Investigating the seasonal vertical structure of phytoplankton in shelf seas |
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| Institution: | 1. Department of Geological and Environmental Sciences, Stanford University, Stanford, CA 94305, United States;2. Institute of Marine Sciences, University of California Santa Cruz, Santa Cruz, CA 95064, United States;3. College of Earth, Ocean and Atmospheric Sciences, Oregon State University, Corvallis, OR 97331, United States;4. Rosenstiel School of Marine and Atmospheric Science, University of Miami, Miami, FL 33149, United States |
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| Abstract: | A 1-dimensional (vertical) physical-biological coupled model is presented. The model is designed for investigations into the link between the vertical turbulent structure of a coastal or shelf sea water column, and the primary production. The physical model employs a turbulence closure scheme to provide the link between local vertical stability (driven by seasonal solar heating) and the vertical turbulent mixing (driven by tidal currents and surface wind stress). The biological component of the model is a simple cell quota, threshold limitation model, with either 1 or 2 taxa/species of phytoplankton growing in response to light and dissolved inorganic nitrogen. The user has control over all model physical and biological driving parameters. Graphical screen output, suitable for basic visualisation and teaching purposes, is generated as the model operates, and more detailed data are written to files for later analysis.In order to demonstrate the model's use in simple hypothesis investigation, an example of the model operation is illustrated. This focuses on the effect that the springs-neaps tidal cycle has on the production within the summer sub-surface biomass maximum, illustrating the fortnightly input of new nitrogen into the thermocline and the subsequent new production. |
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