Use of Sonication for Enhanced Sampling of Attached Microbes from Groundwater Systems     

Murray Close  Phil Abraham  Judith Webber  Eliza Cowey  Bronwyn Humphries  Graham Fenwick  Simon Howard  Kimberly Huynh  Travis Grace  Pierre-Yves Dupont  Louise Weaver 《Ground water》2020,58(6):901-912

The vast majority of microorganisms in aquifers live as biofilms on sediment surfaces, which presents significant challenges for sampling as only the suspended microbes will be sampled through normal pumping. The use of a down-well low frequency sonicator has been suggested as a method of detaching microbes from the biofilm and allowing rapid sampling of this community. We developed a portable, easy to use, low-frequency electric sonicator and evaluated its performance for a range of well depths (tested up to 42 m below ground level) and casing types. Three sonicators were characterized in laboratory experiments using a 1 m long tank filled with pea gravel. These included a commercially available pneumatic sonicator, a rotating flexible shaft sonicator, and the prototype electric sonicator. The electric sonicator detached between 56 and 74% of microbes grown on gravel-containing biobags at distances ranging between 2 and 50 cm from the sonicator. The field testing comprises of a total of 55 sampling events from 48 wells located in 4 regions throughout New Zealand. Pre- and post-sonication samples showed an average 33 times increase in bacterial counts. Microbial sequence data showed that the same classes are present in pre- and post-sonicated samples and only slight differences were seen in the proportions present. The sampling process was rapid and the significant increases in bacterial counts mean that microbial samples can be quickly obtained from wells, which permits more detailed analysis than previously possible.  相似文献   

Shock deformation confirms the impact origin for the Cerro do Jarau,Rio Grande do Sul,Brazil, structure     

Wolf Uwe Reimold  Alvaro Penteado Crsta  Maximilian Hasch  Astrid Kowitz  Natalia Hauser  Joana Paula Sanchez  Luiz Sergio Amarante Simes  Grace Juliana de Oliveira  Patrice T. Zaag 《Meteoritics & planetary science》2019,54(10):2384-2397

Cerro do Jarau is a conspicuous, circular morpho‐structural feature in Rio Grande do Sul State (Brazil), with a central elevated core in the otherwise flat “Pampas” terrain typical for the border regions between Brazil and Uruguay. The structure has a diameter of approximately 13.5 km. It is centered at 30^o12′S and 56^o32′W and was formed on basaltic flows of the Cretaceous Serra Geral Formation, which is part of the Paraná‐Etendeka Large Igneous Province (LIP), and in sandstones of the Botucatu and Guará formations. The structure was first spotted on aerial photographs in the 1960s. Ever since, its origin has been debated, sometimes in terms of an endogenous (igneous) origin, sometimes as the result of an exogenous (meteorite impact) event. In recent years, a number of studies have been conducted in order to investigate its nature and origin. Although the results have indicated a possible impact origin, no conclusive evidence could be produced. The interpretation of an impact origin was mostly based on the morphological characteristics of the structure; geophysical data; as well as the occurrence of different breccia types; extensive deformation/silicification of the rocks within the structure, in particular the sandstones; and also on the widespread occurrence of low‐pressure deformation features, including some planar fractures (PFs). A detailed optical microscopic analysis of samples collected during a number of field campaigns since 2007 resulted in the disclosure of a large number of quartz grains from sandstone and monomict arenite breccia from the central part of the structure with PFs and feather features (FFs), as well as a number of quartz grains exhibiting planar deformation features (PDFs). While most of these latter grains only carry a single set of PDFs, we have observed several with two sets, and one grain with three sets of PDFs. Consequently, we here propose Cerro do Jarau as the seventh confirmed impact structure in Brazil. Cerro do Jarau, together with Vargeão Dome (Santa Catalina state) and Vista Alegre (Paraná State), is one of very few impact structures on Earth formed in basaltic rocks.  相似文献   

Combining pixel and object based image analysis of ultra-high resolution multibeam bathymetry and backscatter for habitat mapping in shallow marine waters     

Daniel Ierodiaconou  Alexandre C. G. Schimel  David Kennedy  Jacquomo Monk  Grace Gaylard  Mary Young  Markus Diesing  Alex Rattray 《Marine Geophysical Researches》2018,39(1-2):271-288

Habitat mapping data are increasingly being recognised for their importance in underpinning marine spatial planning. The ability to collect ultra-high resolution (cm) multibeam echosounder (MBES) data in shallow waters has facilitated understanding of the fine-scale distribution of benthic habitats in these areas that are often prone to human disturbance. Developing quantitative and objective approaches to integrate MBES data with ground observations for predictive modelling is essential for ensuring repeatability and providing confidence measures for habitat mapping products. Whilst supervised classification approaches are becoming more common, users are often faced with a decision whether to implement a pixel based (PB) or an object based (OB) image analysis approach, with often limited understanding of the potential influence of that decision on final map products and relative importance of data inputs to patterns observed. In this study, we apply an ensemble learning approach capable of integrating PB and OB Image Analysis from ultra-high resolution MBES bathymetry and backscatter data for mapping benthic habitats in Refuge Cove, a temperate coastal embayment in south-east Australia. We demonstrate the relative importance of PB and OB seafloor derivatives for the five broad benthic habitats that dominate the site. We found that OB and PB approaches performed well with differences in classification accuracy but not discernible statistically. However, a model incorporating elements of both approaches proved to be significantly more accurate than OB or PB methods alone and demonstrate the benefits of using MBES bathymetry and backscatter combined for class discrimination.  相似文献   

Controls on Arctic glacier-fed river water temperature     

Christopher J. Mellor  Stephen J. Dugdale  Grace Garner  Alexander M. Milner 《水文科学杂志》2017,62(4):499-514

The impact of climate change on Arctic rivers is expected to be severe. There is therefore a need for greater understanding of Arctic river temperature processes. This study quantifies the spatio-temporal variability of water temperatures in the Kårsa River, Sweden. Water temperature was monitored over two summers within the main proglacial channel and within braids fed by different sources. Longitudinal and lateral temperature patterns were assessed in relation to prevailing hydro-meteorology. Temperature metrics in the main channel increased with distance downstream but were moderated by a large lake, while temperatures in the braids were dependent upon channel source. The high temperature standard deviation and inter-site differences within the braids highlight the importance of braided channels for creating thermal habitat heterogeneity. Temperatures were dependent on hydro-meteorological conditions, with sensitivity to air temperature maximized during cooler, rainy conditions. These results shed new light on Arctic river temperature patterns and their controlling processes.  相似文献   

FRICTION IN THE TIDAL CURRENTS OF THE BRISTOL CHANNEL.     

S. F. Grace D. Sc. 《Geophysical Journal International》1936,3(9):388-395

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The Semi-diurnal Lunar Tidal Motion of Lake Baikal and the Derivation of the Earth-tides from the Water-tides.     

S. F. Grace  D. Sc.   《Geophysical Journal International》1931,2(S7):301-309

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Voracious planktonic hydroids: unexpected predatory impact on a coastal marine ecosystem     

Laurence P. Madin  Stephen M. Bollens  Erich Horgan  Mari Butler  Jeffrey Runge  Barbara K. Sullivan  Grace Klein-Macphee  Edward Durbin  Ann G. Durbin  Donna Van Keuren  Stphane Plourde  Ann Bucklin  M. Elizabeth Clarke 《Deep Sea Research Part II: Topical Studies in Oceanography》1996,43(7-8)

Hydroids are typically attached, benthic cnidarians that feed on a variety of small prey. During sampling on Georges Bank in spring 1994, we found huge numbers of hydroids suspended in the plankton. They fed on young stages of copepods that are an important prey for fish, as well as on young fish themselves. Two independent methods were used to estimate feeding rates of the hydroids; both indicate that the hydroids are capable of consuming from 50% to over 100% of the daily production of young copepods. These results suggest that hydroids can have a profound effect on the population dynamics of zooplankton and young fish on Georges Bank.  相似文献   

John MacCulloch: precursor of the British 'Geological Survey'     

DAVID A. CUMMING 《Geology Today》1985,1(4):124-125

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Sediment Suspension and Deposition Across Restored Oyster Reefs of Varying Orientation to Flow: Implications for Restoration     

Allison M. Colden  Kelsey A. Fall  Grace M. Cartwright  Carl T. Friedrichs 《Estuaries and Coasts》2016,39(5):1435-1448

The eastern oyster, Crassostrea virginica, is a prominent ecosystem engineer, whose reefs exhibit strikingly consistent morphologies at multiple spatial scales throughout its North American range. These distinct morphologies are thought to form by interactions of nascent reef structures with hydrodynamics. We carried out two field studies to determine if historical reef configurations applied in a restoration context would improve reef persistence and restoration outcomes. We collected seabed and water column observations across constructed reefs of three orientations representative of those found historically throughout the oyster’s range: parallel or perpendicular to tidal currents or circular. Areas adjacent to reefs were sites of fine sediment trapping, with lower flow velocities, evidence of particle settling, and more fine sediments on the seabed relative to off-reef reference sites. The water column above the reef crest exhibited higher acoustic backscatter, higher flow velocities, and larger particles in suspension, consistent with local erosion of flocculated fine sediment from the reef crest. Perpendicular reefs produced conditions that were more conducive to reef persistence and improved oyster performance, including high flow velocities and enhanced resuspension of sediments from the reef, compared to parallel or circular reefs. Particle trapping in areas between reefs has the potential to inhibit reef growth between existing reef structures, providing support for hypotheses of landscape-scale reef pattern formation. Oyster reef restoration efforts can benefit from this improved understanding of biophysical interactions arising from reef orientation that contribute to sediment dynamics on constructed oyster reefs.  相似文献   

Metal accumulation in surface salt marsh sediments of the Bay of Fundy,Canada     

Grace A. Hung  Gail L. Chmura 《Estuaries and Coasts》2007,30(4):725-734

We measured the amount of arsenic, chromium, copper, lead, nickel, vanadium, and zinc accumulated over a five-year period from 1997 to 2002 in surface sediments of seven salt marshes along the New Brunswick coast of the Bay of Fundy, Canada. Study sites extended from outer to inner Bay, spanning a gradient in tidal range (6–12 m) and mean sediment deposition rate (0.27–1.76 cm yr⁻¹). In each study site, metal concentrations were measured in low and high marsh areas. Concentrations of chromium, nickel, and zinc appear to be within their natural range, while arsenic, lead, and vanadium are enriched in some sites. Calculated sediment metal loadings rates showed variability among marsh sites that closely followed sediment deposition patterns, suggesting sediment deposition rate is the driving factor of short-term metal accumulation in Fundy marshes. The value of salt marshes as a sink for metals may be enhanced by high sedimentation rates.  相似文献