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Phylogenomic analysis of transcriptomic sequences of mitochondria and chloroplasts for marine red algae (Rhodophyta) in China 总被引：1，自引：1，他引：0
JIA Shangang WANG Xumin QIAN Hao LI Tianyong SUN Jing WANG Liang YU Jun LI Xingang YIN Jinlong LIU Tao WU Shuangxiu 《海洋学报(英文版)》2014,33(2):86-93
The chloroplast and mitochondrion of red algae （Phylum Rhodophyta） may have originated from different endosymbiosis. In this study, we carried out phylogenomic analysis to distinguish their evolutionary lin-eages by using red algal RNA-seq datasets of the 1 000 Plants （1KP） Project and publicly available complete genomes of mitochondria and chloroplasts of Rhodophyta. We have found that red algae were divided into three clades of orders, Florideophyceae, Bangiophyceae and Cyanidiophyceae. Taxonomy resolution for Class Florideophyceae showed that Order Gigartinales was close to Order Halymeniales, while Order Graci-lariales was in a clade of Order Ceramials. We confirmed Prionitis divaricata （Family Halymeniaceae） was closely related to the clade of Order Gracilariales, rather than to genus Grateloupia of Order Halymeniales as reported before. Furthermore, we found both mitochondrial and chloroplastic genes in Rhodophyta under negative selection （Ka/Ks〈1）, suggesting that red algae, as one primitive group of eukaryotic algae, might share joint evolutionary history with these two organelles for a long time, although we identified some dif-ferences in their phylogenetic trees. Our analysis provided the basic phylogenetic relationships of red algae, and demonstrated their potential ability to study endosymbiotic events. 相似文献
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本文研究了秋茄正常和缺绿幼苗叶片的叶绿素含量和叶绿体结构,结果表明,缺绿植株叶片中叶绿素a,b及总量均远低于正常植株叶片,它们的含量均不到正常植株叶片的10％,缺绿叶片的叶绿体结构也与正常叶片存在着较大的差异,缺绿片叶绿体中没有基粒堆,几乎没有淀粉体,嗜锇体数目也比较少,但存在着类囊体。 相似文献
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在全球范围内广泛暴发的石莼属绿潮既包括大规模暴发的跨海域绿潮,也包括小规模暴发的局地绿潮。我国有关绿潮致灾物种的研究对象主要集中于黄海绿潮浒苔,而针对局地绿潮致灾物种的研究尚处于起步阶段。针对局地绿潮物种的鉴定和分布调查是有效预防和监测潜在大规模绿潮暴发的重要环节。本文对2020年11月初于山东烟台第一海水浴场暴发的石莼属绿潮进行了初步研究。经随机采样获得了12株藻体,根据tufA分子标记初步将其中11株鉴定为Ulvalaetevirens。本研究完成了U. laetevirens的一个代表性株系CNS00533的叶绿体基因组构建和解析。叶绿体基因组为110 889 bp,含有71个蛋白编码基因、27个tRNA基因和3个rRNA基因(rrl、rrn和rrn5)。烟台海域U.laetevirens株系叶绿体基因组基因组成和排列顺序与爱尔兰海域U.laetevirens株系MT179351完全一致,DNA序列相似性为99.8%,进一步证明CNS00533为U.laetevirens。此外,U.laetevirens的烟台株系与爱尔兰株系的叶绿体基因组也存在差异,烟台株系比爱尔兰株系多了5个I型内含子和1个II型内含子,导致叶绿体基因组长度增加7kb。CNS00533与U.rigidaMT179352叶绿体基因组之间存在多个不同的长片段插入序列(763—2 346 bp), DNA序列相似性也较低(93.1%);与U. australis MT179348相比差异更大,存在一个较大(覆盖45个基因)的基因组反转事件。在基于71个蛋白编码基因的遗传进化树中, CNS00533与U. laetevirens MT179351聚类在一枝,与U. rigida MT179352遗传距离较近,与U. australis MT179348的遗传距离很远,表明U. laetevirens、U. rigida和U. australis为石莼属的3个不同物种。2020年11月烟台海域局地绿潮事件的原因种U. laetevirens在我国近海绿潮事件中首次报道,本研究对该物种的分子进化分析将有助于对我国近海绿潮监测、物种鉴定提供数据支持和理论依据。 相似文献
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脱水对生物结皮中齿肋赤藓光合色素含量和叶绿体结构的影响 总被引：3，自引：2，他引：1
通过脱水对生物结皮中齿肋赤藓叶绿体结构特征和光合色素含量的影响研究,结果表明,在脱水过程中,齿肋赤藓光合色素含量及叶绿体结构变化特征表现为4个阶段:①启动期,脱水0～2h,光合色素含量与完全湿润时差异不显著(P0.05),此时透射电镜下叶绿体中基粒片层结构和类囊体清晰,纵向排列,叶绿体双层膜系统保持完好;②快速增加期,脱水2～6h内,光合色素含量快速升高,在脱水6h时达最大值,此时叶绿体结构发育最为充分,嗜锇颗粒数量最多且集中分布;③相对稳定期,脱水6～10h,光合色素含量在达到最大值后,逐渐降低,但差异不显著(P0.05),叶绿体结构依然完整;④缓慢衰退期,脱水10h后,直至完全干燥,光合色素含量逐渐降低,完全干燥时叶绿体趋于解体。研究还表明,齿肋赤藓光合色素含量变化明显滞后于形态结构变化,其含量在完全湿润时并非最高,而在脱水6h时(RWC为26.4%)达最大值,而后随含水量降低而降低,与种子植物光合色素含量随含水量降低不同,这可能与其内部结构修复有关,再水化后光合色素完全恢复,说明齿肋赤藓光合色素对水分的响应是可逆的。 相似文献
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海藻共附生细菌密切参与宿主的生长发育、营养吸收等重要过程,浒苔(Ulva prolifera)是构成黄海绿潮的唯一优势种,对其共附生细菌开展群落结构分析,有望为成灾机制研究提供重要线索。由于植物叶绿体基因组同时具备原核特征和高拷贝数,会严重干扰共附生细菌基于16S rDNA的序列扩增。高等植物中开发了通用引物799F,利用其3′末端与植物同源区的非配对双碱基,可实现对细菌来源序列的特异性扩增。本文针对多个浒苔群体样本,首次评价了引物799F在藻类中的适用性,发现799F的3′末端与浒苔叶绿体同源区仅存在非配对单碱基,其扩增仍会受到浒苔叶绿体严重干扰。在引物799F的基础上,设计了新引物800F,与通用反向引物1492R配对扩增细菌16S rDNA中具高分辨率的V5-V9可变区,配合使用具热启动功能、同时不具校对功能的DNA聚合酶,可基本完全避免浒苔叶绿体来源序列的扩增,并阐明了方法的原理。优化的引物扩增方案可用于浒苔共附生细菌群落结构分析。 相似文献
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Marine microalga Isochrysis galbana is an important feed species with a high nutritional value.Different from other uni-cellular algae,its cell contains two chloroplasts which are the major sites for lipid synthesis.Here,we optimized a chloroplast isola-tion approach suitable for the isolation of I.galbana chloroplasts and determined the purity and integrity of the isolated chloroplasts through microscopic observations and enzyme activity assay.The chloroplast lipids were analyzed with a ultrahigh-performance li-quid chromatography-Q Exactive Orbitrap-mass spectrometry.This newly developed isolation approach is simple and reliable to isolate chloroplasts with high integrity and purity.The average yield of intact chloroplasts was 15.3%±0.1%.Glycolipids and acyl-glycerols were the main chloroplast lipids.Glycolipids accounted for 56.6%of chloroplast lipid.Digalactosyldiacylglycerol(DGDG),monogalactosyldiacylglycerol(MGDG)and sulfoquinovosyldiacylglycerol(SQDG)were the main glyceroglycolipids.The fatty acyl R1/R2 were mostly 18:4/16:1,18:3/16:1 and 18:4/18:5 in DGDGs,14:0/18:4,18:4/18:5,18:4/18:4 and 18:3/18:4 in MGDGs and 16:0/14:0,16:0/18:3,and 18:4/18:3 in SQDGs.In addition,diacylglycerol(DAG)was the most abundant acylglycerols;the content of 22:6/18:4-DAG was the highest.There was a little amount of glycosphingolipid(GSL)in chloroplast.Digalactosylmonoglyceride(DGMG),monogalactosylmonoglyceride(MGMG),sulfoquinovosylmonoacylglycerol(SQMG),monoglyceride(MAG),phospholi-pids(PLs),ceramide(Cer)and betaine lipids were nearly undetectable in chloroplast.The fatty acid proportions of DGDGs,MGDGs,SQDGs,DAGs,triglycerides(TAGs)and GSLs were either higher or lower than or similar to those of whole-cell.Collectively,our isolation approach is applicable to many aspects of chloroplast biology,and may offer a reference for the isolation of chloroplasts from other marine microalgae. 相似文献
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Phylogenomic analysis of transcriptomic sequences of mitochondria and chloroplasts of essential brown algae (Phaeophyceae) in China 总被引：1，自引：1，他引：0
JIA Shangang WANG Xumin LI Tianyong QIAN Hao SUN Jing WANG Liang YU Jun REN Lufeng YIN Jinlong LIU Tao WU Shuangxiu 《海洋学报(英文版)》2014,33(2):94-101
The chloroplast and mitochondrion of brown algae （Class Phaeophyceae of Phylum Ochrophyta） may have originated from different endosymbiosis. In this study, we carried out phylogenomic analysis to distinguish their evolutionary lineages by using algal RNA-seq datasets of the 1 000 Plants （1KP） Project and publicly available complete genomes of mitochondria and chloroplasts of Kingdom Chromista. We have found that there is a split between Class Phaeophyceae of Phylum Ochrophyta and the others （Phylum Cryptophyta and Haptophyta） in Kingdom Chromista, and identified more diversity in chloroplast genes than mitochondrial ones in their phylogenetic trees. Taxonomy resolution for Class Phaeophyceae showed that it was divided into Laminariales-Ectocarpales clade and Fucales clade, and phylogenetic positions of Kjellmaniella crassi-folia, Hizikia fusifrome and Ishige okamurai were confirmed. Our analysis provided the basic phylogenetic relationships of Chromista algae, and demonstrated their potential ability to study endosymbiotic events. 相似文献
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为了探讨柠条适应极端干旱的生理生态机制,对盆栽柠条停止浇水造成土壤持续干旱直到叶片完全脱落,然后复水。干旱和复水期间,对土壤、叶片和枝条的相对含水量、叶片和枝条中的叶绿素含量以及超微结构进行了测定和观察。结果表明,干旱脱水过程中叶片中的色素含量下降,枝条中类胡萝卜素含量下降。复水4 d后,叶片中色素含量和枝条中类胡萝卜素含量上升并逐步达到正常水平。超微结构研究表明,柠条嫩枝的亚细胞组织中普遍含有叶绿体。正常条件下,无论是枝条还是叶片的亚细胞组织,叶绿体紧贴细胞壁。叶绿体中的类囊体排列整体有序。随着干旱的加剧,叶绿体脱离细胞壁,向细胞中央靠近。严重干旱造成了叶片叶肉细胞和叶绿体结构不可恢复性的破坏,包括外膜和膜片层结构,类囊体膜解体,淀粉粒消失,部分细胞器裂解成碎片。而嫩枝的亚细胞组织和叶绿体都保持完整。因此,柠条通过叶片脱落减少光照面积来适应极端干旱对自身造成的伤害,通过保持枝条中叶绿体的完整性和一部分叶绿素为复水条件下光合作用的快速恢复提供了保证。 相似文献
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The genetic diversity of Artemisia halodendron(Asteraceae), a constructive and dominant species in Horqin Sandy Land,was investigated to examine the genetic relationships with different hydrothermal regions in Horqin Sandy Land. We sequenced chloroplast DNA(cp DNA) fragments(trn L–F) of 243 plants from 10 populations across the Horqin Sandy Land.The analyses of cp DNA variation identified seven haplotypes. A low level of haplotype diversity(H_d=0.706) and nucleotide diversity(π=0.0013) was detected. Haplotypes clustered into two tentative clades. Low genetic differentiation among regions was consistently indicated by hierarchical analyses of molecular variance(AMOVA). Across the sampled populations, the haplotype distributions were differentiated with hydrothermal gradients. 相似文献