随机分为治疗组和对照组,每组各20例。对照组予美沙拉嗪肠溶片治疗,治疗组在对照组基础上加用痛泻要方治疗。2组疗程均为12周,比较2组治疗前后中医证候积分及肠道菌群的变化。结果：治疗前,2组中医证候积分、主要肠道菌群数目比较,差异无统计学意义（P＞0.05）。与治疗前比较,治疗后2组中医证候积分均降低,有益菌群（双歧杆菌、乳酸杆菌）数目均明显上升,而有害菌群（大肠埃希菌）数目明显下降,且治疗组的指标改善情况均优于对照组,差异有统计学意义（均P<0.05）。结论：痛泻要方可有效改善UC肝郁脾虚证患者的中医证候,纠正患者肠道菌群的紊乱,提高临床疗效。  相似文献   

艾比湖原核微生物菌群结构演变与环境因子关系分析          下载免费PDF全文

马雪莉  吕杰  马媛  吕光辉 《盐湖研究》2020,28(4):79-90

用非培养法获得新疆维吾尔自治区艾比湖湖底沉积物原核微生物菌群组成,并与已有盐湖原核微生物菌群数据进行比对,分析湖泊由淡水湖向盐湖演替过程中原核微生物群落结构变化规律。实验获得艾比湖原核微生物16S rRNA基因序列,并从NCBI数据库下载赛里木湖、柴窝堡湖和顿巴斯他乌盐湖3个湖泊的非培养原核微生物16S rRNA基因序列数据。用不同盐湖细菌和古菌16S rRNA序列信息构建系统发育树并与其理化指标进行典型性相关分析。同源比对及聚类结果显示,艾比湖湖底沉积物中细菌包括4个门,拟杆菌门(Bacteroidetes)占克隆文库的64%,变形菌门(Proteobacteria)占9.4%,厚壁菌门(Firmicutes)占3.4%,放线菌门(Actinobacteria)占2.6%,此外含有未分类类群20.6%。古菌含有两个门,广古菌门(Euryarchaeota,98.3%)和盐纳古菌门(Nanohaloarchaeota,1.7%)。不同盐湖系统发育树结果显示,随盐度增加,盐湖细菌从变形菌门向拟杆菌门演替；古菌从奇古菌门和泉古菌门向广古菌门和盐纳古菌门演替。RDA结果显示,Na⁺、Cl-、SO₄2-和矿化度对盐湖原核微生物多样性结构起到决定性的作用,K⁺、Mg²⁺和Ca²⁺对艾比湖菌群结构影响作用最为显著。原核微生物群落会随着湖水盐浓度的增加和盐湖化学成分的不同而发生演替。  相似文献   

不同饲养方式对乌鳢(Ophiocephalus argus)肠道微生物群落结构差异及种类多样性的影响     

盛鹏程  周冬仁  韩新荣  胡晓波  叶雪平  徐磊  周聃  吴琦芳  郝贵杰 《海洋与湖沼》2020,51(1):148-155

以乌鳢(Ophiocephalus argus)为研究对象,采用不同日粮饲喂,试验W1组饲喂冰鲜鱼,试验W2组饲喂畜禽内脏。12周后,取肠道内容物,利用16S rDNA技术研究投喂不同饲粮的乌鳢肠道生物群落结构差异和微生物多样性,分别获得W1组和W2组乌鳢肠道细菌有效序列51124和39298条。结果分析表明;W1组和W2组物种注释(operational taxonomic unit,OTU)数目分别为2631和4114条,分类地位明确的细菌种类分别隶属5个属和49个属,W1组和W2组乌鳢肠道细菌种类差异很大。W1组乌鳢肠道细菌的优势类群是邻单胞菌属(Plesiomonas)、狭义梭菌属(Clostridium sensu stricto)、鲸蜡菌属(Cetobacterium);W2组乌鳢肠道细菌的优势类群是狭义梭菌属(Clostridium sensu stricto)、邻单胞菌属(Plesiomonas)、Spartobacteria、甲基副球菌属(Methyloparacoccus)、杆菌属(Alsobacter)、Saccharibacteria、分支杆菌属(Mycobacterium)。W2组乌鳢肠道细菌香农指数高于W1组乌鳢肠道细菌,表明前者肠道细菌多样性大于后者。本实验揭示了畜禽内脏饲喂乌鳢肠道细菌的群落种类多样性、OTU丰富度和物种总数均高于冰鲜鱼饲喂乌鳢;W1组肠道有益菌OTU丰富度大于W2组,且W2组还存在一些潜在致病菌。本研究为乌鳢的健康养殖和后续肠道微生物资源的挖掘提供了理论依据。  相似文献   

二价铁氧化对铁锰循环功能微生物活性的影响及机制          下载免费PDF全文

屈婧祎  童曼  袁松虎 《地球科学》2021,46(2):632-641

地质微生物是沉积环境中铁、锰氧化还原循环的主要驱动因子,铁锰共存环境中二价铁氧化对不同铁、锰循环功能微生物活性的影响差异和机制尚不清楚.以铁还原菌Shewanella oneidensis MR-1、铁氧化菌Pseudogulbenkiania sp.strain 2002、锰氧化菌Pseudomonas putida MnB1和Leptothrix discophora SS-1作为代表性的铁、锰循环功能微生物,利用平板计数、荧光显微镜等手段探究了Fe(II)氧化对功能微生物活性的影响差异及机制.结果表明0.05 mM Fe2+氧化60 min可使MR-1和MnB1的活菌数量降低4~5个数量级,SS-1及S.2002无显著失活.Fe(II)氧化产生的吸附态。OH和胞内。OH是细菌失活的主要原因,胞外H₂O₂、胞外游离态。OH和三价铁氧化物是细菌失活的次要原因,SS-1及S.2002产生了氧化应激反应,成功抵御了活性氧化物种.   相似文献   

凡纳滨对虾肠道微生物宏基因组Solexa 测序及其初步分析   总被引：1，自引：0，他引：1  

严雪平  袁剑波  刘斌 《海洋科学》2012,36(6):9-14

CTAB-酚/氯仿法提取新鲜凡纳滨对虾(Litopenaeus vannamei)肠道微生物宏基因组 DNA.结果表明: CTAB-酚/氯仿法提取总 DNA 的浓度达到92.5 ng/μL,半定量 PCR 法检测微生物基因组相对含量为69.9%.凡纳滨对虾肠道微生物宏基因组用于 Solexa 测序,生物信息学分析结果显示宏基因数据中64.1%的数据属于未知序列,35.5%属于真核生物,而已知的微生物和病毒序列所占比例仅有0.4%  相似文献   

Comparison of intestinal bacterial communities in grass carp, Ctenopharyngodon idellus, from two different habitats     

倪加加  余育和  张堂林  高雷 《中国海洋湖沼学报》2012,30(5):757-765

The intestinal bacteria of vertebrates form a close relationship with their host.External and internal conditions of the host,including its habitat,affect the intestinal bacterial community.Similarly,the intestinal bacterial community can,in turn,influence the host,particularly with respect to disease resistance.We compared the intestinal bacterial communities of grass carp that were collected from farm-ponds or a lake.We conducted denaturing gradient gel electrophoresis of amplified 16S rRNA genes,from which 66 different operational taxonomic units were identified.Using both the unweighted pair-group method with arithmetic means clustering and principal component analysis ordination,we found that the intestinal bacterial communities from the two groups of pond fish were clustered together and inset into the clusters of wild fish,except for DF-7,and there was no significant correlation between genetic diversity of grass carp and their intestinal bacterial communities(Mantel one-tailed test,R=0.157,P=0.175).Cetobacterium appeared more frequently in the intestine of grass carp collected from pond.A more thorough understanding of the role played by intestinal microbiota on fish health would be of considerable benefit to the aquaculture industry.  相似文献   

小肠空气灌肠双源CT检查与胶囊内镜小肠检查对比研究     

黄银平  沈比先  陈胜基  周娜  保莲  陈丽兴 《CT理论与应用研究》2010,19(3):123-129

目的:探讨小肠空气灌肠双源CT检查对小肠疾病的诊断价值。方法:15例临床怀疑小肠病变的患者,行双源CT检查前或后3天内行胶囊内镜检查。其中,男8例,女7例,年龄最大者42岁,最小者23岁。症状主要为腹痛10例,脓血便4例,不明原因消瘦1例,病程最长4年,最短1月。结果:胶囊内镜未见异常8例,双源CT检查亦未见异常;双源CT诊断克罗恩病4例,与胶囊内镜及临床诊断一致;胶囊内镜可疑肿瘤3例,双源CT发现2例并作出良恶性诊断,其中1例为空肠间质瘤,1例为回肠腺癌,经手术病理证实;仅1例胶囊内镜可疑3cm大小肿瘤,双源CT未见异常,结合MRI检查及临床,证实为假阳性。结论:小肠空气灌肠双源CT检查,不仅可以显示小肠器质性病变范围、与邻近结构的关系,而且可以结合临床鉴别炎性病变与肿瘤性病变,并对肿瘤性病变做出良恶性鉴别;还可以为胶囊内镜所见病变定位及排除假阳性问题。  相似文献   

Methods for extraction of microorganism DNA from glacier surface snow     

PeiYing Yan  ShuGui Hou  Tuo Chen  ShuHong Zhang  WeiJun Sun 《寒旱区科学》2012,4(6):0484-0489

In order to thoroughly investigate the diversity of glacier microorganisms, four DNA extraction methods with different lysis patterns were tested and two screened methods (the Bosshard-Bano method and the Zhou method) were optimized for the most effective form of the filter membrane (cut vs. uncut), the DNA extraction method, and the precipitation method. The two optimized methods were then compared with the commercial Mo-Bio DNA extraction kit, and the results showed that the kit was generally suitable for extraction of microorganism DNA from glacier surface snow. Procedurally, it was found that a modified Bosshard- Bano method (i.e., cutting the filter membrane into pieces, using a specific lysis pattern [lysozyme (5 mg/mL)-protease K (1 mg/mL)-CTAB (1%)-SDS (1%)], performing the extraction only once by chloroform-isoamyl alcohol (24:1), and conducting DNA precipitation by pure ethanol) was also an effective and less expensive method for extraction of microorganism DNA from glacier surface snow.  相似文献   

烟台市区河流入海口微生物群落的分析     

蒲洋  李文军  王凯  赵彦宏  秦松 《海洋科学》2017,41(7):9-15

2015年4月在烟台市区4条主要河流(辛安河、逛荡河、鱼鸟河和夹河)入海口处采集12个样品,利用PCR-DGGE方法分析了此区域的细菌群落组成和优势菌群。通过统计学手段对DGGE图谱进行分析,结果表明4条河流入海口细菌群落丰富度都较高,12个取样点扩增的DGGE条带数都在30以上,样品的Shannon指数均高于3.3,个别甚至可达3.61。其中,辛安河和逛荡河的Shannon指数平均值均高于鱼鸟河和夹河,夹河多样性最低;而且UPGMA聚类分析结果显示地理位置越接近,其细菌组成的相似度越高。在DGGE电泳条带中选取14条主要条带进行扩增和序列测定,所得到的序列进行了系统进化分析发现4条河流入海口的优势菌群主要为变形杆菌门(Proteobacteria)和拟杆菌门(Bacteroidetes)。这与近年来关于山东近岸海域细菌多样性的研究结果相符合,为研究和保护烟台市区河口处环境提供科学依据。  相似文献