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1.
DNA barcoding provides accurate identification of zooplankton species through all life stages. Single-gene-targeted metagenomic analysis based on DNA barcode databases can facilitate longterm monitoring of zooplankton communities. With the help of the available zooplankton databases, the zooplankton community of the Changjiang (Yangtze) River estuary was studied using a single-gene-targeted metagenomic method to estimate the species richness of this community. A total of 856 mitochondrial cytochrome oxidase subunit 1 (cox1) gene sequences were determined. The environmental barcodes were clustered into 70 molecular operational taxonomic units (MOTUs). Forty-two MOTUs matched barcoded marine organisms with more than 90% similarity and were assigned to either the species (similarity>96%) or genus level (similarity<96%). Sibling species could also be distinguished. Many species that were overlooked by morphological methods were identified by molecular methods, especially gelatinous zooplankton and merozooplankton that were likely sampled at different life history phases. Zooplankton community structures differed significantly among all of the samples. The MOTU spatial distributions were influenced by the ecological habits of the corresponding species. In conclusion, single-gene-targeted metagenomic analysis is a useful tool for zooplankton studies, with which specimens from all life history stages can be identified quickly and effectively with a comprehensive database. 相似文献
2.
Effects of DNA extraction and universal primers on 16S rRNA gene-based DGGE analysis of a bacterial community from fish farming water 总被引：3，自引：0，他引：3
Among many reports investigating microbial diversity from environmental samples with denaturing gradient gel electrophoresis (DGGE), limited attention has been given to the effects of universal primers and DNA extraction on the outcome of DGGE analysis. In this study, these effects were tested with 16S rRNA gene-based DGGE on a bacterial community from farming water samples. The results indicate that the number of discernable bands in the DGGE fingerprint differed with the primer pairs used; the bands produced by 63f/518r, 341f/926r and 933f/1387r primer pairs were obviously fewer than those by 968f/1401r. Also, we found that each DNA extraction method resulted in different community profiles, reflected by the number and intensity of bands in the DGGE fingerprint. Furthermore, the main bands (theoretically representing dominant bacteria) differed with the extraction methods applied. It is therefore believed that the effects of universal primers and DNA extraction should be given more attention and carefully chosen before performing an investigation into a new environment with DGGE. 相似文献
3.
In this study, we isolated a polysaccharide from Branchiostoma belcheri (PBB) by enzymatic protein hydrolysis and alcohol precipitation. We investigated the effects of PBB supplementation on DNA
oxidation and growth of the transplanted tumor cells Sarcoma (S180) in mice. Sixty healthy Kunming mice weighing between 18 and 25 g were randomly assigned to 6 groups, each consisting of
10 animals. All the mice, except for the blank control group, were inoculated with S180 sarcoma cells into the axilla of the
left foreleg. PBB was given to mice by gavage at doses of 0 (model control), 25, 50, or 100 mg/kg b.w. in 0.2 ml saline for
30 days. The fifth group of S180-mice was given cytoxan (50 mg/kg) by peritoneal injection as a positive control group. The animals had free access to food
and water. The mice were sacrificed after the final treatment and blood was quickly collected. Spontaneous and oxidized DNA
damage of peripheral lymphocytes induced by H2O2 were analyzed by SCGE. O6-methyl-guanine (O6-MeG) was measured by high-performance capillary zone electrophoresis. The average tumor weights (0.856–1.118 g) of the three
PBB groups were significantly lower than that of the model control group (1.836 g) (p<0.05). The tumor inhibition ratios of the PBB groups were 39.1%–53.4% and similar to the cytoxan positive group (57.5%).
There were no significant differences in spontaneous DNA damage in peripheral lymphocytes among the groups. The oxidative
DNA damage induced by 10 μmol/L H2O2 in the 50 and 100 mg/kg b.w. groups were 246.1 AU and 221.7 AU, respectively, both of which were significantly lower than
that in the model group (289.0 AU; p<0.05). The plasma concentrations of O6-MeG in the 25, 50, and 100 mg/kg supplemented groups were 2.09 μmol/L, 1.86 μmol/L, and 1.63 μmol/L, respectively, all of
which were significantly lower than that of the model group (2.67 μmol/L; p<0.05). These results indicated that PBB may have antioxidative activity and thus reduce oxidation-induced DNA damage. 相似文献
4.
1 INTRODUCTION The introduction of invasive marine species into new environments by ship’s ballast water, by attaching to ships’ hulls or via other vectors has been recognized as one of the four major threats to the world’s oceans by Global Environment… 相似文献
5.
There are rising concerns about the hazardous effects of heavy metals on the environment. In this study, comet assay and DNA alkaline unwinding assay were conducted on the tissues (gills, hepatopancreas, and hemocytes) of Charybdis japonica in order to illustrate genotoxicity of three heavy metal ions (Cu2+, Pb2+, and Cd2+) on the marine crabs C. japonica. The crabs were exposed to Cu2+ (10, 50, and 100 ?g.L?1), Pb2+ (50, 250, and 500 ?g L?1) and Cd2+ (5, 25, and 50 ?g L?1), and the tissues were sampled at days 0.5, 1, 3, 6, 9, and 15. DNA alkaline unwinding assay was used for testing the DNA single strand break in gills and hepatopancreas and comet assay was employed for testing the DNA damage in hemocytes. The results showed that the DNA damage (F-value) of gills in the crabs exposed to the three heavy metals was decreased gradually during the exposure periods and there was a dose-time response relationship in certain time, suggesting that the levels of DNA single strand break in all the experimental groups increased significantly compared to the controls. Changes of F-value in hepatopancreas of the crabs exposed to the three heavy metals were similar to those in gills except that the peak values were found in the 500 ?g L?1 Pb2+ treatment group at day 3 and the 50 ?g L?1 Cd2+ treatment group at day 9. The ranks of DNA damage in gills and hepatopancreas induced by the three heavy metal ions (50 ?g L?1, day 15) were Cd2+ >Pb2+ >Cu2+ and Pb2+ >Cu2+ >Cd2+. The levels of DNA damage in gills were higher than those in hepatopancreas in the same experimental group. It can be concluded that indices of DNA damage can be used as the potential biomarkers of heavy metal pollution in marine environment. 相似文献
6.
LI Siping HE Feng WEN Haishen SI Yufeng LIU Mingyuan HUANG Yajuan WU Shuxian 《中国海洋大学学报(英文版)》2020,19(1):171-182
Salinity is a crucial environmental stress that severely affects fish growth and survival.Under environmental stress,DNA methylation plays an important role in gene expression and genome function.To better understand the epigenetic regulation mechanism of igf2 under low salinity stress,we analyzed the DNA methylation at 5’UTR,exon1,intron1,and exon2,and analyzed the relationship of DNA methylation with mRNA abundance as well as the special single CpG sites methylation patterns of igf2 in the liver of half smooth tongue sole under low salinity(15)for 0,7,and 60 d.When exposed to low salinity,DNA methylation at 5’UTR and exon2 remained stable,while it was up-regulated firstly and then down-regulated at exon1 and intron1.Some single CpG sites of igf2 associated with low salinity,and most of these sites with significantly changed methylation levels(P<0.05)are located in intron1 area.The discrepant variation of single CpG sites methylation levels and igf2 expression further revealed that females and males showed different response to low salinity.Remarkably,the 38-CpG site of intron1 servers as a sexual marker.Additionally,our integrative analysis demonstrated that regional DNA of igf2 methylation had highly complex interplay on gene expression.The single CpG sites in intron1 were indispensable epigenetic markers under external environmental stress.Above all,to resist the low salinity stress,half smooth tongue sole liver can regulate the expression of igf2 through methylation of CpG sites in intron1. 相似文献
7.
With the implementation of the GEOTRACES program, the biogeochemical cycle and distribution of tellurium （Te） in marine environments are becoming increasing environmental concerns. In this study, the concentration of dissolved Te in the Changjiang （Yangtze） River estuary and nearby waters was determined in May 2009 by hydride-generation atomic fluorescence spectrometry to elucidate the abundance, dominant species, distribution, and relationship with environmental factors. Results show that： （1） dissolved Te was low owing to its low abundance in the Earth＇s crust, high insolubility in water, and strong affinity to particulate matter; （2） Te（IV） and Te（VI） predominated in surface water. Te（VI） was the dominant species in bottom water, and Te（IV） was the minor species; （3） Horizontally, resulting from low phytoplankton metabolism and the weak reduction from Te（VI） to Te（IV） in the shore, Te（IV） was concentrated in the central zone instead of the coastal region. However, Te（VI） was abundant near the mouth of the Changjiang River where the Changjiang water is diluted and in the area to the south where the Taiwan Warm Current invaded. In the adsorption-desorption process, Te（IV） was negatively related to suspended paniculate matter （SPM）, indicating that it was adsorbed by particulate matter. While for Te（VI）, the positive correlation with SPM suggested that it was desorbed from the solid phase. In the estuary, dissolved Te had a negative correlation to salinity. However, it deviated from the dilution line in high-salinity regions due to the invasion of the Taiwan Warm Current and the mineralization of organic matter. The relationship between Te（IV） and SPM nutrients indicated that it was more bioavailable and more related to phosphorus than to nitrogen. Progress in the field is slow and more research is needed to quantify the input of Te to the estuary and evaluate the biochemical role of organisms. 相似文献
8.
建立了一种虾、鱼、贝、藻多池循环水生态养殖及水质生物调控系统 ,该系统包括对虾养殖、鱼类养殖、贝类养殖、大型海藻栽培等 4个功能不同的养殖区 ,1个水处理区及 1个应急排水渠。通过在封闭循环系统内不同池塘中放养生态位互补的经济动植物 ,对虾池水质环境进行生物调控。结果表明 ,循环系统内虾池水层悬浮物数量、COD值、氨态氮含量比对照组单养对虾池明显降低 (t检验 ,P <0 .0 1)。养殖后排放水不处于富营养化状态 (E <1)。投入每千克对虾饲料生产0 .6 6 7kg对虾 ,同时生产 0 .0 37kg罗非鱼、0 .738kg牡蛎、0 .4 37kg江蓠 ,饲料利用率和经济效益显著增加。该养殖模式还具有防病性、环保性、高效性等优点 相似文献
9.
In this study, two common pollutants （benzo[a]pyrene and methamidophos） in marine environment were tested by comet assay for their inducement of in vivo genotoxic effect to the blood cells of black porgy （ Acanthopagrus schlegeli）. The fish was exposed to 2 μg/L of benzo[a]pyrene （BaP） and methamidophos, and their mixture. The assay was performed on whole blood at 2 h, 5 h, 24 h and 96 h exposure intervals. A significant increase in DNA damage was observed in each treatment with the pollutants. Additive effect of BaP and methamidophos was also found in the experiment. However, the decrease ratios of DNA damage for 5 h and 96 h exposure interals compared with 2 h and 24 h exposure ones, respectively, were noticed. This phenomenon may be explained by the function of repairing process via enzyme cytochrome P450 in the animal. Evidence of the genotoxicity of organophosphorus pesticides （OPs） and polynuclear aromatic hydrocarbons （PAHs） on marine fish are discussed in this paper. 相似文献
10.
Chouikh Nor-eddine Gillet Patrick Langston W. J. Cheggour Mohamed Maarouf Abdelmalek Mouabad Abdelfattah 《中国海洋湖沼学报》2020,38(1):143-155
Polychaetes are one of the most important groups of macrobenthic organisms in coastal and marine environments, in terms of diversity and abundance, and play an important role in the functioning of ecosystem. This study aims to describe the structure and spatial distribution of polychaete communities along Essaouira's rocky shoreline(Atlantic coast of Morocco) in relation to the major environmental variables such as granulometry, salinity, temperature, pH, and intertidal range. Twelve sites from these intertidal rocky shores were sampled using a quadrat method during the summer 2016. A total of 4 435 individuals belonging to 34 taxa were recorded. Among the families, Sabellaridae(24%) and Nereididae(23%) were ranked ?rst in terms of abundance of individuals. Sabellaria alveolata(24%) and Perinereis cultrifera(13%) were the dominant species. Diversity( H′) values varied from 2.28 to 3.95. Pielou's index( J′) varied between 0.62 and 0.89. This was essentially due to the low dominance of few species. Cluster analysis was used to characterise Essaouira's rocky shores on the basis of benthic polychaete communities. SIMPER analysis con?rmed the presence of three distinct communities. According to canonical correspondence analysis, the structure and distribution of faunal assemblages of benthic polychaetes was mainly related to topographical complexity, water temperature, hydrodynamic conditions and upwelling. We conclude that these rocky shores show typically high benthic polychaete diversity compared to the taxonomic list of other rocky coasts. In addition, these results constitute a baseline data for the development of a sustainable network for long-term monitoring of benthic polychaete community changes due to ecological factor in?uences and anthropogenic activity impacts. 相似文献
11.
In February 2006, a large amount of unknown floating microorganisms appeared in the Hailang River (HR) in the City of Hailin, Heilongjiang Province, China. The microorganisms caused the river water fouling and threatened the clean water supply of the city. To identify the unknown floating organisms, morphological and histological inspection, PCR, cloning and sequence analysis were conducted. The results revealed that the unknown floating organisms in the river were a novel species that likely belonged to oomycetes in Saprolegniales. The organisms were named Saprolegnia sp. HL0602. 相似文献
12.
快速、准确地从卫星影像中提取水体信息一直是遥感应用的热点问题,在水资源管理、水环境监测和灾害应急管理等领域极具应用价值。虽然目前已有多种针对Landsat系列影像的水体提取方法,但由于地理位置、地形和水体形态等环境背景因素的影响,导致同种方法在不同的环境背景中呈现出不同的提取效果。本文针对人为影响严重、影像明暗对比强烈的城区（北京怀柔县城周边）以及地形起伏明显、水体细小的非城区（北京密云水库周边） 2种典型背景环境,选择波段设置略有差异的Landsat 5（2009年）和Landsat 8（2019年）卫星影像,对比了常用的指数法（NDWI和MNDWI）和分类法（最大似然法和支持向量机）在水体信息提取方面的优势和不足。结果表明：在城区背景中,SVM的准确性最高（总体精度>97%）;在非城区背景中,MNDWI与SVM的精度相当（总体精度>95%）,前者更适用于水体的快速提取,而后者提取的山间细碎河流更完整,且在Landsat 8中应用的效果更好。该研究为不同环境背景下水体提取方法的选择提供了参考。 相似文献
13.
Abrupt changes in freshwater inputs from large rivers usually imply regime shifts in coastal water environments. The influence of a water regulation event on the age of the Yellow River water in the Bohai was modeled using constituent-oriented age and residence time theory to better understand the change in the environmental function of the hydrodynamic field owing to human activities. The water ages in Laizhou Bay, the central basin, and the Bohai strait are sensitive to water regulation. The surface ages in those areas can decrease by about 300 days, particularly in July, and the age stratification is also strengthened. A water regulation event can result in declines in the water age in early July ahead of declines in the water age under climatological conditions (without the regulation event) by about 1 and 5 months in the central basin and Laizhou Bay, respectively. The change in the coastal circulation due to the water regulation event is the primary reason for the change in the Yellow River water age. The high Yellow River flow rate can enhance the density flow and, therefore, reduce the age of the Yellow River water. The subsequent impact of a single water regulation event can last about 1.0 to 4.0 years in different subregions. 相似文献
14.
《中国海洋大学学报(英文版)》2018,(6)
Soft corals are an important group of organisms that live in reef ecosystems. In this study, the chemical defense of soft coral Sinularia polydactyla against biofilm-forming bacteria was assessed. The soft coral S. polydactyla was collected from the Obhur creek of the Red Sea and the bioactive compounds were extracted under different conditions using methanol and hexane as solvents. Results revealed that the bioactive compounds produced by the soft coral S. polydactyla were active against the growth, hydrophobicity and extracellular polymeric substances production of the biofilm-forming bacteria. However, the damage or injury in soft coral tissue caused a decrease in the activity against biofilm-forming bacteria. GC-MS analysis revealed that sesquiterpenes were abundant in normal coral sample extract while cembranoids were abundant in damaged coral sample extracts. In general, the results indicated that the soft corals either under stress or with damage may not have a strong chemical defense against the colonizing marine organisms and competitors. 相似文献
15.
INTRODUCTIONBiofoulingonunderwaterpartsofman mademarinestructuresisamajoreconomicandtechni calproblemhavinginternationaldimensionsforthedevelopmentofoceanengineeringbecauseitnotonlyincreasesstaticandhydrodynamicloading,butalsoaffectscorrosioncharacteristicsandim pedesunderwaterinspectionandmaintenance (CallowandEdyvean ,1 990 ) .Duetodifferencesingeographicalpositionsandenvironmentalconditions,thedistributionofsessileorganismsvarieswitharea .Therefore ,understandingtheformationofbiofoulin… 相似文献
16.
CHEN Jianwei CHEN Zhi LIU Shanshan GUO Wenjie LI Di MINAMOTO Toshifumi GAO Tianxiang 《中国海洋大学学报(英文版)》2021,(1)
Environmental DNA(eDNA)metabarcoding has emerged as a potentially powerful tool to monitor invasive fish species.As an alternative(or complementary)tool for biodiversity monitoring,e DNA metabarcoding had been used to detect species in aquariums,which represents an important transit avenue for introducing non-indigenous species with high population densities.In this study,eDNA metabarcoding as well as morphological characterization were used to reveal the diversity of non-indigenous species in a large aquarium at Qingdao Underwater World.Environmental DNA metabarcoding of 14 water samples at five locations from the Big Water Tank detected 24 non-indigenous species and four putative non-indigenous operational taxonomic units(OTUs).In contrast,only 20 non-indigenous species were observed by morphological characterization.Some species undetected by morphological characterization,such as Oreochromis niloticus(Linnaeus,1758),are highly adaptable to various environments and/or have invaded preferred regions where they threaten native aquatic species.eDNA metabarcoding also detected seven local fishes that were not identified by morphological characterization.However,analysis of OTU diversity among stations and sample replications revealed that eDNA varied within and/or between stations.Increasing sampling effort as well as negative controls are required to increase the detection rate of species and to eliminate false-positive OTUs. 相似文献
17.
The Yellow Sea Cold Water Mass(YSCWM) is a distinct hydrographic phenomenon of the Yellow Sea,and the distribution pattern of meio-and macrobentho s diffe rs inside and outside of the YSCWM.However,such a pattern has never been observed in the microbenthic ciliate communities.Therefore,we hypothesized that benthic ciliates followed a similar distribution pattern as meio-and macrobentho s,but this pattern has not been uncovered by morphological methods.We evaluated the diversity and distribution of benthic ciliates at five stations along hydrographic gradients across the YSCWM and adj acent shallow water by using morphology and DNA and complementary DNA(cDNA) high-throughput sequencing of the V4 region of 18 S rRNA gene.Results showed that the diversity of benthic ciliate s detected by DNA(303 OTU s),and the cDNA(611 OTUs) sequencing was much higher than that detected by the morphological method(79 species).Morphological method detected roughly different ciliate communities inside and outside of the YSCWM,but without statistical significance.No clear pattern was obtained by DNA sequencing.In contrast,cDNA sequencing revealed a distinct distribution pattern of benthic ciliate communities like meioand macrobenthos,which coincided well with the results of the environmental parameter analysis.More than half of the total sequences detected by DNA sequencing belonged to planktonic ciliates,most(if not all) of which were recovered from historic DNA originating through the sedimentation of pelagic forms because none of them were observed morphologically.The irrelevant historic DNA greatly influenced the recovery of rare species and thus limited the understanding of the benthic ciliate diversity and distribution.Our research indicates that the methods used have significant effects on the investigation of benthic ciliate communities and highlights that cDNA sequencing has great advantages in estimating the diversity and distribution of benthic ciliates,as well as the potential for benthic environmental assessments. 相似文献
18.
19.
The corrosion of rebar in reinforced concrete in marine environments causes significant damage to structures built in ocean environments. Studies on the process and mechanism of corrosion of rebar in the presence of multiple ions may help to control damage and predict the service life of reinforced concrete structures in such environments. The effect of interactions between sulfate and chloride ions and calcium hydroxide on the electrochemical behavior of rebar are also important for evaluation of structure durability. In this work, electrochemical impedance spectroscopy(EIS) plots of rebar in Ca(OH)_2 solution and cement grout, including NaCl and Na_2SO_4 as aggressive salts, were measured for different immersion times. The results show that corrosion of rebar was controlled by the rate of charge transfer as the rebar was exposed to chloride solution. In the presence of high concentrations of sulfate ions in the electrolyte, generation and dissolution of the passive film proceeded simultaneously and corrosion was mainly controlled by the diffusion rate. When Na_2SO_4 and NaCl were added to Ca(OH)_2 solution, the instantaneous corrosion rate decreased by a factor of 10 to 20 as a result of the higher p H of the corroding solution. 相似文献
20.
A harmful algae bloom (HAB) is a dense aggregation of algae in a marine or aquatic environment that can result in significant
environmental problems. To forecast the occurrence of HAB, development of a rapid and precise detection method is urgently
required. In this study, two Skeletonema costatum-like diatoms (SK-1 and SK-2), were identified morphologically under a light microscope, and detected using fluorescent in situ hybridization (FISH). Strain SK-1 was isolated from a frequently HAB affected area of the East China Sea, and strain SK-2
from an aquatic farm in Qingdao, China. Fluorescent DNA probes were designed that were complementary to the ITS sequence (including
5.8S rDNA) of strain SK-1. After hybridization, strong green fluorescence was observed in cells of strain SK-1 under an epifluorescence
microscope; however, no such fluorescence was observed with strain SK-2, which indicates that probes hybridized only the DNA
of the target strain, SK-1, in species-specific manner, and that the two strains do not belong to a same species. This finding
was confirmed by ITS sequence analysis. The FISH technique used in this study was sensitive, simple, and rapid, and is a promising
tool for detecting target HAB species in natural environments. 相似文献