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A better understanding of bacterioplankton community shifts following change in marine environments is critical to predict the marine ecosystem function. In order to get a snapshot of the microbial taxonomy profiling of a wide range marine area, a quick, convenient and low cost method would be favorable. In this study, we developed a 16S rRNA gene-based microarray using ARB software, which contained 447 probes targeting 160 families of marine bacteria. The specificity, sensitivity and quantitative capability of this microarray were assessed by single cloned16S rRNA genes. The reliability of this microarray was tested by eight environmental samples. The results showed that the microarray was specific, only 1.16% false results were detected in five single-clone hybridization tests. The microarray could detect DNA samples as few as 1 ng/μL and the signal intensity could reflect the relative abundance of the bacteria in the range of 1 ng/μL to 100 ng/μL of DNA concentration. Hybridization with environmental samples showed that it can discriminate bacterioplankton communities by sites and time. High throughput sequencing results from the eight samples confirmed the hybridization results. It indicated that this developed microarray could be used as a convenient tool to monitor the bacterioplankton community in marine environment. 相似文献
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渤海湾表层海水中浮游细菌群落随离岸距离的分布特征及其影响因素 总被引：1，自引：0，他引：1
为研究渤海湾近岸污染对远近岸海域微生态的影响，利用高通量测序技术，对渤海湾不同离岸距离的6个站位采集表层海水，进行浮游细菌群落结构分析，结合环境、空间因素探究影响其变化的主要因素。结果表明:研究区域存在环境因子的梯度变化，如氮营养盐在近岸高于远岸；细菌α-多样性在不同站位间差异不显著，但仍显示在近岸相对较高；细菌群落结构随离岸距离变化显著，γ-变形菌和拟杆菌在近岸显著富集，且与氮营养盐的含量有关；蓝细菌在远岸显著富集，且与氨氮、透明度、电导率有关；邻体矩阵主坐标单独解释部分对群落结构变异的贡献率最大(38.1%)，说明可能存在尚未测量但具有空间结构的环境变量影响群落空间分布；结合功能预测的结果推测近岸区域的富营养与烃类污染等可能影响群落变化。本文从环境和空间影响两方面探讨了渤海湾不同离岸距离的海域浮游细菌群落结构变化，为研究渤海湾海洋生态及环境保护提供一定的参考。 相似文献
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