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1.
The anaerobic oxidation of methane in aquatic environments is a globally significant sink for a potent greenhouse gas. Significant gaps remain in our understanding of the anaerobic oxidation of methane because data describing the distribution and abundance of putative anaerobic methanotrophs in relation to rates and patterns of anaerobic oxidation of methane activity are rare. An integrated biogeochemical, molecular ecological and organic geochemical approach was used to elucidate interactions between the anaerobic oxidation of methane, methanogenesis, and sulfate reduction in sediments from two cold seep habitats (one brine site, the other a gas hydrate site) along the continental slope in the Northern Gulf of Mexico. The results indicate decoupling of sulfate reduction from anaerobic oxidation of methane and the contemporaneous occurrence of methane production and consumption at both sites. Phylogenetic and organic geochemical evidence indicate that microbial groups previously suggested to be involved in anaerobic oxidation of methane coupled to sulfate reduction were present and active. The distribution and isotopic composition of lipid biomarkers correlated with microbial distributions, although concrete assignment of microbial function based on biomarker profiles was complicated given the observed overlap of competing microbial processes. Contemporaneous activity of anaerobic oxidation of methane and bicarbonate-based methanogenesis, the distribution of methane-oxidizing microorganisms, and lipid biomarker data suggest that the same microorganisms may be involved in both processes.  相似文献   

2.
The interaction of plant and microbial communities are known to influence the dynamics of methane emission in wetlands. Plant manipulations were conducted in an organic rich (JB-organic) and a mineral rich (JB-mineral) site in a tidal freshwater wetland to determine if plant removal impacted archaeal populations. In concert, a suite of process-based measurements also determined the effects of plant removal on rates of methanogenesis and Fe-reduction. The microbial populations were analyzed with clone libraries of the SSU ribosomal RNA (rRNA) gene from selected plots, and terminal restriction length polymorphism (tRFLP) of the SSU rRNA and the methyl-coenzyme M reductase (mcrA) gene. Overall, methanogenesis dominated anaerobic carbon mineralization at both sites during the most active growing season. A total of 114 SSU rRNA clones from four different plots revealed a diversity of Euryarchaeota including representatives of the Methanomicrobiales, Methanosarcinales and Thermoplasmatales. The clone libraries were dominated by the Thaumarchaeota, accounting for 65 % of clones, although their diversity was low. A total of 112 tRFLP profiles were generated from 56 samples from 25 subplots; the patterns for both SSU rRNA and mcrA showed little variation between sites, either with plant treatment or with the growing season. Overall these results suggest that wetland soil archaeal populations were resilient to changes in the associated surface plant communities. The work also revealed the presence of novel, mesophilic Thaumarchaeota of unknown metabolic function.  相似文献   

3.
Incubation experiments were adopted to characterize the rates and pathways of iron reduction and the contributions to anaerobic organic matter mineralization in the upper 0–5 cm of sediments along a landscape-scale inundation gradient in tidal marsh sediments in the Min River Estuary, Southeast China. Similar sediment characteristics, single-species vegetation, varied biomass and bioturbation, distinct porewater pH, redox potential, and electrical conductivity values have resulted in a unique ecogeochemical zonation along the inundation gradient. Decreases in solid-phase Fe(III) and increases in nonsulfidic Fe(II) and iron sulfide were observed in a seaward direction. Porewater Fe2+ was only detected in the upland area. High rates of iron reduction were observed in incubation jars, with significant accumulations of nonsulfidic Fe(II), moderate accumulations of iron sulfides, and negligible accumulations of porewater Fe2+. Most of the iron reduction was microbially mediated rather than coupled to reduced sulfides. Microbial iron reduction accounted for 20–89 % of the anaerobic organic matter mineralization along the inundation gradient. The rate and dominance of microbial iron reduction generally decreased in a seaward direction. The contributions of microbial iron reduction to anaerobic organic matter mineralization depended on the concentrations of bioavailable Fe(III), the spatial distribution of which was significantly related to tidal inundation. Our results clearly showed that microbial iron reduction in the upper sediments along the gradient is highly dependent on spatial scales controlled primarily by tidal inundation.  相似文献   

4.
The relationships between soil texture, plant growth, and anaerobic microbial activity in two tall-formSpartina alterniflora marshes on Sapelo Island, Georgia, were compared. The soil of one marsh was composed of typical silt-clay-sized particles; the soil of the other marsh consisted of >90% sand-sized particles. The two soils supported similar biomasses ofS. alterniflora, however, plants were taller and more robust in the silt-clay-soil than in the sand soil. Total microbial adenosine triphosphate concentrations in the silt-clay and sand soils averaged 5.71 and 1.64 μg per cm3, respectively. Seawater slurries of both soils exhibited potential for microbial sulfate reduction, methanogenesis, and glucose fermentation; rates for the processes averaged 2.03 and 0.33 nmol S-cm3 per h; 1.20 and 0.87 μmol CH4 per cm3 per h; and 0.04 and 0.12 per min (rate constant) for the sand and silt-clay soils, respectively.  相似文献   

5.
Fe (III) reduction is a key component of the global iron cycle, and an important control on carbon mineralization. However, little is known about the relative roles and rates of microbial (biotic) iron reduction, which utilizes organic matter, versus abiotic iron reduction, which occurs without carbon mineralization. This paper reports on the capacity for salt marsh sediments, which typically are rich in iron, to support abiotic reduction of mineral Fe (III) driven by oxidation of sulphide. Sediment was reacted with amorphous FeS under strictly anaerobic conditions at a range of temperatures in biotic and abiotic microcosm experiments. Fe (III) reduction driven by sulphide oxidation occurs abiotically at all temperatures, leading to Fe (II) and elemental sulphur production in all abiotic experiments. In biotic experiments elemental sulphur is also the oxidized sulphur product but higher bicarbonate production leads to FeCO3 precipitation. Abiotic reduction of Fe (III) occurs at rates that are significant compared with microbial Fe (III) reduction in salt marsh sediments. The solid phases produced by coupled abiotic and biotic reactions, namely elemental sulphur and FeCO3, are comparable to those seen in nature at Warham, Norfolk, UK. Furthermore, the rates of these processes measured in the microcosm experiments are sufficient to generate siderite concretions on the rapid time scales observed in the field. This work highlights the importance of abiotic Fe (III) reduction alongside heterotrophic reduction, which has implications for iron cycling and carbon mineralization in modern and ancient sediments.  相似文献   

6.
Solid phase and pore water chemical data collected in a sediment of the Haringvliet Lake are interpreted using a multi-component reactive transport model. This freshwater lake, which was formed as the result of a river impoundment along the southwestern coast of the Netherlands, is currently targeted for restoration of estuarine conditions. The model is used to assess the present-day biogeochemical dynamics in the sediment, and to forecast possible changes in organic carbon mineralization pathways and associated redox reactions upon salinization of the bottom waters. Model results indicate that oxic degradation (55%), denitrification (21%), and sulfate reduction (17%) are currently the main organic carbon degradation pathways in the upper 30 cm of sediment. Unlike in many other freshwater sediments, methanogenesis is a relatively minor carbon mineralization pathway (5%), because of significant supply of soluble electron acceptors from the well-mixed bottom waters. Although ascorbate-reducible Fe(III) mineral phases are present throughout the upper 30 cm of sediment, the contribution of dissimilatory iron reduction to overall sediment metabolism is negligible. Sensitivity analyses show that bioirrigation and bioturbation are important processes controlling the distribution of organic carbon degradation over the different pathways. Model simulations indicate that sulfate reduction would rapidly suppress methanogenesis upon seawater intrusion in the Haringvliet, and could lead to significant changes in the sediment’s solid-state iron speciation. The changes in Fe speciation would take place on time-scales of 20-100 years.  相似文献   

7.
Soil quality indices provide a means of distilling large amounts of data into a single metric that evaluates the soil’s ability to carry out key ecosystem functions. Primarily developed in agroecosytems, then forested ecosystems, an index using the relation between soil organic matter and other key soil properties in more semi-arid systems of the Western US impacted by different geologic mineralization was developed. Three different sites in two different mineralization types, acid sulfate and Cu/Mo porphyry in California and Nevada, were studied. Soil samples were collected from undisturbed soils in both mineralized and nearby unmineralized terrane as well as waste rock and tailings. Eight different microbial parameters (carbon substrate utilization, microbial biomass-C, mineralized-C, mineralized-N and enzyme activities of acid phosphatase, alkaline phosphatase, arylsulfatase, and fluorescein diacetate) along with a number of physicochemical parameters were measured. Multiple linear regression models between these parameters and both total organic carbon and total nitrogen were developed, using the ratio of predicted to measured values as the soil quality index. In most instances, pooling unmineralized and mineralized soil data within a given study site resulted in lower model correlations. Enzyme activity was a consistent explanatory variable in the models across the study sites. Though similar indicators were significant in models across different mineralization types, pooling data across sites inhibited model differentiation of undisturbed and disturbed sites. This procedure could be used to monitor recovery of disturbed systems in mineralized terrane and help link scientific and management disciplines.  相似文献   

8.
An oil-refining plant site located in southern Taiwan has been identified as a petroleum-hydrocarbon [mainly methyl tert-butyl ether (MTBE) and benzene, toluene, ethylbenzene, and xylenes (BTEX)] spill site. In this study, groundwater samples collected from the site were analyzed to assess the occurrence of intrinsic MTBE biodegradation. Microcosm experiments were conducted to evaluate the feasibility of biodegrading MTBE by indigenous microorganisms under aerobic, cometabolic, iron reducing, and methanogenic conditions. Results from the field investigation and microbial enumeration indicate that the intrinsic biodegradation of MTBE and BTEX is occurring and causing the decrease in MTBE and BTEX concentrations. Microcosm results show that the indigenous microorganisms were able to biodegrade MTBE under aerobic conditions using MTBE as the sole primary substrate. The detected biodegradation byproduct, tri-butyl alcohol (TBA), can also be biodegraded by the indigenous microorganisms. In addition, microcosms with site groundwater as the medium solution show higher MTBE biodegradation rate. This indicates that the site groundwater might contain some trace minerals or organics, which could enhance the MTBE biodegradation. Results show that the addition of BTEX at low levels could also enhance the MTBE removal. No MTBE removal was detected in iron reducing and methanogenic microcosms. This might be due to the effects of low dissolved oxygen (approximately 0.3 mg/L) within the plume. The low iron reducers and methanogens (<1.8×103 cell/g of soil) observed in the aquifer also indicate that the iron reduction and methanogenesis are not the dominant biodegradation patterns in the contaminant plume. Results from the microcosm study reveal that preliminary laboratory study is required to determine the appropriate substrates and oxidation-reduction conditions to enhance the biodegradation of MTBE. Results suggest that in situ or on-site aerobic bioremediation using indigenous microorganisms would be a feasible technology to clean up this MTBE-contaminated site.  相似文献   

9.
杨守业  王权 《地球科学进展》2011,26(12):1282-1289
伊平屋北部热液区（IheyaNoAhhydrothermalfield）位于冲绳海槽中部地区。综合大洋钻探计划（IODP）331航次于2010年9月1日至10月4日在该区钻探了5个站位（C0013-C0017）：C0016站位位于NoahBigChimney（NBC）地区活跃的热液烟囱和硫化物-硫酸盐丘状体上;在C00...  相似文献   

10.
张玉燕  刘红旭  修晓茜 《地质学报》2016,90(12):3508-3518
层间氧化带砂岩型铀矿床中微生物参与成矿现象和微生物活动证据越来越多,表明微生物对当今我国主攻的层间氧化带砂岩型铀矿床的形成起重要作用。本文利用分子生物学、活菌培养和实验室模拟等方法对新疆十红滩和蒙其古尔两个典型砂岩型铀矿床中微生物与铀成矿作用关系进行了探讨,结果表明不同地球化学环境带岩石中主要微生物类群的分布特征不同,表现出明显的生物地球化学分带性,从氧化带到还原带,喜氧菌数量逐渐减少,厌氧菌数量递增,各带细菌的分布受容矿层中有机碳含量、铁的存在形式及含量、所赋存地下水的溶解氧和硫酸盐含量等的控制。微生物对铀成矿的影响是综合性的,同时也受到各种环境因素的制约,微生物之间也存在着共生、互生、竞争和拮抗的关系,从而影响着矿床的发育。该类铀矿床微生物富集铀的机制是以间接的非代谢性生物吸附为主,而代谢性富集机制则是次要的。  相似文献   

11.
The influence of plant primary compounds on the activity of soil microbial communities under heavy metal stress was studied in a pot-culture field experiment conducted in a green house. Amaranthus spinosus was cultivated in an agricultural soil previously amended in the laboratory with solutions of different trace elements in two separate treatment modes: singly and in combination. Culture-independent metabolism based indices such as the rate of carbon and nitrogen mineralization, microbial biomass carbon and soil basal respiration were monitored fortnightly over a period of six weeks. Result shows that plant detritus have significant modifying effect on soil microbe-metal interactions. Data on microbial and biochemical processes in the respective mesocosms did not vary from control; not even in mesocosms containing very high concentrations of copper, zinc and nickel. The soil microbial biomass carbon and the rate of carbon and nitrogen cycling were not impeded by the respective metal treatment while the respiration responses increased as a result of increase in metabolic activity of the soil microbes. The plant based substrates enabled the soil microflora to resist high metal contamination because of its tendency to absorb large amounts of inorganic cations.  相似文献   

12.
Soils in New Zealand, and elsewhere, often contain substantial zones of ferro-manganese concretions and pans (laterally continuous layers) that can affect soil quality and management. Soils containing concretions and pans from Southland, New Zealand, were investigated to determine links between microbial ecology and geochemistry. Three soil profiles were sampled at 100-mm intervals to a depth of 1 m and then assayed for nine different populations of bacteria using selective media. Geochemical analysis was performed on the soils at the same intervals, and on shallow groundwater from nearby wells. The largest concentrations of iron (Fe) and manganese (Mn) coincide with concretions. Nitrogen (N) and carbon (C) are not correlated with Fe and Mn but may be depleted due to bacterial metabolism. Fe and Mn concentrations in groundwater are low, suggesting that the source of these elements in the concretions and pans is in situ weathering rather than groundwater. Numbers of iron oxidising organisms increase where concretions and pans are encountered, but manganese-oxidising organisms decrease. Heterotrophic, sulphur-oxidising, and anaerobic populations have relatively consistent numbers at all depths within the profiles. Fifty organisms were selected for phylogenetic characterisation, of which only Pseudomonas sp. is known to have significant interactions with Fe and Mn. These results suggest a link between concretion development and iron-oxidising microbial populations.  相似文献   

13.
边缘海沉积物是海洋重要的碳储库,其内部的碳循环主要是由有机质矿化分解过程来驱动的。有机碳进入边缘海沉积物后,矿化分解为溶解无机碳(DIC)进入沉积物孔隙水并扩散到上层水柱,参与海洋系统碳循环;同时还有部分DIC与钙镁等离子结合形成自生碳酸盐,保存于沉积物碳库。从生物地球化学角度探讨有机质埋藏机制和效率,在此基础上重点综述沉积物硫酸盐还原、产甲烷和甲烷厌氧氧化过程的耦合机制,以及有机质矿化对自生碳酸盐形成的影响等方面的研究进展,以期加深对陆架边缘海沉积物在全球碳循环收支平衡中的作用及其气候环境效应的认识。  相似文献   

14.
The significance of microbial processes in hydrogeology and geochemistry   总被引：3，自引：0，他引：3  
2 (methanogenesis). In aquifers contaminated by anthropogenic contaminants, an excess of available organic carbon often exists, and microbial metabolism is limited by the availability of electron acceptors. In addition to changes in groundwater chemistry, the solid matrix of the aquifer is affected by microbial processes. The production of carbon dioxide and organic acids can lead to increased mineral solubility, which can lead to the development of secondary porosity and permeability. Conversely, microbial production of carbonate, ferrous iron, and sulfide can result in the precipitation of secondary calcite or pyrite cements that reduce primary porosity and permeability in groundwater systems. Received, January 1999/Revised, July 1999, August 1999/Accepted, October 1999  相似文献   

15.
铀的微生物成矿作用研究进展   总被引：8，自引：0，他引：8  
铀的微生物成矿作用研究尚处于实验研究阶段。微生物富集铀的机制可分为代谢性和非代谢性两类。前与代谢产生的酶、化学配位体、排泄物对铀酰的络合、还原有关；后是由细胞的负电位与带正电荷的UO2^2 间产生生理-化学作用，导致铀的生物吸附、吸收、离子交换和沉淀。它与微生物的代谢、活力无关。综述了厌氧菌、喜氧菌富集铀的实验结果、富集机制和今后研究的发展趋向。  相似文献   

16.
微生物参与前寒武纪条带状铁建造沉积的研究进展   总被引：1，自引：0，他引：1       下载免费PDF全文
地球演化早期太古代和早元古代大规模的条带状铁建造(BIF)是目前世界上最重要的铁矿资源。已有的稳定同位素组成、分子化石以及岩石磁学性质等证据支持早期微生物广泛参与了BIF的形成。本文评述了微生物参与BIF形成过程中铁搬运和沉淀及其同位素分馏、生物标志物和岩石磁学证据。深入地研究BIF成矿中的微生物矿化贡献,有助于解释BIF形成机制,反演前寒武纪大气-海洋环境演化,以及理解地球早期生命的过程。  相似文献   

17.
Well-preserved siliciclastic domal stromatolites, up to 2 m wide and 1·5 m high, are found in a 10 to 15 m thick interval within the Late Ordovician Eureka Quartzite of Southern Nevada and Eastern California, USA. These stromatolites appear as either isolated features or patchy clusters that contain more than 70% by volume quartz grains; their association with planar, trough and herringbone cross-bedding suggests that they were formed in an upper shoreface environment with high hydraulic energy. In this environment, sand bars or dunes may have provided localized shelter for initial microbial mat colonization. Biostabilization and early lithification of microbial mats effectively prevented erosion during tidal flushing and storm surges, and the prevalence of translucent quartz sand grains permitted light penetration into the sediment, leading to thick microbial mat accretion and the formation of domal stromatolites. Decimetre-scale to metre-scale stromatolite domes may have served as localized shelter and nucleation sites for further microbial mat colonization, forming patchy stromatolite clusters. Enrichment of iron minerals, including pyrite and hematite, within dark internal laminae of the stromatolites indicates anaerobic mineralization of microbial mats. The occurrence of stromatolites in the Eureka Quartzite provides an example of microbial growth in highly stressed, siliciclastic sedimentary environments, in which microbial communities may have been able to create microenvironments promoting early cementation/lithification essential for the growth and preservation of siliciclastic stromatolites.  相似文献   

18.
Complex investigations of recent and Drevnechernomorian (ancient Black Sea) sediments from the outer shelf, continental slope, and deep-water basin of the Russian Black Sea sector have been carried out using samples collected during cruise of the R/V Professor Shtokman organized by the Institute of Oceanology of the Russian Academy of Sciences (March 2009) and expedition of “YUZHMORGEO” (summer 2006). Rates of the main anaerobic processes during diagenesis (sulfate reduction, dark CO2 fixation, methanogenesis, and methane oxidation) were studied for the first time in sediment cores of the studied area. Two peaks in the rate of microbial processes and two sources of these processes were identified: the upper peak near the water-sediment contact is related to the solar energy (OM substrate of the water column) and the lower peak at the base of the Drevnechernomorian sediments with high(>1000 μM) methane concentration related to the energy of anaerobic methane oxidation. The neogenic labile OM formed during this process is utilized by other groups of microorganisms. According to experimental data, the daily rate of anaerobic methane oxidation is many times higher than that of methanogenesis, which unambiguously indicates the migration nature of the main part of methane.  相似文献   

19.
Continental margin sediments are important ocean carbon repository, and the internal carbon cycle is mainly driven by the mineralization processes of sedimentary organic matter. Most organic carbon is transformed to Dissolved Inorganic Carbon (DIC) by mineralization processes after being delivered to continental margin sediments, and DIC from pore water diffuses into the upper water column and participates in the ocean carbon cycle. At the same time, some DIC combines ions such as Ca2+ and Mg2+ and precipitates as authigenic carbonate minerals so that carbon is stored in the deposits. Based on the biogeochemical study of the mechanism and efficiency of organic matter burial, we discussed the interaction among sulfate reduction, methanogenesis and anaerobic oxidation of methane, and the effect of organic mineralization on the formation of authigenic carbonate. By reviewing the above-mentioned aspects, we can obtain a better understanding of the role of continental margin sediments in the global carbon cycling budgets as well as its climate and environmental effects.  相似文献   

20.
The study addresses a 10 m deep phreatic postglacial sandy aquifer of vertically varying lithology and horizontally varying infiltration water chemistry, displaying calcite dissolution, ion-exchange, and anaerobic redox processes. The simple variations in lithology and infiltration combine into a complex groundwater chemistry, showing ongoing Fe-oxide reduction, sulfate reduction and methanogenesis. Rates of sulfate reduction, methanogenesis and methane oxidation were measured directly using radiotracers. Maximum rates were 1.5 mM/yr for sulfate reduction, 0.3 mM/yr for methanogenesis, and only 4.5 μM/yr for methane oxidation. The overlap of sulfate reduction and methanogenesis was very small. The important intermediates formed during the degradation of the organic matter in the sediment, formate and acetate, had concentrations around 2 μM in the sulfate reducing zone, increasing to 10 and 25 μM in the methanogenic part. The concentration of H2 was around 0.25 nM in the Fe-reducing zone, 0.4 nM in the sulfate reducing zone, and increased to 6 nM in the methanogenic zone. Using in situ concentrations of products and reactants the available energies for a range of different reactions could be calculated. The results of the calculations are in accordance with the observed distribution of the ongoing redox processes, implying that the system is well described using a partial equilibrium approach. A 2D numerical PHAST model of the system based on the partial equilibrium approach, extended by implementing specific energy yields for the microbial redox processes, could explain most of the observed groundwater geochemistry as an expression of a closely coupled system of mineral equilibria and redox processes occurring at partial equilibrium.  相似文献   

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