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The present study used two mitochondrial markers (16S rRNA and COI) to assess the genetic diversity of a newly founded Lessepsian migrant mussel, Brachidontes pharaonis, in Tunisian waters. The species appears to be restricted to only one population in Rades Harbour, in the northern part of the country. Phylogenetic analyses revealed the monophyly of B. pharaonis in Tunisia. Both molecular markers revealed high genetic variability of the B. pharaonis population. Haplotype networks and demographic analyses confirmed the recent expansion events within this population. Multiple human-mediated introduction events involving several founder populations and intensive population growth rates are probably the main causes of the high polymorphism observed within this invasive mollusc. 相似文献
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胡最 《地球信息科学学报》2020,22(5):1083-1094
传统聚落是民族传统文化遗产的重要组成部分,对社会经济和文化建设具有重要的价值。针对现有研究缺乏探讨传统聚落景观基因（简称景观基因）蕴藏的地理信息特征及理解方法,论文从以下方面开展了深入分析：① 地理信息包含了语义描述、几何形态、属性特征、维度、时空框架、尺度、要素相互关系（空间关联）、演化过程（存在状态）等属性;② 景观基因是一种特殊的文化因子,蕴含着丰富的哲理,是认识传统聚落特征的分析方法,也是文化符号的集合;③ 景观基因包含了空间定位、载体特征、历史与文化特征等丰富的地理信息。根据前述分析结果,论文从符号化、数据挖掘、谱系分析与空间格局制图等途径系统地探讨了景观基因地理信息特征的理解方法。论文认为：在地理时空大数据与地理服务日益深化发展的背景下,结合GIS原理探讨景观基因的地理信息特征对于延伸地理信息科学的内涵,深化传统聚落的地学认识,促进人文GIS的发展具有积极的意义,今后应该继续加强相关方法探索。 相似文献
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Consensus maps of cloned plant cuticle genes 总被引：1，自引：0，他引：1
Plant cuticle,which covers the plant surface,consists of waxes and cutins,and is associated with plant drought,cold,and salt resistance.Hitherto,at least 47 genes participating in the formation of plant cuticle have been cloned from Arabidopsis thaliana,Oryza sativa,Zea mays,Ricinus communis,Brassica napus,and Medicago truncatula;and about 85% of them encode proteins sharing above 50% identities with their rice homologous sequences.These cloned cuticle genes were mapped in silico on different chromosomes of rice and Arabidopsis,respectively.The mapping results revealed that plant cuticle genes were not evenly distributed in both genomes.About 40% of the mapped cuticle genes were located on chromosome 1 in Arabidopsis,while 20% of the mapped cuticle genes were located on chromosome 2 but none on chromosome 12 in rice.Some cloned plant cuticle genes have several rice homologous sequences,which might be produced by chromosomal segment duplication.The consensus map of cloned plant cuticle genes will provide important clues for the selection of candidate genes in a positional cloning of an unknown cuticle gene in plants. 相似文献
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分别研究了徐闻3种滨珊瑚的ITS1和ITS2基因的碱基组成和G+C含量,并和已上传至Genbank上的其他9种滨珊瑚的ITS序列进行比较,研究了徐闻3种滨珊瑚的系统发生关系.序列分析结果显示,3种滨珊瑚的ITS1的长度为205 bp～209 bp,G+C含量为37.6％～45.5％,ITS2的长度为192 bp～226 bp,G+C含量为45.1％～50.7％,利用MEGA4.1软件计算滨珊瑚属基于ITS1和ITS2基因的平均遗传距离分别为0.097和0.200.基于ITS1和ITS2的NJ系统进化树都显示出,灰黑滨珊瑚位于进化树的基部,是原始的类群,普格滨珊瑚是进化类群,澄黄滨珊瑚是过渡类群. 相似文献
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为揭示"鱼-藻"和"鱼-虾-藻"混养对异枝江蓠(Gracilaria bailinae)生长性能、表面附生细菌群落和抗生素抗性基因(antibiotic resistance genes,ARGs)的影响,阐明异枝江蓠表面附生细菌群落与生长性能、ARGs之间的关系,利用16S rDNA高通量测序技术和Real-time qPCR技术分析了异枝江蓠表面附生细菌群落和ARGs的组成与差异,冗余分析(RDA)探讨细菌群落与生长性能、ARGs之间的关联。结果表明:(1)"鱼-虾-藻"混养会促进异枝江蓠的生长性能,增加表面附生细菌群落的多样性。(2)异枝江蓠表面附生细菌群落主要属于变形菌门、蓝藻门、浮霉菌门和拟杆菌门,不同混养方式中优势菌属组成不同,"鱼-虾-藻"混养优势菌属多样性较高。(3)"鱼-虾-藻"混养的异枝江蓠ARGs/MGEs的相对丰度大多高于"鱼-藻"混养。(4)RDA分析表明,生长性能主要与Ralstonia、Blastopirellula等显著相关,ARGs/MGEs主要与Nitrosomonas、Alteromonas、Pleurocapsa;CC-7319等显著相关。"鱼-虾-藻"混养能够增强异枝江蓠的生长性能,提高异枝江蓠表面附生细菌群落的多样性。但"鱼-虾-藻"混养能够增加异枝江蓠ARGs/MGEs的相对丰度,存在一定的生态风险。因此,在注重经济效益的同时也要关注可能存在的对人类健康的危害。研究结果将有助于海水养殖环境的优化,为大型海藻在海水养殖业中的应用与推广提供理论基础。 相似文献
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为探究长牡蛎在繁殖期间的糖原含量与类胰岛素基因(cgMIP123、cgMIP4、cgMILP7、cgILP)和相关转录调控因子(cgPdx)相对表达量的相关性,自2020年5月至2020年10月采集了山东胶南养殖海区的长牡蛎,测定了血糖含量、糖原含量、条件指数、类胰岛素基因相对表达量及环境因子(酸度、温度、盐度)等数据,采用多元统计方法对数据进行分析。logistic回归分析结果显示,长牡蛎配子排放前后血糖含量和内脏团糖原含量具有显著差异。构建的回归模型可以通过血糖含量和内脏团糖原含量准确判断配子是否已经排放,区分度C-index为0.903,Hosmer-Lemeshow拟合优度检验χ2值为9.06,P>0.05,验证结果显示该模型可靠。多元线性回归分析结果显示:条件指数与cgMIP123和cgMIP4基因的相对表达量具有相关性,R2为0.91,P值为0.0076,极显著相关;内脏团和唇瓣组织的糖原含量与ILPs和cgPdx相对表达量具有一定的相关性,其中cgMILP7的相对表达量与内脏团和唇瓣组织的糖原含量呈负相关,cgPdx相对表达量与唇瓣组织的糖原含量呈负相关,cgMIP4和cgILP的相对表达量与糖原含量呈正相关。 相似文献
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SUN Pengfei BAI Jie LI Kuiran ZHAO Yangguo TIAN Weijun BAI Xiaoyan TIAN Yanzhao 《中国海洋大学学报(英文版)》2020,19(1):124-134
The effects of phenanthrene(Phe)on the denitrification activity and denitrifying genes(narG,nirS and nosZ)were evaluated by dose-response experiments in sediments of Dagu River Estuary(DRE)and Jiaozhou Bay(JZB).The results showed that potential denitrification activity(PDA),N2O,NO3−and NO2−reduction rates of both areas were inhibited with an increase of Phe concentrations.The PDA,N2O,NO3−and NO2−reduction rates of both areas was highest and lowest in the control(DRE:0.453,0.427,7.439 and 3.222mgNkg−1 h−1,JZB:0.592,0.555,8.470 and 3.793mgNkg−1 h−1)and highest Phe amended treatments(DRE:0.069,0.001,4.486,and 1.563 mgNkg−1 h−1;JZB:0.114,0.024,5.527 and 2.200 mgNkg−1 h−1).The inhibition rate of PDA was highest,follow by NO2−reduction and then NO3−reduction.Moreover,with the increasing of Phe concentrations,total bacteria count and the abundance of denitrifying genes were decreased.And N2O accumulation was promoted with the addition of Phe for both areas.Based on the comparison of EC50 values,denitrifiers harboring three genes were more sensitive to Phe than PDA,and denitrifiers harboring nirS gene were more sensitive,followed by nosZ gene,and then narG gene.Furthermore,according to correlation analysis,the relative abundance of denitrifying genes was much more positively correlated with PDA,NO3−and NO2−reduction than total bacteria count.In addition,the denitrification activity and total bacteria count in JZB were more inhibited than that of DRE.This study is useful for understanding the impact of Phe pollution on denitrification in estuary and marine sediments,with profound implications for the management of aquatic ecosystems regarding eutrophication(N-removal)and greenhouse effect. 相似文献
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为探析长江口沉积物-水界面砷的迁移转化机制,本文分析了2019年夏季长江口4个站位上覆水和间隙水中总As浓度及形态的剖面变化特征,耦合氧化还原敏感元素(Fe、Mn和S)的剖面变化剖析了沉积物-水界面砷循环的Fe-Mn-S控制机制,同时结合砷相关功能基因探讨了沉积物-水界面砷迁移转化的微生物调控过程,估算了沉积物-水界面总As的扩散通量。结果表明,除A7-4站位外,长江口其他3个站位间隙水总As以As3+为主要存在形态,且总As浓度均在上覆水中为最低值(0.748~1.57 μg·L-1),而在间隙水中随着深度增加而逐渐增加并在6~9 cm深度达到峰值(7.14~26.9 μg·L-1)。间隙水总As及As3+浓度的剖面变化趋势与溶解态Fe2+、Mn2+相似,其均在中间层出现高值,说明沉积物Fe/Mn还原带砷的释放可能是随固相Fe(Ⅲ)或Mn(Ⅳ)的还原而转移到间隙水中的。氧化层和Fe/Mn还原带过渡区间隙水砷浓度与砷异化还原菌功能基因arrA和arsC丰度存在对应关系(除A1-3站外),说明砷异化还原菌将溶解As5+或固相As5+还原为溶解As3+可能是该过渡层砷迁移转化的另一重要过程。硫酸盐还原带的间隙水总As和As3+浓度降低,但由于间隙水的低S2-浓度不利于砷硫化物生成,因此深层间隙水砷可能与铁硫矿物结合而被移除。底层环境氧化还原条件是影响沉积物-水界面砷迁移转化的重要因素,随底层水DO浓度的降低,砷迁移转化更倾向于微生物还原控制。长江口沉积物-水界面总As的扩散通量为1.18×10-7~2.07×10-7 μmol·cm-2·s-1,均表现为沉积物间隙水中总As向上覆水释放,即沉积物是研究区域水体总As的来源之一。 相似文献
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Toxic and non-toxic Microcystis sp. are morphologically indistinguishable cyanobacteria that are increasingly posing health problems in fresh water systems by producing odours and/or toxins. Toxic Microcystis sp. produces toxicologically stable water soluble toxic compounds called microcystins (MCs) that have been associated with cases of aquatic life and wildlife poisoning and kills including some cases of human illnesses/deaths around the world. Thus, the need for rapid detection of toxic Microcystis sp. in surface water is imperatively a necessity for early mitigation purposes. Genomic DNA from potentially toxic Microcystis sp. comprises of ten microcystin synthetase (mcy) genes of which six major ones are directly involved in MCs biosynthesis. In Polymerase Chain Reaction (PCR) methodsmcy genes can be amplified from intracellular/extracellular genomic DNA using PCR primers. However, little is known about the limitations of sourcing genomic DNA templates from extracellular DNA dissolved in water. In this work, filtered water (0.45 μM) from a Microcystis infested Dam (South Africa) was re-filtered on 0.22 μM syringe filters followed by genomic DNA isolation and purification from micro-filtrates (9 mL). Six major mcy genes (mcyABCDEG) from the isolated DNA were amplified using newly designed as well as existing primers identified from literature. PCR products were separated by gel electrophoresis and visualized after staining with ethidium bromide. The limitation of using dissolved DNA for amplification of mcy genes was qualitatively studied by establishing the relationship between input DNA concentrations (10.0–0.001 ng/μL) and the formation of respective PCR products. The amplification of mcyA gene using new primers with as little as 0.001 ng/μL of DNA was possible. Other mcy gene sensitivities reached 0.1 ng/μL DNA dilution limits. These results demonstrated that with appropriately optimized PCR conditions the method can provide accurate cost-effective tools for rapid detection of toxic Microcystis sp. in water giving early information for water quality monitoring against MC producing cyanobacteria. 相似文献