Use of Sonication for Enhanced Sampling of Attached Microbes from Groundwater Systems     

Murray Close  Phil Abraham  Judith Webber  Eliza Cowey  Bronwyn Humphries  Graham Fenwick  Simon Howard  Kimberly Huynh  Travis Grace  Pierre-Yves Dupont  Louise Weaver 《Ground water》2020,58(6):901-912

The vast majority of microorganisms in aquifers live as biofilms on sediment surfaces, which presents significant challenges for sampling as only the suspended microbes will be sampled through normal pumping. The use of a down-well low frequency sonicator has been suggested as a method of detaching microbes from the biofilm and allowing rapid sampling of this community. We developed a portable, easy to use, low-frequency electric sonicator and evaluated its performance for a range of well depths (tested up to 42 m below ground level) and casing types. Three sonicators were characterized in laboratory experiments using a 1 m long tank filled with pea gravel. These included a commercially available pneumatic sonicator, a rotating flexible shaft sonicator, and the prototype electric sonicator. The electric sonicator detached between 56 and 74% of microbes grown on gravel-containing biobags at distances ranging between 2 and 50 cm from the sonicator. The field testing comprises of a total of 55 sampling events from 48 wells located in 4 regions throughout New Zealand. Pre- and post-sonication samples showed an average 33 times increase in bacterial counts. Microbial sequence data showed that the same classes are present in pre- and post-sonicated samples and only slight differences were seen in the proportions present. The sampling process was rapid and the significant increases in bacterial counts mean that microbial samples can be quickly obtained from wells, which permits more detailed analysis than previously possible.  相似文献   

Chemical Procedures for Rhenium Extraction from Geological Samples: Optimising the Anion Resin Bead Clean‐up Step     

Gang Yang  Aaron Zimmerman  Nicole C. Hurtig  Svetoslav V. Georgiev  Vineet Goswami  Judith L. Hannah  Holly J. Stein 《Geostandards and Geoanalytical Research》2020,44(2):231-242

Rhenium–osmium geochronometry for samples with low Re and complex matrices requires improved Re extraction methods. Here, we investigate plausible controls on efficiency and efficacy of Re extraction during our anion resin bead purification. Four different protocols are compared, each isolating a single variable to test. Rhenium concentrations for solutions at each step of each protocol document differences in chemical recovery/yield. The negative‐thermal ionisation mass spectrometry (N‐TIMS) signal intensity serves as a proxy for Re yield and purity. These data document correlations between the N‐TIMS signal intensity and (a) the duration of anion resin bead conditioning prior to loading with Re‐bearing solution, and (b) both duration and strength of nitric acid used during rinsing of the Re‐loaded anion resin bead. The optimal protocol improved Re signal intensity around fourteen times compared with our current Re extraction protocol, an aggregate of 2.4 times improvement in chemical recovery (yield) and 5.8 times improvement in emission efficiency (purity). Repeated N‐TIMS isotopic measurements on our in‐house Re standard solution (1407) verify that our optimal protocol‐3 does not fractionate Re isotopes. The improved anion resin bead method considerably lowers the Re detection limit and allows Re‐Os isotopic analysis of picogram‐level Re hosted in geological samples with complex matrices.  相似文献   

Microbially influenced formation of Mg‐calcite and Ca‐dolomite in the presence of exopolymeric substances produced by sulphate‐reducing bacteria     

Tomaso R. R. Bontognali  Judith A. McKenzie  Rolf J. Warthmann  Crisogono Vasconcelos 《地学学报》2014,26(1):72-77

Some species of sulphate‐reducing bacteria (SRB) are known to mediate the formation of dolomite and Mg‐calcite. However, their exact role in the mineralization process remains elusive. Here, we present the result of a laboratory experiment that was designed to test whether formation of carbonate minerals by SRB can occur in the absence of living cells, through passive mineralization of their exopolymeric substances (EPS). SRB capable of mediating dolomite were cultivated in the laboratory, allowing them to secrete EPS. Microbial activity within the cultures was subsequently inhibited with antibiotics. Only after this step, Ca²⁺ and Mg²⁺ were added to the solution and carbonate minerals could form. Mg‐calcite and disordered Ca‐dolomite precipitated in association with EPS. The mol.% of Mg²⁺ in the crystals increased with longer incubation times. This result demonstrates that organic compounds produced by SRB can mediate the formation of Ca‐Mg carbonates in the absence of an active metabolism.  相似文献   

A New Generation Earth Mantle Model from Global Adjoint Tomography     

Youyi Ruan  Wenjie Lei  Matthieu Lefebvre  Ryan Modrak  James Smith  Ridvan Orsvuran  Ebru Bozdag  Judith Hill  Norbert Podhorszki  Dave Pugmire  Jeroen Tromp 《《地质学报》英文版》2018,92(Z1):140-140

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Characterization of fluid inclusions from mineralized pegmatites of the Damara Belt,Namibia: insight into late-stage fluid evolution and implications for mineralization     

Ashworth  Luisa  Kinnaird  Judith Ann  Nex  Paul Andrew Martin  Erasmus  Rudolph Marthinus  Przybyłowicz  Wojciech Józef 《Mineralogy and Petrology》2018,112(6):753-765

Mineralogy and Petrology - Mineralized NYF and LCT pegmatites occur throughout the northeast-trending Neoproterozoic Damara Belt, Namibia. Mineralization in the pegmatites varies geographically,...  相似文献   

What does the occurrence of Sporormiella (Preussia) spores mean in Australian fossil sequences?          下载免费PDF全文

John Dodson  Judith H. Field 《第四纪科学杂志》2018,33(4):380-392

Understanding the loss of the final few species of Australian megafauna is beset by a paucity of data on human arrival, well‐provenanced megafauna, human/megafauna population range and distribution (coexistence and interaction), and the range, scale and impact of environmental changes spanning the human–megafauna period. To overcome these shortcomings, the occurrence and decline of coprophilous fungal spores of Sporormiella in sediments have been used as a proxy for extinct megaherbivores. The Sporormiella evidence is presented as the key indicator of extinction timing and these reports are often from locations where there is no known archaeological record or megafauna remains. However, interpreting fungal spore occurrence is not straightforward, as demonstrated by studies investigating taphonomy, taxonomy and the types of animal dung where Sporormiella occurs. No detailed studies on these problems exist for Australia and no evidence supporting the use of Sporormiella as a valid proxy has been reported. Here we examine the occurrence of Sporormiella spores from Cuddie Springs in south‐eastern Australia. Despite a well‐preserved suite of megafauna fossils, Sporormiella occurrence is sporadic and frequencies are low. We conclude that using Sporormiella alone as an indicator for the presence of megafauna is premature for the Australian context.  相似文献   

Fabric evolution and crack propagation in salt during consolidation and cyclic compression tests     

Shen  Xianda  Ding  Jihui  Lordkipanidze  Ilia  Arson  Chloé  Chester  Judith S.  Chester  Frederick M. 《Acta Geotechnica》2021,16(6):1679-1697

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Catchments of German surface water bodies     

Andreas Gericke  Judith Mahnkopf  Markus Venohr 《水文研究》2021,35(7):e14272

The European Water Framework Directive demands to assess and report the chemical and ecological status of water bodies (WB). Linking their status to drivers and pressures and deriving suitable mitigation measures require knowledge of the shape and area of WB catchments. We derived a network of 26 570 WB catchments in Germany using the hydrologically-defined drainage basins of the German federal states. We established a network of 338 149 drainage basins. This network underwent plausibility checks and a validation with the catchment areas of 348 monitoring stations across Germany. To this network, we assigned the longest intersecting or the next downstream WB code. To account for geometric inaccuracies we revised spurious intersections resulting in splittings and cycles in the WB network. As WB may be ecologically but not hydrologically well defined, we split them at confluences and intersections. The network of drainage basins matched the monitoring stations with a Nash-Sutcliffe efficiency of 1.00. The final WB network contained 11 005 out of the 11 586 original WBs longer than 1 m. The corresponding local catchment areas range from <<0.0001 to 446 km², with a median of 10 km². The dataset combines the requirements of hydrological and ecological modelling applications at basin or national scales with the needs of the EU reporting which can foster their acceptance by state authorities and river-basin management.  相似文献   

Benthic Community Structure and Sediment Properties in Barnegat Bay,New Jersey,Before and After Hurricane Sandy     

Gary L. Taghon  Patricia A. Ramey  Charlotte M. Fuller  Rosemarie F. Petrecca  Judith P. Grassle 《Estuaries and Coasts》2017,40(1):160-172

Hurricane Sandy was an extraordinarily large storm that affected most of the eastern coast of the USA in October 2012. To assess this storm’s impact, the benthic invertebrate community structure and sediment properties were compared in samples collected 3.5 months prior to (July 2012) and 8 months after (July 2013) the hurricane at 97 locations in Barnegat Bay, New Jersey, USA. Barnegat Bay is a shallow back-barrier estuary just north of where Sandy made landfall. For all locations taken together, sediment total nitrogen concentration was lower afterwards, while total organic carbon and total phosphorus concentrations were similar. Sediment median particle size was the same before and after, but the sediment was better sorted after the storm. There were no differences in total abundance of invertebrates, species richness, species diversity, or the abundance of polychaetes, bivalves, or gastropods. Malacostracan crustaceans were more abundant after Sandy (average 82 (0.04 m²)^?1) than they were before (average 64), due almost entirely to increased abundance of ampeliscid amphipods, which showed a shift toward smaller sizes in 2013. Annelids in the order Clitellata were on average less abundant after the hurricane (17) than before (53). The apparent minimal effect of Sandy on the benthic community in Barnegat Bay was probably because the passage of the hurricane had no detectable effects on salinity or dissolved oxygen concentrations throughout the bay.  相似文献   

Elastic Anisotropy of a Metamorphic Rock Sample of the Canadian Shield in Northeastern Alberta     

Judith Chan  Douglas R. Schmitt 《Rock Mechanics and Rock Engineering》2015,48(4):1369-1385

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