Use of Sonication for Enhanced Sampling of Attached Microbes from Groundwater Systems     

Murray Close  Phil Abraham  Judith Webber  Eliza Cowey  Bronwyn Humphries  Graham Fenwick  Simon Howard  Kimberly Huynh  Travis Grace  Pierre-Yves Dupont  Louise Weaver 《Ground water》2020,58(6):901-912

The vast majority of microorganisms in aquifers live as biofilms on sediment surfaces, which presents significant challenges for sampling as only the suspended microbes will be sampled through normal pumping. The use of a down-well low frequency sonicator has been suggested as a method of detaching microbes from the biofilm and allowing rapid sampling of this community. We developed a portable, easy to use, low-frequency electric sonicator and evaluated its performance for a range of well depths (tested up to 42 m below ground level) and casing types. Three sonicators were characterized in laboratory experiments using a 1 m long tank filled with pea gravel. These included a commercially available pneumatic sonicator, a rotating flexible shaft sonicator, and the prototype electric sonicator. The electric sonicator detached between 56 and 74% of microbes grown on gravel-containing biobags at distances ranging between 2 and 50 cm from the sonicator. The field testing comprises of a total of 55 sampling events from 48 wells located in 4 regions throughout New Zealand. Pre- and post-sonication samples showed an average 33 times increase in bacterial counts. Microbial sequence data showed that the same classes are present in pre- and post-sonicated samples and only slight differences were seen in the proportions present. The sampling process was rapid and the significant increases in bacterial counts mean that microbial samples can be quickly obtained from wells, which permits more detailed analysis than previously possible.  相似文献   

The isotopic signature of monsoon conditions,cloud modes,and rainfall type          下载免费PDF全文

Costijn Zwart  Niels C. Munksgaard  Alain Protat  Naoyuki Kurita  Dionisia Lambrinidis  Michael I. Bird 《水文研究》2018,32(15):2296-2303

This work provides a comprehensive physically based framework for the interpretation of the north Australian rainfall stable isotope record (δ¹⁸O and δ²H). Until now, interpretations mainly relied on statistical relationships between rainfall amount and isotopic values on monthly timescales. Here, we use multiseason daily rainfall stable isotope and high resolution (10 min) ground‐based C‐band polarimetric radar data and show that the five weather types (monsoon regimes) that constitute the Australian wet season each have a characteristic isotope ratio. The data suggest that this is not only due to changes in regional rainfall amount during these regimes but, more importantly, is due to different rain and cloud types that are associated with the large scale circulation regimes. Negative (positive) isotope anomalies occurred when stratiform rainfall fractions were large (small) and the horizontal extent of raining areas were largest (smallest). Intense, yet isolated, convective conditions were associated with enriched isotope values whereas more depleted isotope values were observed when convection was widespread but less intense. This means that isotopic proxy records may record the frequency of which these typical wet season regimes occur. Positive anomalies in paleoclimatic records are most likely associated with periods where continental convection dominates and convection is sea‐breeze forced. Negative anomalies may be interpreted as periods when the monsoon trough is active, convection is of the oceanic type, less electric, and stratiform areas are wide spread. This connection between variability of rainfall isotope anomalies and the intrinsic properties of convection and its large‐scale environment has important implications for all fields of research that use rainfall stable isotopes.  相似文献   

Sediment and nutrient storage in a beaver engineered wetland          下载免费PDF全文

Alan Puttock  Hugh A. Graham  Donna Carless  Richard E. Brazier 《地球表面变化过程与地形》2018,43(11):2358-2370

Beavers, primarily through the building of dams, can deliver significant geomorphic modifications and result in changes to nutrient and sediment fluxes. Research is required to understand the implications and possible benefits of widespread beaver reintroduction across Europe. This study surveyed sediment depth, extent and carbon/nitrogen content in a sequence of beaver pond and dam structures in South West England, where a pair of Eurasian beavers (Castor fiber) were introduced to a controlled 1.8 ha site in 2011. Results showed that the 13 beaver ponds subsequently created hold a total of 101.53 ± 16.24 t of sediment, equating to a normalised average of 71.40 ± 39.65 kg m². The ponds also hold 15.90 ± 2.50 t of carbon and 0.91 ± 0.15 t of nitrogen within the accumulated pond sediment. The size of beaver pond appeared to be the main control over sediment storage, with larger ponds holding a greater mass of sediment per unit area. Furthermore, position within the site appeared to play a role with the upper‐middle ponds, nearest to the intensively‐farmed headwaters of the catchment, holding a greater amount of sediment. Carbon and nitrogen concentrations in ponds showed no clear trends, but were significantly higher than in stream bed sediment upstream of the site. We estimate that >70% of sediment in the ponds is sourced from the intensively managed grassland catchment upstream, with the remainder from in situ redistribution by beaver activity. While further research is required into the long‐term storage and nutrient cycling within beaver ponds, results indicate that beaver ponds may help to mitigate the negative off‐site impacts of accelerated soil erosion and diffuse pollution from agriculturally dominated landscapes such as the intensively managed grassland in this study. © 2018 The Authors. Earth Surface Processes and Landforms published by John Wiley & Sons Ltd.  相似文献   

Impacts of Methane on Carbon Dioxide Storage in Brine Formations          下载免费PDF全文

Mohamad R. Soltanian  Mohammad A. Amooie  David R. Cole  Thomas H. Darrah  David E. Graham  Susan M. Pfiffner  Tommy J. Phelps  Joachim Moortgat 《Ground water》2018,56(2):176-186

In the context of geological carbon sequestration (GCS), carbon dioxide (CO₂) is often injected into deep formations saturated with a brine that may contain dissolved light hydrocarbons, such as methane (CH₄). In this multicomponent multiphase displacement process, CO₂ competes with CH₄ in terms of dissolution, and CH₄ tends to exsolve from the aqueous into a gaseous phase. Because CH₄ has a lower viscosity than injected CO₂, CH₄ is swept up into a ‘bank’ of CH₄‐rich gas ahead of the CO₂ displacement front. On the one hand, this may provide a useful tracer signal of an approaching CO₂ front. On the other hand, the emergence of gaseous CH₄ is undesirable because it poses a leakage risk of a far more potent greenhouse gas than CO₂ if the cap rock is compromised. Open fractures or faults and wells could result in CH₄ contamination of overlying groundwater aquifers as well as surface emissions. We investigate this process through detailed numerical simulations for a large‐scale GCS pilot project (near Cranfield, Mississippi) for which a rich set of field data is available. An accurate cubic‐plus‐association equation‐of‐state is used to describe the non‐linear phase behavior of multiphase brine‐CH₄‐CO₂ mixtures, and breakthrough curves in two observation wells are used to constrain transport processes. Both field data and simulations indeed show the development of an extensive plume of CH₄‐rich (up to 90 mol%) gas as a consequence of CO₂ injection, with important implications for the risk assessment of future GCS projects.  相似文献   

Punctuated,long-lived emplacement history of the Renard 2 kimberlite,Canada, revealed by new high precision U-Pb groundmass perovskite dating     

Ranger  Ilona M.  Heaman  Larry M.  Pearson  D. Graham  Muntener  Colleen  Zhuk  Volodymyr 《Mineralogy and Petrology》2018,112(2):639-651

Kimberlites are rare volatile-rich ultramafic magmas thought to erupt in short periods of time (<1 Myr) but there is a growing body of evidence that the emplacement history of a kimberlite can be significantly more protracted. In this study we report a detailed geochronology investigation of a single kimberlite pipe from the Renard cluster in north-central Québec. Ten new high precision ID-TIMS (isotope dilution – thermal ionization mass spectrometry) U-Pb groundmass perovskite dates from the main pipe-infilling kimberlites and several small hypabyssal kimberlites from the Renard 2 pipe indicate kimberlite magmatism lasted at least ~20 Myr. Two samples of the main pipe-infilling kimberlites yield identical weighted mean ²⁰⁶Pb/²³⁸U perovskite dates with a composite date of 643.8 ± 1.0 Myr, interpreted to be the best estimate for main pipe emplacement. In contrast, six hypabyssal kimberlite samples yielded a range of weighted mean ²⁰⁶Pb/²³⁸U perovskite dates between ~652-632 Myr. Multiple dates determined from these early-, syn- and late-stage small hypabyssal kimberlites in the Renard 2 pipe demonstrate this rock type (commonly used to date kimberlites) help to constrain the duration of kimberlite intrusion history within a pipe but do not necessarily reliably record the emplacement age of the main diatreme in the Renard cluster. Our results provide the first robust geochronological data on a single kimberlite that confirms the field relationships initially observed by Wagner (1914) and Clement (1982); the presence of antecedent (diatreme precursor) intrusions, contemporaneous (syn-diatreme) intrusions, and consequent (post-diatreme) cross-cutting intrusions. The results of this detailed U-Pb geochronology study indicate a single kimberlite pipe can record millions of years of magmatism, much longer than previously thought from the classical viewpoint of a rapid and short-duration emplacement history.

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Use of GIS and dasymetric mapping for estimating tsunami-affected population to facilitate humanitarian relief logistics: a case study from Phuket,Thailand     

Jitt-Aer  Kiatkulchai  Wall  Graham  Jones  Dylan  Teeuw  Richard 《Natural Hazards》2022,113(1):185-211

Natural Hazards - The 2004 Indian Ocean tsunami led to improvements in Thailand’s early warning systems and evacuation procedures. However, there was no consideration of better aid delivery,...  相似文献   

A revised evolutionary history of armadillos (Dasypus) in North America based on ancient mitochondrial DNA          下载免费PDF全文

Beth Shapiro  Russell W. Graham  Brandon Letts 《Boreas: An International Journal of Quaternary Research》2015,44(1):14-23

The large, beautiful armadillo, Dasypus bellus, first appeared in North America about 2.5 million years ago, and was extinct across its southeastern US range by 11 thousand years ago (ka). Within the last 150 years, the much smaller nine‐banded armadillo, D. novemcinctus, has expanded rapidly out of Mexico and colonized much of the former range of the beautiful armadillo. The high degree of morphological similarity between these two species has led to speculation that they might be a single, highly adaptable species with phenotypical responses and geographical range fluctuations resulting from environmental changes. If this is correct, then the biology and tolerance limits for D. novemcinctus could be directly applied to the Pleistocene species, D. bellus. To investigate this, we isolated ancient mitochondrial DNA from late Pleistocene‐age specimens of Dasypus from Missouri and Florida. We identified two genetically distinct mitochondrial lineages, which most likely correspond to D. bellus (Missouri) and D. novemcinctus (Florida). Surprisingly, both lineages were isolated from large specimens that were identified previously as D. bellus. Our results suggest that D. novemcinctus, which is currently classified as an invasive species, was already present in central Florida around 10 ka, significantly earlier than previously believed.  相似文献   

One Million Years tephra record at IODP Sites U1436 and U1437: Insights into explosive volcanism from the Japan and Izu arcs          下载免费PDF全文

Julie Christin Schindlbeck  Steffen Kutterolf  Susanne M. Straub  Graham D. M. Andrews  Kuo‐Lung Wang  Maryline J. Mleneck‐Vautravers 《Island Arc》2018,27(3)

The 1 Myr tephra records of IODP (International Ocean Discovery Program) Holes U1436A and U1437B in the Izu‐Bonin fore‐ and reararc were investigated in order to assess provenance and eruptive volumes, respectively. In total, 304 tephra samples were examined and 260 primary tephra layers were identified. Tephra provenance was determined by means of major and trace element compositions of glass shards and distinguished between Japan and Izu‐Bonin arc origin of the tephra layers. A total of 33 marine tephra compositions were correlated to the Japan arc and 227 to the Izu arc. Twenty marine tephra layers were correlated between the two drilling sites. Additionally, we defined eleven correlations of marine tephra deposits to major widespread Japanese eruptions; from the 1.05 Ma Shishimuta‐Pink Tephra to the 30 ka Aira‐Tn Tephra, both from Kyushu Island. These eruptions provide independent time markers within the sediment record and six correlations were used to date tephra layers from Japan in Hole U1436A to establish an alternative age model for this hole. Furthermore, the minimum distal tephra volumes of all detected events were calculated, which enabled the comparison of the tephra volumes that derived from the Japan and the Izu‐Bonin arcs. For some of the major Japanese eruptions these are the first volume estimations that also include distal deposits. All of the Japanese tephras derived from events with eruption magnitude M_v ≥ 5.6 and three of the investigated eruptions reach magnitudes M_v ≥ 7. Volcanic events of the Izu‐Bonin arc have mostly eruption magnitudes M_v ≤ 5.  相似文献   

Linkages between spatio‐temporal patterns of environmental factors and distribution of plant assemblages across a boreal peatland complex          下载免费PDF全文

Jeremy A. Graham  Jeremy A. Hartsock  Dale H. Vitt  R. Kelman Wieder  John J. Gibson 《Boreas: An International Journal of Quaternary Research》2016,45(2):207-219

Here we examine the arrangement of plant species across an oligotrophic bog/poor fen peatland complex in the North American boreal plain and the relationships of these species to their physical and chemical environment. A semi‐uniform spatial sampling approach was utilized to describe the species assemblages, pore‐water chemistry and physical condition of 100 plots throughout a single peatland complex. Regardless of sharing the same ground cover of Sphagnum mosses, the remaining species separated into four distinct assemblages, each with unique indicators. These species groups along with associated chemical and physical factors are organized into four ecosites: bog, margin (edge) and two poor fen ecosites. The plant assemblages of this peatland have a complex relationship with numerous gradients, both physical and chemical, including depth to water table, shade, pH, nutrient and base cation. Rather than being homogenous across the landscape, most environmental variables exhibit distinct spatial patterns and do so in relationship to the plant assemblages, forming spatially distinct ecosites across the complex. Base cation concentrations play a smaller role than previously thought in differentiating these ecosites, and in addition to shade and depth to water table, nitrogen in the form of dissolved organic nitrogen was highly related to the placement of these ecosites. Many significant chemical factors appear related to evaporative water loss within the peatland complex, and these chemical factors are used to differentiate the ecosites. However, the mediation of evaporative water loss is due largely to self‐generated responses of the plant assemblages related to shade through plant morphology and peat acrotelm development related to depth to water table. We conclude that plant species and associated environmental gradients act together to form spatially distinct ecosites. The distribution of these ecosites within this large, environmentally complex peatland is largely controlled by differing self‐generated responses along the hydrotopographical gradient of differential water loss.  相似文献   

Multi‐year water balance assessment of a newly constructed wetland,Fort McMurray,Alberta          下载免费PDF全文

Erin M. Nicholls  Sean K. Carey  Elyn R. Humphreys  M. Graham Clark  Gordon B. Drewitt 《水文研究》2016,30(16):2739-2753

Oil sands mining in Alberta transforms the boreal landscape of forests and wetlands into open pits, tailings ponds and overburden piles. Whereas reclamation efforts have primarily focused on upland forests, rebuilding wetland systems has recently become a motivation for research. Wetland creation and sustainability in this region is complicated by the sub‐humid climate and salinity of underlying mining material. In 2012, Syncrude Canada Ltd. completed the construction of the Sandhill Fen Watershed (SFW), a 52‐ha upland‐wetland system to evaluate wetland reclamation strategies on soft tailings. SFW includes an active pumping system, upland hummocks, a fen wetland and underdrains. To evaluate the influence of management practices on the hydrology of the system, this study reports the water balance from January 2013 to December 2014, the first 2 years after commissioning. A semi‐distributed approach was taken to examine the fluxes and stores of water in uplands and lowlands. Natural and artificial inputs and outputs were measured using a series of precipitation gauges and pumps, and evapotranspiration was quantified using three eddy covariance towers. A series of near surface wells recorded water table position. Both 2013 and 2014 were normal rainfall years, with 2013 having more and 2014 less snow than normal. In 2013, inflow/outflow from pumping was the predominant hydrological fluxes, resulting in considerable variability in water table position and storage changes throughout the summer. In 2014, the artificial addition of water was negligible, yet the water table remained near the surface in lowland locations, suggesting that wetland conditions could be maintained under current conditions. Evapotranspiration rates between uplands and lowlands were similar between years and sites, ranging from 2.2 ± 1.8 to 2.5 ± 1.2 mm/day and were largely controlled by climate. These rates were less than nearby older upland systems, suggesting that water balance partitioning will change as vegetation develops. Comparison between years and with natural systems provides insight on how management practices influence hydrologic dynamics and the overall water balance of the SFW. Copyright © 2016 John Wiley & Sons, Ltd.  相似文献