首页 | 本学科首页   官方微博 | 高级检索  
相似文献
 共查询到20条相似文献，搜索用时 953 毫秒
1.
Using shotgun sequencing data, the complete sequences of chloroplast 16S rRNA and tufA genes were acquired from native specimens of Bryopsis hypnoides (Qingdao, China). There are two group I introns in the 16S rRNA gene, which is structurally similar to that of Caulerpa sertularioides (Bryopsidales, Chlorophyta). The chloroplast-encoded tufA gene sequence is 1 230 bp long, very AT-rich (61.5%), and is similar to previously published 16S rRNA sequences of bryopsidinean algae. Phylogenetic analyses based on chloroplast 16S rRNA and tufA gene sequence data support previous hypotheses that the Bryopsidineae, Halimedineae, and Ostreobidineae are three distinct lineages. These results also confirmed the exclusion of Avrainvillea from the family Udoteaceae. Phylogenetic analyses inferred that the genus Bryopsis as sister to Derbesia; however, this clade lacked robust nodal support. Moreover, the phylogenetic tree inferred from rbcL GenBank sequences, combined with the geographical distributions of Bryopsis species, identified a strongly supportive clade for three differently distributed Asian Bryopsis species. The preliminary results suggesting that these organisms are of distinct regional endemism.  相似文献   

2.
The decomposition of a large amount of unexploited macroalgal resource along the coast of China often results in heavy environmental pollution. In order to pave a way of using macroalgae as the dietary ingredient of rabbitfish Siganus canaliculatus, one of a few farmed herbivorous marine teleosts in China, its preference （feeding selectivity） for different macroalgae was determined in this study. Seven seaweed species abundantly inhabiting the coast of east Guangdong Province were exposed simultaneously to rab-bitfish juveniles in laboratory （multiple-choice feeding） with their content and absolute intake assayed. It was found that the most preferred algae were Ulva prolifera, Gracilaria lemaneiformis and Chaetomorpha linum, less preferred algae were U. pertusa and Porphyra haitanensis, and least preferred ones were Sargassum fusiforme and Corallina sessilis. Such an order did not change when one to four relatively preferred seaweeds were removed. The preferred seaweeds were richer in protein and soluble sugar thus higher in energy than the least preferred. In addition, this fish was found to favor filamentous and flat algae rather than calcified ones. Ac-cordingly, the richness of nutrients and morphological characteristics determined the preference of S. canaliculatus for tested macro-algae.  相似文献   

3.
The systematic classification of the Eucheumatoideae is difficult because of their variable morphology and interpretation of reproductive structures. Kappaphycus and Eucheuma specimens cultivated on the Hainan and Fujian coast of China were introduced from Vietnam, the Philippines and Indonesia. Combined with morphological characteristics, all Kappaphycus and Eucheuma cultivated strains were identified by internal transcribed spacer (ITS) sequences. The phylogenetic tree was constructed using neighbor-joining and maximum likelihood methods. The results indicate that different ITS sequence lengths occurred in the different genera and species. An obvious difference in morphology could be found in the protuberance shape between Kappaphycus and Eucheuma. The protuberance in Eucheuma was thorn-like and in Kappaphycus was wartlike or papillate. Their ITS sequence lengths differed significantly in nucleotide variation rates up to 58.55%-63.90%. All nucleotide variations occurred in the ITS1 and ITS2 regions except for five nucleotide transversions in the 5.8S rDNA region. In addition, the difference was at the branches among congeneric species. Kappaphycus sp. had branches with small buds, while K. alvarezii did not have such a feature. The nucleotide variation rates varied from 7.02% to 7.48% among species; within the same species of the clades it was <1.20%. Eucheumatoideae algae cultivated in China consisted of three clades, K. alvarezii, Kappaphycus sp., and E. denticulatum. The results indicate that ITS sequence analysis was an effective way for identification of interspecies and intraspecies phylogenetic relationships and might provide a clue for molecular identification of algal Eucheumatoideae.  相似文献   

4.
A total of 142 specimens of Ceramiales(Rhodophyta) were collected each month from October 2011 to November 2012 in the intertidal zone of the northwestern Yellow Sea. These specimens covered 21 species,14 genera,and four families. Cluster analyses show that the specimens had a high diversity for the three DNA markers,namely,partial large subunit r RNA gene(LSU),universal plastid amplicon(UPA),and partial mitochondrial cytochrome c oxidase subunit I gene(COI). No intraspecific divergence was found in our collection for these markers,except for a 1–3 bp divergence in the COI of Ceramium kondoi,Symphyocladia latiuscula,and Neosiphonia japonica. Because short DNA markers were used,the phylogenetic relationships of higher taxonomic levels were hard to evaluate with poor branch support. More than half species of our collection failed to find their matched sequences owing to shortage information of DNA barcodes for macroalgae in Gen Bank or BOLD(Barcode of Life Data) Systems. Three specimens were presumed as H eterosiphonia crispella by cluster analyses on DNA barcodes assisted by morphological identification,which was the first record in the investigated area,implying that it might be a cryptic or invasive species in the coastal area of northwestern Yellow Sea. In the neighbor-joining trees of all three DNA markers,H eterosiphonia japonica converged with D asya spp. and was distant from the other Heterosiphonia spp.,implying that H. japonica had affinities to the genus Dasya. The LSU and UPA markers amplified and sequenced easier than the COI marker across the Ceramiales species,but the COI had a higher ability to discriminate between species.  相似文献   

5.
An assessment with assistance of DNA barcoding was conducted on green macroalgae in coastal zone around Qingdao,China, during the period of April-December, 2011. Three markers were applied in molecular discrimination, including the plastidelongation factor tufA gene, the internal transcribed spacer （ITS） region of the ribosomal cistron and rubisco large subunit gene 3＇regions （rbcL-3P）. DNA barcoding discriminated 8 species, excluding species of genus Cladophora and Bryopsis due to failures inamplification. We ascertained and corrected 4 species identified by morphological methods for effectively assisting the classification.The gene tufA presented more advantages as an appropriate DNA marker with the strongest amplification success rate and speciesdiscrimination power than the other two genes. The poorest sequencing success largely handicapped the application of ITS. Samplesidentified by tufA and rbcL as Ulvaflexuosa were clustered into the clade of U. prolifera by ITS in the neighbor-joining tree. Confu-sion with discrimination of the complex of U. linza, U. procera and U. prolifera （as the LPP complex） still existed for the three DNAmarkers. Based on our results, rbcL is recommended as a preferred marker for assisting tufA to discriminate green macroalgae. Indistinguishing green-tide-forming Ulva species, the free-floating sample collected from the green tide in 2011 was proved to be iden-tical with U. prolifera in Yellow Sea for ITS and rbcL genes. This study presents a preliminary survey of green macroalgae distrib-uted in the coastal area around Qingdao, and proves that DNA barcoding is a powerful tool for taxonomy of green macroalgae.  相似文献   

6.
To explore the impact of environmental variables on macroalgal communities, their temporal and spatial distributions were examined along the Yantai coast, China between April 2010 and March 2011. Macroalgae sampling was conducted monthly at four sites along the coast： Jiahe River estuary, Zhifu Island, Fisherman＇s Wharf, and Yangma Island. The species composition and abundance, and their relationship with environmental variables were assessed. Along the Yantai coast, 35 macroalgae species were identified, including 24 Rhodophyta spp., 7 Chlorophyta, and 4 Phaeophyta spp. Highest species numbers were recorded in the summer at all sampling sites, except in the Jiahe River estuary. Macroalgae biomass was the greatest in the summer. Year-round, the highest species number and dry biomass recorded at Fisherman＇s Wharf and Yangma Island was attributed to the substrate type. In summer, Ulva pertusa Kjellman was the dominant species identified along the Yantai coast, which indicates a risk ofmacroalgae blooms. Our results show that seawater temperature and nutrients appear to significantly affect the temporal and spatial patterns of macroalgal abundance along the Yantai coast. The effects of environmental variables on the macroalgae on the Yantai coast need further study.  相似文献   

7.
The 18S ribosomal DNA gene （18S rDNA） sequences （approxtmately 1300 bp in length） were amplified from the DNA extracted from the free-living marine nematodes collected from the inter-tidal sediment of Qingdao coast in bulk with nematode specific primers. The PCR products were cloned, re-amplified, digested with Rsa I and Hin61 restriction endonucleases and separated in agarose gel. Among 17 restriction fragment length types, types 1, 2 and 6 covered 61.2%, 14.4% and 9.3% of the clones analyzed, respectively, while the remaining 14 only covered 21 clones, which accounted for 15.1% of the total. Twenty-four representative clones were sequenced and phylogenetically analyzed by referring to those currently available in RDP and GenBank databases. Although it was hard to assign these sequences to known species or genera due to the lack of the 18S rDNA sequence data of known marine free-living nematodes, the obtained sequences were assigned to the nematodes of Adenophorea. Among them, twelve sequences were close to Pontonema vulgate and Adoncholaimus sp., four to Daptonema procerus and two （identical） to Enoplus brews. Our results showed that free-living marine nematode diversities could be determined by PCR retrieving and analysis of the 18S rDNA sequences and an 18S rDNA sequence could be assigned to a species or a genus only if the 18S rDNA sequences of the free-living marine nematodes were accumulated to some extent.  相似文献   

8.
Acila divaricata （Hinds, 1843） and A. mirabilis （Adams and Reeve, 1850） are common benthic bivalves in China. A number of researchers have proposed that the latter species is a junior synonym of the former species. Because of morphological similarities, it is difficult to distinguish these two species based on visual examination only. For better understanding of their taxon-omy, the mitochondrial CO1 gene fragments of five individuals of A. divaricata from the East China Sea and six individuals of A. mirabilis from the Yellow Sea were sequenced in this study. The phylogenetic relationships of the obtained COI sequences, together with nineteen sequences of three species of the genus Nucula, were analyzed. The pairwise intra- and inter-specific distances for the CO1 sequences ranged from 0.002 to 0.017 and from 0.128 to 0.134, respectively, and no overlap was found. Phylogenetically, A. divaricata and A. mirabilis form distinct clades and cluster into a sister to all other Nucula species. The results indicated that A. di-varicata and A. mirabilis are two distinct species. The differences in the morphology and distribution between the two species were briefly discussed.  相似文献   

9.
The genus Cylindrotheca consists of a small group of marine diatoms with a few species described. Eleven isolates of diatoms identified as Cylindrotheca closterium morphologically were obtained from Jiaozhou Bay with their nuclear-encoded small-subunit ribosomal RNA （SSU rDNA） and chloroplast-encoded rbcL gene sequences determined in this study. Interestingly, very high sequence divergences of SSU rDNA and rbcL gene were found among these isolates, and numerous nucleotide variation of rbcL gene caused relatively few variation of deduced amino acid sequence. Phylogenetic analyses based on SSU rDNA and rbcL gene, respectively, grouped the isolates into 6 clades. Phylogenetic tree of SSU rDNA placed all the Cylindrotheca isolates together, separating them into two lineages clearly. LineageⅠ was composed of the eleven C. closterium isolates obtained in this study together with another C. closterium isolate, but some clades were not well supported. LineageⅠwas contained two C. closterium isolates and one C. fusiformis isolate. Phylogenetic analysis of rbcL gene also separated the Cylindrotheca isolates into two well-defined lineages. The eleven C. closterium isolates formed a lineage and all clades were supported strongly. Statistical comparisons of SSU rDNA indicated that the average distance within lineageⅠwas significantly higher than that of other microalgae species （P 〈0.01）. These results suggested the existence of cryptic species within C. closterium.  相似文献   

10.
Photosynthetic species belonging to Symbiodiniaceae play important ecological roles in coral reef ecosystems. Nine phylogenetically supported Symbiodiniaceae clades(each containing multiple genetically distinct molecular types) have been detected in reef-associated animals and in seawater or sediments near coral reef areas. Although major advances in research on Symbiodiniaceae diversity have been made, information on the global-scale diversity and distribution characteristics of Symbiodiniaceae clades/types is still limited or must be expanded because most studies on Symbiodiniaceae have mainly focused on a limited number of hosts associated with Symbiodiniaceae or coral reef areas. Here, the diversity and distribution characteristics of Symbiodiniaceae data derived from reef-associated animals and seawater or sediments near coral reef areas were analyzed using 3899 qualified Symbiodiniaceae internal transcribed spacer 2(ITS2) sequences retrieved from the GenBank database in May 2017. These sequences were annotated as Symbiodiniaceae ITS2 types via sequence alignment against database of Symbiodiniaceae ITS2 types. Results showed that photosynthetic Symbiodiniaceae ITS2 sequences could be annotated as 119 Symbiodiniaceae ITS2 types within nine clades(A–I), and Symbiodiniaceae ITS2 types mainly inhabited coral reefs between 30?N and 30?S. Symbiodiniaceae ITS2 types could be associated with multiple host taxa. Interestingly, these results implied that the distribution of Symbiodiniaceae ITS2 types was distinct in the Atlantic Ocean, the Red Sea, the Mediterranean Sea, and the Indo-Pacific Ocean. Although future field research should be performed to verify our results, this study provided a broad perspective of the diversity of Symbiodiniaceae clades/types on a global scale.  相似文献   

11.
Genus Nassarius contains many subgenera, such as Zeuxis, Telasco, Niotha, Varicinassa, Plicarcularia, Nassarius s. str. and Reticunassa. On the basis of morphological characteristics of the shell and radula and sequences of mitochondrial cytochrome oxidase subunit I (COI) and 16S rRNA genes, Nassarius specimens collected from the South China Sea were identified and phylogenetically analyzed. Although Nassarius sp. and Nassarius (Varicinassa) variciferus were morphologically different in their shells, few variations were found among their radular teeth and sequences of mtCOI and mt16S RNA genes. Therefore, Nassarius sp. should be classified as N. (Varicinassa) variciferus. Nassarius (Zeuxis) sp. has only a subtle difference from Nassarius (Zeuxis) algidus on the shell, but it shows obvious differences in radular teeth and DNA sequence, indicating that they are two distinct species. Sequence divergence of mtCOI and mt16S RNA genes within Nassarius species was much lower than that between species, suggesting that these two genes are suitable for Nassarius species identification. Phylogenetic analysis (neighbor-joining and maximum parsimony) based on mtCOI and mt16S rRNA genes revealed the presence of two groups in genus Nassarius and a closest relationship between subgenera Zeuxis and Telasco. Species of subgenus Plicarcularia did not form a single clade. The molecular phylogeny was not congruent with the previous morphological phylogeny. The subgeneric divisions of genus Nassarius appear to be uncertain and unreliable.  相似文献   

12.
  相似文献   

13.
Harmful algal blooms(HABs) have become a recurring problem, posing severe impacts on marine ecosystems, fisheries, mariculture industry, and even public health. In this study, the geographic information system(GIS) was utilized to determine spatial and temporal characteristics of HAB events in the coastal waters of Guangdong from 1980–2016. We analyzed distribution patterns and characteristics of HABs by dividing the coast of Guangdong into well-known bays, estuary and coastal waters. Results showed that there were a total of 337 HABs recorded in Guangdong coastal waters. Spatial and temporal distributions varied among dif ferent regions. Most HABs occurred in the Mirs Bay, followed by the west coast of Daya Bay, while a few occurred in the west and east coasts of Guangdong but with an increasing trend in the past two decades. HABs occurred mostly in warmer months of March to May in the western coast of Guangdong, March and April in Mirs Bay, April in Zhujiang(Pearl) River estuary, November in eastern coast of Guangdong. For Daya Bay, most HABs were reported between March and September.The most frequently occurring HABs species were Noctiluca scintillans, P haeocystis globosa, Skeletonema costatum and Scrippsiella trochoidea, occurring mostly in Mirs Bay, western Guangdong coast area, eastern Guangdong coast area and Zhujiang River estuary and Daya Bay, respectively. Ichthyotoxic blooms were more common than toxic blooms, and Heterosigma akashiwo, Chattonella marina, Karenia mikimotoi and P haeocystis globosa were the most common ichthyotoxic species. Our results provide baseline information useful for policy making and management of HABs in the region.  相似文献   

14.
Elucidating woody community diversity and structure change along environmental gradients is still a central issue of tropical forest ecology. We have evaluated changes in alpha and beta diversity, community composition and structure of woody communities along an elevational gradient in Dwarf Cloud Forests, Southeast Brazil. We selected five areas along an elevational gradient(1,300-1,600 m asl), and randomly allocated 10 plots(10 m × 20 m) in each area in the Ibitipoca State Park(ISP), Serra da Mantiqueira, southeastern Brazil. All woody species(diameter at breast height ≥ 5.0 cm) were collected for taxonomic identification. Thus, we analysed the woody communities based on a phytosociological approach. Overall, 147 species and 37 families were recorded, distributed in 2,303 individuals. No differences in the species richness pattern were observed between areas using the rarefaction and extrapolation curves. Significant differences in species composition and structure between areas were observed. The high beta diversity observed, corroborated by the Jaccard coefficient, increases with decreasing altitude. Our results showed that woody communities in the studied Dwarf Cloud Forests have a higher diversity and structural variability along elevational gradient.  相似文献   

15.
The production of dimethylsulfoniopropionate (DMSP) and its cleavage products (DMS) are well studied in phytoplankton worldwide. However, less is known about their sources, distributions, and impacts in the coast of China. We examined the production of DMSP and DMS in Phaeocystis globosa Scherffel and other benthic macroalgae from the South China coast in relation to environmental conditions. P. globosa was a harmful marine microalgal species and its bloom took place in the eutrophic waters along the South China Sea frequently. It also produced high content of DMSP at different growth stages, with the highest concentration usually observed in the stationary period. Moreover, the production of DMSP in P. globosa was significantly affected by salinity and temperature with the highest contents associated with high salinity (e.g. 40) and low temperature (e.g. 20°C). In field benthic macroalgae, there was also a marked difference in the DMSP of various species or different samples of the same species. Chlorophyll a contents were also determined for each macroalgal species. The highest chlorophyll a (238.7 ng/g fresh weight) was recorded in Chlorophyta Ulva lactuca at Guishan Island (Zhuhai), while the lowest value (1.5 ng/g fresh weight) was found in Rhodophyta Gracilaria tenuistipitata in Zhanjiang. Further correlation analysis indicated that there was no significant relationship between the content of DMSP and chl-a in macroalgae samples (P > 0.05). All the results suggested that the production of DMSP in marine algae was not only species- and stage-related, but also greatly affected by various environmental factors.  相似文献   

16.
Butterflies are widely studied due to their key ecosystem functions.For this reason,they are used in ecosystem assessment,formulating conservation plans and in raising the environmental awareness.Quantification of different factors affecting diversity of butterflies is important for their effective conservation.In this study,we investigated abiotic and biotic factors affecting species richness and community composition of butterflies along an elevational gradient in Manang region,central Nepal.We also tested if butterfly species follow the Bergmann’s rule.A total of 57 butterfly species belonging to 39 genera and 8 families were recorded in the study area.Out of a total of 127 plant species identified in the study region,only 67 plant species were visited by butterflies as nectar sources.Species richness of butterflies increased with increasing elevation.Species richness was significantly higher in places with shrubs compared to other places and also in autumn than in summer.Species richness of butterflies also depended on composition of plant species occurring at the localities.Butterfly species composition varied among sampling localities.It was also determined by habitat type,elevation,sampling time,plant species and interactions of elevation×time.The relationship between butterfly size and elevation was in the opposite direction than expected according to the Bergmann’s rule.In conclusion,protection of butterfly diversity can only be achieved by protecting different habitats across the diverse physiography of the region and different plant species,in particular herbs and shrubs.Our results do not support the Bergmann’s rule for butterflies along an elevational gradient in our region.  相似文献   

17.
Invasive plant species are exerting a serious threat to biological diversity in many regions of the world. To understand plant invasions this study aims to test which of the two plant invasiveness hypotheses; ‘low native diversity' vs. ‘high native diversity', is supported by the regional distribution patterns of invasive plant species in the Himalayas,Nepal. This study is based on data retrieved from published literatures and herbarium specimens. The relationship between invasive plant species distribution patterns and that of native plant species is elucidated by scatter plots, as well as by generalized linear models. The native plant species and invasive plant species have similar distribution patterns and the maximum number of invasive plant species is found in the same altitudinal range where the highest richness for native tree species is found. There is a clear trend of higher invasive plant richness in regions where native tree species richness is relatively high.Consequently, the native plant richness is highest in the central phytogeographic region, followed by the eastern and the western regions, respectively. The invasive plant species also follows a similar trend.Additionally, the invasive plant species richness was positively correlated with anthropogenic factors such as human population density and the number of visiting tourists. This study supports the hypothesis that ‘high native diversity' supports or facilitates invasive plant species. Further, it indicates that nativeand invasive plant species may require similar natural conditions, but that the invasive plant species seem more dependent and influenced by anthropogenic disturbance factors.  相似文献   

18.
A cruise was conducted from late August to early September 2004 with the intention of obtaining an interdisciplinary understanding of the Yangtze River Estuary including the biological, chemical and physical subjects. Water sample analysis indicated that total phytoplankton species richness was 137. Of them 81 were found in Bacillariophyta and 48 in Pyrrophyta, accounting for 59.1% and 35.0% respectively. The average cell abundance of surface water samples was 8.8×104 cells L-1, with the maximum, 102.9×104 cells L-1, encountered in the area (31.75°N, 122.33°E) and the minimum, 0.2×104 cells L-1, in (30.75°N, 122.17°E). The dominant species at most stations were Skeletonema costatum and Proboscia alata f. gracillima with the dominance of 0.35 and 0.27. Vertical distribution analysis indicated that obvious stratification of cell abundance and dominant species was found in the representative stations of 5, 18 and 33. Shannon-Wiener index and evenness of phytoplankton assemblage presented negative correlation with the cell abundance, with the optimum appearing in (30.75°N, 122.67°E). According to the PCA analysis of the environmental variables, elevated nutrients of nitrate, silicate and phosphate through river discharge were mainly responsible for the phytoplankton bloom in this area.  相似文献   

19.
We collected nine Enteromorpha specimens from the coast of Yantai and evaluated their diversity based on analyses of their ITS （internal transcribed spacer） and 5S rDNA NTS （non-transcribed spacer） sequences. The ITS sequences showed slight nucleotide divergences between Enteromorpha linza and Enteromorpha prolifera. In contrast, multiple highly variable regions were found in the ITS region of Enteromorpha flexuosa. In general, there were more variable sites in the NTS region than in the ITS region in the three species. The variations in 5S rDNA NTS sequences indicated that the molecular diversity of Enteromorpha from the coast of Yantai is very high. However, a phylogenetic tree constructed using 5S rDNA NTS sequence data indicated that genetic differences were not directly related to geographical distribution.  相似文献   

20.
《山地科学学报》2020,17(10):2354-2368
Stand structure dynamics are considered as major happenings in any forest as a response to environmental changes. However, this important topic is underrepresented in the treeline studies in the Nepal Himalayas. We aimed to investigate site-as well as species-specific changes in morphometric features(basal diameter, crown cover, density, and height) along the elevational gradient across treeline ecotones in response to recent environmental changes. The stand structure characteristics of Abies spectabilis, Pinus wallichiana, and Betula utilis across the treeline ecotone of three study sites in Eastern(Barun), Central(Manang), and Western(Dhorpatan) Nepal were analyzed to elucidate structural heterogeneities. Altogether, eight transects(20 m ×(60–250 m)) across the treeline ecotone were established. Trees of all life forms, trees( 2 m), saplings(0.5–2 m), and seedlings( 0.5 m), within each transect were enumerated and sampled for the morphometric features and age. Site-specific and species-specific stand structure dynamics were found. The rate of basal area increment was higher in Barun, but the Manang treeline, despite profound regeneration in recent years, had a low annual basal area increment. Moreover, the altitudinal distribution of age and morphometry were not consistent among those ecotones. Furthermore, intra-specific competition was not significant. The site-specific stand structure dynamics explain why treelines do not respond uniformly to increasing temperature. It invokes, in further studies, the incorporation of the tree's morphometric adaptation traits, phenotypic plasticity, and interactions between species genotype and the environment.  相似文献   

设为首页 | 免责声明 | 关于勤云 | 加入收藏

Copyright©北京勤云科技发展有限公司  京ICP备09084417号