| 棘皮动物育种数据管理与分析平台的开发及应用 |
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| 引用本文： | 李彬,王卫军,王扬帆,孙国华,徐晓辉,冯艳微,李赞,崔翠菊,杨建敏.棘皮动物育种数据管理与分析平台的开发及应用[J].海洋与湖沼,2022,53(5):1225-1233. |
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| 作者姓名： | 李彬 王卫军 王扬帆 孙国华 徐晓辉 冯艳微 李赞 崔翠菊 杨建敏 |
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| 作者单位： | 鲁东大学农学院 山东烟台 264025;烟台海育海洋科技有限公司 山东烟台 264004;中国海洋大学 山东青岛 266003;鲁东大学农学院 山东烟台 264025;烟台海育海洋科技有限公司 山东烟台 264004;山东华春渔业有限公司 山东东营 257200 |
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| 基金项目： | 国家重点研发计划,2018YFD0901601号,2018YFD0901602号;山东省泰山产业领军人才,TSCY20190114号;山东省现代农业产业技术体系刺参创新团队,SDAIT-22-02号。 |
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| 摘 要： | 以刺参为代表的高价值棘皮动物在我国的养殖规模不断扩大,市场价值越来越高,但有关棘皮动物育种数据管理与分析的系统并未开发。本平台是以ASReml软件为遗传评估核心,使用Mysql数据库和java、R语言,利用maven、myeclipse2017工具开发的一套基于B/S框架,在Linux环境下运行的育种数据管理与分析系统。平台包含6大功能模块:系统管理、种质信息、表型数据库、表型数据分析、基因组数据库和基因组数据分析等。能实现棘皮动物表型数据、系谱数据和基因组数据的管理、育种值分析、遗传力估算、近交和亲缘系数计算、遗传进展计算和选种配种方案制定。运用该平台对刺参育种模拟数据进行管理、分析与应用,利用模拟表型数据和基因组数据对刺参的棘刺、体重进行了遗传力分析和育种值计算,并提出选种配种方案。该平台的推广和应用将提升棘皮动物育种效率,对我国棘皮动物育种工作的发展具有重要的促进作用。
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| 关 键 词： | 棘皮动物 育种数据 信息管理 遗传参数 平台开发 |
| 收稿时间： | 2021/12/11 0:00:00 |
| 修稿时间： | 2021/12/30 0:00:00 |
DEVELOPMENT AND APPLICATION OF DATA MANAGEMENT AND ANALYSIS PLATFORM FOR ECHINODERM BREEDING |
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| LI Bin,WANG Wei-Jun,WANG Yang-Fan,SUN Guo-Hu,XU Xiao-Hui,FENG Yan-Wei,LI Zan,CUI Cui-Ju,YANG Jian-Min.DEVELOPMENT AND APPLICATION OF DATA MANAGEMENT AND ANALYSIS PLATFORM FOR ECHINODERM BREEDING[J].Oceanologia Et Limnologia Sinica,2022,53(5):1225-1233. |
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| Authors: | LI Bin WANG Wei-Jun WANG Yang-Fan SUN Guo-Hu XU Xiao-Hui FENG Yan-Wei LI Zan CUI Cui-Ju YANG Jian-Min |
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| Institution: | School of Agriculture, Ludong University, Yantai 264025, China;Yantai Haiyu Marine Science and Technology Co., Ltd., Yantai 264004, China;Ocean University of China, Qingdao 266003, China;School of Agriculture, Ludong University, Yantai 264025, China;Yantai Haiyu Marine Science and Technology Co., Ltd., Yantai 264004, China;Shandong Huachun Fisheries Co., Ltd., Dongying 257200, China |
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| Abstract: | Echinoderms,represented especially by sea cucumbers as high-value aquatic animals,of which the farming area and profuction has been increasing in scale in China.However,the system for data management and analysis of echinoderms breeding remains blank.ASReml software was used to evaluate genetic parameters.MySQL database and java,R language were used under Linux environment,and the maven and myeclipse2017 tools were used to develop a set of breeding data management and analysis system in Browser/Server framework.The platform contains 6 main functional modules:system management,germplasm information,phenotype database,phenotype data analysis,genomic data,and genomic data analysis.With the platform,we could manage echinoderms phenotype data,pedigree data,and genome data;analyze breeding values;calculate heritability,inbreeding and kinship coefficients;and recommend schedule of genetic breeding mating.The platform was tested with simulated data of sea cucumber,on which heritability was analyzed,and expected breeding value (EBV) and genomic expected breeding value (GEBV) were calculated with simulated phenotype and genome data.Mating schedules were made based on total EBVs and kinship coefficients.The application of the platform will improve the technical level of echinoderms breeding and promote the development of echinoderms breeding in China. |
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| Keywords: | echinoderm breeding data information management genetic parameters platform development |
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