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1.
金黄色葡萄球菌(Staphylococcus aureus)是近岸海域海水中的主要病原菌,严重威胁接触者的安全。抗生素处理是治疗金黄色葡萄球菌感染的重要手段,其耐药性的发生受到了高度重视。采用全基因组重测序与KEGG富集分析结合的方法,对红霉素(erythromycin)、氯霉素(chloramphenicol)和万古霉素(vancomycin)处理后的耐盐金黄色葡萄球菌(S.aureus ZS01)和不耐盐金黄色葡萄球菌(S.aureus 502A)进行耐药机制研究。结果表明,S.aureus 502A经抗生素处理后发生突变的程度大于S.aureus ZS01,二者在经过氯霉素处理发生了更大程度的突变。红霉素、氯霉素和万古霉素处理主要影响了金黄色葡萄球菌的致病能力;红霉素和氯霉素可能通过影响金黄色葡萄球菌脂类的代谢引起其耐药性的变化。除此之外,三种抗生素处理均出现了较多TIGR01741家族蛋白和假设蛋白基因的突变,推测与菌株的耐药性和致病性相关。耐盐金黄色葡萄球菌可通过外排系统作用产生红霉素耐药性,不耐盐菌株因细胞壁成分相关基因的突变提高了对万古霉素的耐受性。研究结果可为耐盐和不耐盐金黄色葡萄球菌的耐药机制及抗生素对金黄色葡萄球菌致病性影响的研究提供基础数据。 相似文献
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鳗草(Zostera marina)作为适应在海洋环境中生长和繁殖的多年生被子植物,是研究海洋高等植物分子进化的理想物种。热激转录因子(HSF)在植物细胞的修复、蛋白的转录修饰以及信号转导中具有重要的作用。为全面了解鳗草基因组中HSF基因家族信息,本文采用生物信息学手段,在鳗草基因组中鉴定了11个ZmHSFs基因,基因长度差异较大,但均不含有内含子。系统发育结果显示11个基因分为HSFA和HSFB两大分支。顺式作用元件分析表明ZmHSFs基因很可能同时受到温度和光照等多种非生物因素的调节。此外,鳗草HSF基因家族数目明显小于其他高等植物,二次入海过程可能导致部分ZmHSFs基因丢失。转录组数据表明HSF基因在3种不同器官中均有表达,且存在一定的器官表达差异。 相似文献
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采用6对微卫星分子标记,分析了马氏珠母贝(Pinctada martensii)白、黑、黄、红4种壳色家系的遗传结构。结果表明:4种壳色家系在6个位点的平均等位基因数为4.17,有效等位基因数为1.297~1.819;平均观测杂合度为0.083~0.212,平均期望杂合度为0.207~0.341;Shannon多样性指数为0.366~0.616;平均多肽信息(PIC)含量为0.257~0.442;4个壳色家系哈-温平衡指数均发生了极显著的偏离,4个家系间的群体再分效应的固定指数FST值为0.113~0.793;与马氏珠母贝普通养殖群体及壳色选育系F5相比,4种壳色家系之间遗传距离变大,遗传多样性降低。 相似文献
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利用紫外线照射灭活的同源精子,激活栉孔扇贝(Chlamys farreri)卵子分裂,获得雌核发育胚胎,流式细胞仪检测胚胎细胞平均单倍体率为82.5%。对获得的胚胎进行全基因组扩增,获得足量的基因分型模板,利用高分辨率溶解曲线(HRM)技术对其进行96个单核苷酸多态性(SNP)位点分型。结果显示,诱导雌核发育胚胎的位点检出率为96.27%,其中99.06%的位点分型结果与相应雌性亲本相符;单个胚胎中只表现一种等位形式的位点占91.67%~96.88%,平均为94.81%,较雌性亲本的纯合位点比例(64.25%)明显提高。本研究利用灭活同源精子诱导获得栉孔扇贝雌核发育胚胎,并利用单个胚胎的全基因组扩增产物进行基因位点分析,为扇贝人工诱导雌核发育个体的早期多基因位点检测和评价提供参考。 相似文献
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CHI Shan QIAN Hao LI Tianyong WANG Xumin LIU Cui REN Lei TANG Xuexi LIU Tao 《海洋学报(英文版)》2014,33(9):139-151
In the past two decades, many studies have focused on the classification within genus Laminaria, ultimately trying to divide it into two subgroups or genera: Laminaria and Saccharina. A significant debate still surrounds the question of its division, as the conflicting phylogenetic hypotheses that have resulted from the classification studies are based on different taxon sampling, molecular markers, or analysis methods. It is aimed at elucidate the molecular phylogeny within Laminaria and Saccharina. The nine species of Laminariales are sampled from northern Asia and Europe, and 23 new sequences in the nuclear, plastid, and mitochondrial genomes are determined to identify their taxonomic status. The phylogenetic analyses of 71 species are performed, including representatives from six of the seven families of the order Laminariales, based on three separate data sets. An evidence is provided to strongly support a clear split that maintains the two recognized genera, Laminaria and Saccharina, with Laminaria appearing to be the ancestor group. Further, analyses indicate that all taxa in Saccharina and Laminaria did not form a monophyletic lineage, instead Laminariaceae and Lessoniaceae grouped together interlacedly, and Costariaceae appeared as the sister taxon of the Lessoniaceae–Laminariaceae clade. In the phylogenetic analysis, mitochondrial c oxidase I(COI) sequences appeared to be the most credible molecular marker which was more befitting than nuclear encoded internal transcribed spacer(ITS) and plastid encoded rbcL for establishment of Laminariales systematics. It is the most comprehensive phylogeny of the order Laminariales, and contributes to an enhanced understanding and estimation of the phylogenetic relationships for the economically important seaweeds, Laminaria and Saccharina. 相似文献
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Eight microsatellite markers were used to analyze genetic diversity, level of inbreeding, and effective population size of spawner and recaptured populations of Chinese shrimp(Fenneropenaeus chinensis) during stock enhancement in the Bohai Bay in 2013. A total of 254 and 238 alleles were identified in the spawner and recaptured populations, respectively, and the numbers of alleles(N_a) were 8–63 and 6–60, respectively. The numbers of effective alleles(N_e) were 2.52–21.60 and 2.67–20.72, respectively. The polymorphism information content ranged from 0.529 to 0.952. The observed heterozygosity(H_o) values(0.638–0.910 and 0.712–0.927) were lower than the expected heterozygosity(H_e) values(0.603–0.954 and 0.625–0.952), which indicated that the two populations possessed a rich genetic diversity. In 16 tests(2 populations×8 loci), 13 tests deviated from the HardyWeinberg equilibrium. F_(is) values were positive at seven loci and the inbreeding coefficients(F) of the two populations estimated by trio ML were 13.234% and 11.603%, suggesting that there was a relatively high degree of inbreeding. A certain level of inbreeding depression had occurred in the Chinese shrimp population. F_(st) values ranged from 0 to 0.059, with a mean of 0.028, displaying a low level of genetic differentiation in the two populations. Effective population sizes(3 060.2 and 3 842.8) were higher than the minimum number suggested for retaining the evolutionary potential to adapt to new environmental conditions. For enhancement activity in 2014,the ideal number of captured shrimp spawners should have ranged from 7 686 to 19 214 to maintain genetic diversity and effective population size. Further strategies to adjust the balance of economic cost, fishing effort and ideal number of shrimp spawners to maintain a satisfactory effective population size for ensuring the sustainability of Chinese shrimp are proposed. 相似文献
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