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DNA条形码是指利用一段相对较短的标准DNA片段,对物种进行识别和鉴定。目前该技术在动物、植物物种鉴定领域已经得到了广泛的研究和应用。在藻类的研究中,尚未确定一条统一的标准条形码基因,现阶段都是使用2条或2条以上基因序列来完成物种鉴定。对于形态多样、种类繁多的海洋红藻,常用的DNA条形码基因有COI基因(Partial cytochrome c oxidase I gene)、UPA基因(Partial 23SrRNA gene,universal plastid amplicon)、LSU基因(Partial 28SrRNA gene)和rbcL基因(The large subunit of ribulose-1,5-bisphosphate carboxylase)等,这些基因中2个或3个基因的互补运用准确有效地提高了红藻的鉴定准确率,尤其是COI基因的种间差异大足够区分相近物种。本文在概述条形码的原理及其标准的基础上,阐述了红藻DNA条形码鉴定研究的新进展以及常用几种基因片段的优缺点,并对条形码在红藻鉴定中存在的问题进行了分析,对其应用前景进行了展望。 相似文献
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丛粒藻形态多样性与遗传多样性研究 总被引:1,自引:0,他引:1
观察了采集自不同地点的3株丛粒藻(Botryococcus braunii)(AGB-Bb01、AGB-Bb02和AGB-Bb03)的显微结构和亚显微结构,以18S rDNA和ITS区序列为目标位点比较分析了16株丛粒藻藻株的遗传距离和序列相似性,重建了系统发生树。结果表明:丛粒藻不同地理株在细胞大小、聚落大小和聚落细胞数目方面存在较明显的差异,亚显微结构显示不同藻株的杯状鞘厚度及细胞包埋程度也存在差异;不同地理株间具有较高的遗传多样性,系统发生树显示所有藻株可分成2个簇群和4个亚群,存在一定程度的地理隔离。研究证明了18S rDNA和ITS区序列是进行丛粒藻基因分型和遗传多样性研究的良好位点。本研究为系统了解丛粒藻的遗传多样性和开展优良藻株选育工作奠定了基础。 相似文献
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DNA barcode assessment of Ceramiales (Rhodophyta) in the intertidal zone of the northwestern Yellow Sea 总被引:1,自引:0,他引:1
A total of 142 specimens of Ceramiales(Rhodophyta) were collected each month from October 2011 to November 2012 in the intertidal zone of the northwestern Yellow Sea. These specimens covered 21 species,14 genera,and four families. Cluster analyses show that the specimens had a high diversity for the three DNA markers,namely,partial large subunit r RNA gene(LSU),universal plastid amplicon(UPA),and partial mitochondrial cytochrome c oxidase subunit I gene(COI). No intraspecific divergence was found in our collection for these markers,except for a 1–3 bp divergence in the COI of Ceramium kondoi,Symphyocladia latiuscula,and Neosiphonia japonica. Because short DNA markers were used,the phylogenetic relationships of higher taxonomic levels were hard to evaluate with poor branch support. More than half species of our collection failed to find their matched sequences owing to shortage information of DNA barcodes for macroalgae in Gen Bank or BOLD(Barcode of Life Data) Systems. Three specimens were presumed as H eterosiphonia crispella by cluster analyses on DNA barcodes assisted by morphological identification,which was the first record in the investigated area,implying that it might be a cryptic or invasive species in the coastal area of northwestern Yellow Sea. In the neighbor-joining trees of all three DNA markers,H eterosiphonia japonica converged with D asya spp. and was distant from the other Heterosiphonia spp.,implying that H. japonica had affinities to the genus Dasya. The LSU and UPA markers amplified and sequenced easier than the COI marker across the Ceramiales species,but the COI had a higher ability to discriminate between species. 相似文献
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Cobetia marina is a model proteobacteria in researches on marine biofouling. Its taxonomic nomenclature has been revised many times over the past few decades. ~To better understand the role of the surface-associated lifestyle of C. marina and the phylogeny of the family Halomonadaceae, we sequenced the entire genome of C. marina JCM 21022 ~T using single molecule real-time sequencing technology(SMR~T) and performed comparative genomics and phylogenomics analyses. ~The circular chromosome was 4 176 300 bp with an average GC content of 62.44% and contained 3 611 predicted coding sequences, 72 t RNA genes, and 21 r RNA genes. ~The C. marina JCM 21022 ~T genome contained a set of crucial genes involved in surface colonization processes. ~The comparative genome analysis indicated the significant diff erences between C. marina JCM 21022 ~T and Cobetia amphilecti KMM 296(formerly named C. marina KMM 296) resulted from sequence insertions or deletions and chromosomal recombination. Despite these diff erences, pan and core genome analysis showed similar gene functions between the two strains. ~The phylogenomic study of the family Halomonadaceae is reported here for the first time. We found that the relationships were well resolved among every genera tested, including Chromohalobacter, Halomonas, Cobetia, Kushneria, Zymobacter, and Halotalea. 相似文献
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We cloned and sequenced a prtV-like gene from Vibrio anguillarum M3 strain. This prtV gene encodes a putative protein of 918 amino acids, and is highly homologous to the V. cholerae prtV gene. We found that a prtV insertion mutant strain displayed lower gelatinase activity on gelatin agar, lower protease activity against azocasein, and
lower activity for four glycosidases. This prtV mutant strain also had increased activity for two esterases in its extracellular products, as analyzed by the API ZYM system.
In addition, the prtV mutant strain exhibited decreased growth in turbot intestinal mucus and reduced hemolytic activity on turbot erythrocytes.
Infection experiments showed that the LD50 of the prtV mutant strain increased by at least 1 log compared to the wild-type in turbot fish. We propose that prtV plays an important role in the pathogenesis of V. anguillarum. 相似文献
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Behavioral and physiological responses to light are the two major mechanisms by which natural microphytobenthic assemblages adapt to the intertidal environment and protect themselves from light stress. The present study investigated these photoresponses with diff erent light intensities over 8 h of illumination, and used a specific inhibitor(Latrunculin A, Lat A) for migration to compare migratory and non-migratory microphytobenthos(MPB). Photosynthetic activity was detected using rapid light curves and induction curves by chlorophyll fluorescence. It showed distinct variation in migratory responses to diff erent light intensities; high light induced downward migration to avoid photoinhibition, and low and medium light(50–250 μmol/(m~2 ·s)) promoted upward migration followed by downward migration after certain period of light exposure. No significant difference in non-photochemical quenching(NPQ) or PSII maximal quantum yield(F v/F m) was detected between low and medium light irradiance, possibly indicating that only high light influences the photosynthetic capability of MPB. Decreased photosynthetic activity, indicated by three parameters, the maximum relative electron transport rate(r ETR_(max)), minimum saturating irradiance(E _k) and light utilization coefficient(α), was observed in MPB after exposure to prolonged illumination under low and medium light. Lat A ef fectively inhibited the migration of MPB in all light treatments and induced lower F v/F _m under high light(500 and 100 μmol/(m~2 ·s)) and prolonged illumination at 250 μmol/(m~2 ·s), but did not significantly influence F _v/F m under low light(0–100 μmol/(m~2 ·s)) or NPQ. The increase of NPQ in Lat A treatments with time implied that the MPB assemblages can recover their physiological photoprotection capacity to adapt to light stress. Non-migratory MPB exhibited lower light use efficiency(lower α) and lower maximum photosynthetic capacity(lower r ETR_(max)) than migratory MPB under light intensities above 250 μmol/(m ~2 ·s) after 4.0 h illumination. 相似文献
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条斑紫菜锰超氧化物歧化酶原核表达及多克隆抗体制备 总被引:1,自引:0,他引:1
研究紫菜抗逆的分子机制,将本实验室克隆的条斑紫菜(Porphyra yezoensisUeda)锰超氧化物歧化酶(manganese superoxide dismutase,Mn SOD)基因全长cDNA克隆到质粒pET-30c(+)中,构建原核表达载体pET-S,转化大肠杆菌BL21(DE3)表达Mn SOD,表达产物的分子量约为30 KDa。利用不同浓度的Mn2+诱导重组Mn SOD的表达,可以检测到比活力随Mn2+浓度增高而上升的趋势。用重组Mn SOD免疫新西兰大白兔,制备了多克隆抗体,多克隆抗体的效价为1∶8 000。免疫印迹实验(Western Blot)表明该多克隆抗体具有很好的特异性。 相似文献