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1.
A putative tetrasporophyte-specific gene, designated as SSH466 (GenBank accession No. DQ019223), was one of the genes identified
in this work using suppression subtractive hybridization (SSH) method in Gracilaria lemaneiformis. The full length of the gene was obtained using SMART RACE strategy. Sequence analysis revealed that the gene had 1 019 nucleotides,
including an open reading frame of 498 nucleotides encoding 166 amino acid residues, 158 nucleotides of 5′ untranslated region
and 363 nucleotides of 3′ non-coding region. Protein motif and secondary structure prediction showed that there existed a
transmembrane domain with a unique β-sheet. Thus, SSH466 protein might be a cross-membrane protein. Sequence homology search
in the public GenBank databases did not reveal any significant match with SSH466. Virtual Northern blot analysis confirmed
that it was a tetrasporophyte-specific gene. 相似文献
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Reversible protein phosphorylation, catalyzed by protein kinases and phosphatases, is an important and versatile mechanism by which eukaryotic cells regulate almost all the signaling processes. Protein phosphatase 1 (PP1) is the first and well-characterized member of the protein serine/threonine phosphatase family. In the present study, a full-length cDNA encoding the beta isoform of the catalytic subunit of protein phosphatase 1(PP1cb), was for the first time isolated and sequenced from the skin tissue of flatfish turbot Scophthalmus maximus, designated SmPP1cb, by the rapid amplification of cDNA ends (RACE) technique. The cDNA sequence of SmPP1cb we obtained contains a 984 bp open reading frame (ORF), flanked by a complete 39 bp 5' untranslated region and 462 bp 3' untranslated region. The ORF encodes a putative 327 amino acid protein, and the N-terminal section of this protein is highly acidic, Met-Ala-Glu-Gly-Glu-Leu-Asp-Val-Asp, a common feature for PP1 catalytic subunit but absent in protein phosphatase 2B (PP2B). And its calculated molecular mass is 37 193 Da and pI 5.8. Sequence analysis indicated that, SmPP1cb is extremely conserved in both amino acid and nucleotide acid levels compared with the PP1cb of other vertebrates and invertebrates, and its Kozak motif contained in the 5'UTR around ATG start codon is GXXAXXGXXATGG, which is different from mammalian in two positions A-6 and G-3, indicating the possibility of different initiation of translation in turbot, and also the 3'UTR of SmPP1cb is highly diverse in the sequence similarity and length compared with other animals, especially zebrafish. The cloning and sequencing of SmPP1cb gene lays a good foundation for the future work on the biological functions of PP1 in the flatfish turbot. 相似文献
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利用PCR技术分别扩增连云港及启东沿海蛤蜊科的西施舌(Coelomactra antiquata)、中国蛤蜊(Mactrachinensis)和四角蛤蜊(Mactra veneriformis)3种双壳贝的16S rRNA基因片段和ITS2核苷酸序列,测序后用DNA star软件分析了核苷酸差异。结果显示:三种贝类16S rRNA基因片段长度相同,均为306bp(去除引物),核苷酸存在多态性,共有45个变异位点,54个核苷酸发生了变异,全部为碱基置换。西施舌与中国蛤蜊此片段核苷酸的同源性为88.9%,与四角蛤蜊的同源性为88.6%,中国蛤蜊与四角蛤蜊的同源性为90.6%。三种蛤蜊ITS2序列分别为390 bp(西施舌)4、41 bp(四角蛤蜊)和466 bp(中国蛤蜊),存在长度多态性,ITS2核苷酸差异分析结果显示,西施舌与中国蛤蜊的同源性为70.9%-71.1%,西施舌与四角蛤蜊的为70.5%-71.0%,中国蛤蜊与四角蛤蜊的同源性为88.1%-88.8%。ITS2序列分析结果与16S rRNA基因片段分析结果一致,2种分子分析法均显示中国蛤蜊与四角蛤蜊的亲缘关系近。 相似文献
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Plants possess effective mechanisms to respond quickly to the external environment.Rapid activation of phosphatidylinositol-specific phospholipase C(PLC)enzymes occurs after a stimulus.The PLC in Dunaliella salina play s important roles in growth and stress responses.However,the molecular basis of PLC action in D.salina remains little understood.To gain insight into the potential biological functions of this enzyme,we cloned a phospholipase C gene from D.salina in a previous study,named DsPLC(GenBank No.KF573428).Here,we present the prokaryotic expression,purification,and characterization of the DsPLC gene.The entire coding region of DsPLC was inserted into an expression vector pET32 a,and the DsPLC gene was successfully expressed in Escherichia coli.The DsPLC protein was purified and identified using a polyclonal antibody and western blotting.Expressing DsPLC fused with a green fluorescent protein(GFP)in onion showed that DsPLC-GFP was localized to the intracellular membrane.Quantitative real-time PCR analysis revealed that the relative expression of the DsPLC gene was induced significantly by 3.0-mol/L NaCl at 4 h.Our results support the importance of PLC enzymes in plant defense signaling.This study provides a basis for further functional studies of the DsPLC gene and for additional analysis of the potential roles of PLC enzymes in response to abiotic stress. 相似文献
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The molecular basis of color polymorphism in the shells of the pearl oyster Pinctada fucata is largely unknown. We developed a red-shelled family line and used suppression subtractive hybridization (SSH) to screen for differentially expressed genes in red- and non-red-shelled pearl oysters. We constructed forward and reverse cDNA subtractive libraries consisting of 2 506 and 797 clones, respectively. Among 343 randomly selected clones in the forward library, 304 sequences were identified in GenBank using BLASTx and BLASTn. Of the 304 sequences, 13 showed no similarity to known sequences and 291 were matched with known genes of the pearl oyster, including shematrin-1, shematrin-2, shematrin-6, shematrin-7, nacrein, nacrein-like protein, aspein for shell matrix protein, glycine-rich protein, mantle gene 5, 28S, EST00031, EST00036, 16S, and COΙ. In the reverse library, 7 clones were sequenced and analyzed by BLAST. Two sequences shared similarity with EST00036 from the P. fucata subtraction cDNA library, four with the P. fucata mitochondrial gene for 16S rRNA and 1 with P. fucata shematrin-2. We evaluated the expression of 12 genes from the forward library using RT PCR. Two sequences matched with 16S and COΙ so were considered to be false positives. The remaining 10 sequences were differentially expression in the red-shelled pearl oysters. Our results suggest that differential expression of these genes may be related to color variation in the red-shelled family line of the pearl oyster. 相似文献
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Sea surface height variations in the Mindanao Dome region in response to the northern tropical Pacific winds 总被引：1，自引：0，他引：1
Sea surface height (SSH) variability in the Mindanao Dome (MD) region is found to be one of the strong variations in the northern Pacific. It is only weaker than that in the Kuroshio Extension area, and is comparable to that in the North Pacific Subtropical Countercurrent region. Based on a 1.5-layer reduced gravity model, we analyzed SSH variations in this region and their responses to northern tropical Pacific winds. The average SSH anomaly in the region varies mainly on a seasonal scale, with significant periods of 0.5 and 1 year, ENSO time scale2-7years, and time scale in excess of 8 years. Annual and long-term variabilities are comparably stronger. These variations are essentially a response to the northern tropical Pacific winds. On seasonal and ENSO time scales, they are mainly caused by wind anomalies east of the region, which generate westward-propagating, long Rossby waves. On time scales longer than 8 years, they are mostly induced by local Ekman pumping. Long-term SSH variations in the MD region and their responses to local winds are examined and discussed for the first time . 相似文献
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The relationship between heat content and sea surface height (SSH) in the global ocean on the interannual time scale is examined with satellite altimeter measurements, historical hydrography, and model assimilation outputs. Results show that correlation between altimetric SSH and heat content in the upper 700 m calculated from Ishii data is geographically nonuniform. In the tropical ocean, heat content and SSH are strongly correlated and exhibit nearly the same interannual variations. In the polar ocean, their correlation is relatively weak. Further analysis with Simple Ocean Data Assimilation outputs shows that such nonuniform distribution is not from dynamical origin but from the limited integral depth selected to calculate heat content. The integral depth of 700m is inadequate to capture variation of the deep main thermocline in the polar region. The halosteric effect also contributes to the nonuniform pattern of correlation, because saline contraction becomes significant in the polar ocean owing to low temperature. 相似文献
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Gleb Panteleev Dmitri Nechaev Vladimir Luchin Phyllis Stabeno Nikolai Maximenko Motoyoshi Ikeda 《极地研究(英文版)》2008,19(2):123-134
The Bering Sea circulation is derived as a variational inverse of hydrographic profiles（ temperature and salinity） , atmospheric climatologies and historical observation of ocean curents. The important result of this study is estimate of the mean climatological sea surface height （SSH） that can be used as a reference for satellite altimetry sea level anomaly data in the Bering Sea region. Numerical experiments reveal that, when combined with satellite altimetry, the obtained reference SSH effectively constrains a realistic reconstruction of the Amukta Pass circulation. 相似文献
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双组分调控系统（Two-component Regulatory System）在致病菌的生长及毒力调控中起重要作用.克隆溶藻弧菌（Vibrio alginolyticus）HY9901 株组氨酸激酶PhoR 和反应调控因子PhoB 的全长基因,并对其进行生物信息学分析.序列分析结果显示,phoR（GenBank 登录号：KJ958404）全长1 299 bp,共编码432 个氨基酸;phoB（GenBank 登录号：KJ863646）全长690 bp,编码229 个氨基酸.构建PhoR/PhoB 的系统进化树,结果显示,溶藻弧菌PhoR/PhoB 与副溶血弧菌（Vibrio parahaemolyticus）、哈氏弧菌（Vibrio harveyi）有较近亲缘关系.利用SWISS-MODEL 软件,对PhoR/PhoB 中两个相对保守的功能域HATPase_c 和REC 进行同源建模,发现HATPase_c具有1 个ATP 结合位点,REC 具有4 个天冬氨酸活性位点. 相似文献
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Shuo Li Chunmei Li Xubo Wang Yanan Wang Zhipeng Liu Teng Zhai Quanqi Zhang 《中国海洋大学学报(英文版)》2010,9(1):59-64
A novel immune-related gene was expressed in Japanese flounder (Paralichthys olivaceus) injected with Vibrio anguillarum. The complete cDNA contained a 169 bp 5’UTR, a 336 bp open reading frame (ORF) encoding 111 amino acids and a 556bp 3’UTR.
Six exons and five introns were identified in the PoIR2 gene. Blastp similarity comparison showed its encoding protein had 50% similarity to Danio rerio neuromedin S (NMS), but further alignment indicated they did not have NMS C-terminal conservational signature domain. So
it was not defined as an NMS homologue. Protein structure analysis indicated it had a 26aa signal peptide and was a secretory
pathway protein. RT-PCR demonstrated that the expression of PoIR2 was quickly induced and drastically increased in liver, kidney, spleen, gills, intestine, heart, and skeletal muscle after
infected with V. anguillarum. These results indicated that the PoIR2 might play some important role in Japanese flounder immune response system. This gene was named PoIR2 (P.olivaceus immune-related gene 2, GenBank accession number: EU224372). The mature PoIR2 peptide was expressed in BL21(DE3) pLysS using pET-32a(+) vector and a great part of the recombinant mature peptide existed
as soluble type. 相似文献
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In this report, complete mitochondrial genome sequences of Laminaria cultivation variety ‘Rongfu’ were obtained. The results showed the length of circular molecule of mtDNA was 37 638 bp (64.7%
A+T), encoding three rRNAs (23S, 16S and 5S), 25 tRNAs, 35 known mitochondrial proteins and 3 ORFs. Sequence alignment indicated
its mtDNA genome was very similar to that of Laminaria japonica. Phylogenetic trees inferred from concatenated 30 mitochondrial genes showed that ‘Rongfu’, Laminaria japonica, Laminaria longipedalis, Laminaria diabolica, Laminaria religiosa and Laminaria ochotensis clustered together. In addition, compared with mitochondrial genome of L. japonica, ‘Rongfu’ mtDNA lacked a non-coding region of 19 nucleotides, which was located between rRNA small subunit gene 3 (rps3) and rRNA small subunit gene 9 (rps9). Seven cultivation varieties of China were divided into two groups based on this non-coding region which was absent in
‘Rongfu’, ‘Fujian’ and ‘Sanhai’ while present in ‘Ailunwan’, ‘Dongfang No.2’, ‘Dongfang No.3’ and ‘Zaohoucheng’. So this variation
can be used in germplasm identification of cultivation variety. 相似文献
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LIU Hongquan ) ) YU Wengong ) * DAI Jixun ) GONG Qianhong ) SHI Xiaochong ) YANG Kunfeng ) ) Institute of Marine Drugs Foods Ocean University of China Qingdao P..R.China ) College of Marine Life Sciences Ocean University of China Qingdao P..R.China 《中国海洋大学学报(英文版)》2004,3(1)
1 Introduction PorphyraisthemainobjectforalgafarmingandplaysaveryimportantroleinChinesemarineindus tries.Recently ,therehasbeenagreatlossinPor phyracultivationduetothedegenerationoftheculti var,sothereisanincreasingdemandforgoodPor phyracultivars .Theprerequisiteofthetraditionalbreed ingandbioengineeringresearchofPorphyraistheconstructionofpurelines .Traditionally ,theclassifi cationofPorphyrawasaccordingtotheirmorphologi calcharacteristics .However ,mostmorphologicalfea turesofPorphyraar… 相似文献
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Interannual variability of transport and bifurcation of the North Equatorial Current in the tropical North Pacific Ocean 总被引：1，自引：0，他引：1
The relationship of the interannual variability of the transport and bifurcation latitude of the North Equatorial Current (NEC) to the El Ni o-Southern Oscillation (ENSO) is investigated. This is done through composite analysis of sea surface height (SSH) observed by satellite altimeter during October 1992-July 2009, and correspondingly derived sea surface geostrophic currents. During El Nio/La Ni a years, the SSH in the tropical North Pacific Ocean falls/rises, with maximum changes in the region 0-15°N, 130°E-160°E. The decrease/increase in SSH induces a cyclonic/anticyclonic anomaly in the western tropical gyre. The cyclonic/anticyclonic anomaly in the gyre results in an increase/decrease of NEC transport, and a northward/southward shift of the NEC bifurcation latitude near the Philippine coast. The variations are mainly in response to anomalous wind forcing in the west-central tropical North Pacific Ocean, related to ENSO events. 相似文献
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LIU Jinxian) ) GAO Tianxiang) WANG Yujiang) and ZHANG Yaping) ) The Key Laboratory of Mariculture Ministry of Education Ocean University of China Qingdao P.R.China ) Laboratory of Molecular Evolution Genome Diversity Kunming Institute of Zoology Chinese Academy of Sciences Kunming P. R. China 《中国海洋大学学报(英文版)》2005,4(1):85-88
1Introduction Japanese grenadier anchovy,Coilia ectenes Jordanet Seale(1905),is distributed in the northwest Pacif-ic.The congener,Osbeck's grenadier anchovy,Coil-ia mystus(Linnaeus,1758),is widely distributed inthe west Pacific.Both species inhabit coastal watersand estuaries and can reach up to rivers.The twospecies are important contributors to the coastal fish-eries of China(Zheng et al.,2003).Many studies on the fishery biology of the twospecies have been conducted(Zheng et al.,2003)… 相似文献
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WANG Lei MA Teng XU Wenteng CHEN Zhangfan ZHOU Qian ZHENG Guiliang CHEN Songlin 《中国海洋大学学报(英文版)》2021,(2)
Interferon-induced protein with tetratricopeptide repeats 1(IFIT1), also known as interferon-induced protein 56(IFI56) or Interferon-stimulated protein 56(ISG56), was originally identified as a protein induced upon treatment with interferon and inhibited by viral replication and translational initiation. In this study, Epinephelus lanceolatus IFIT1(ELIFIT1) gene was cloned for the first time. The complete cDNA of El IFIT1 gene includes 2921 nucleotides, and encodes a 437-amino acid(AA) protein. The putative ELIFIT1 protein has 9 TRP domains and is highly similar with IFIT1 proteins in other teleosts. In healthy fish, ELIFIT1 gene was highly expressed in the blood, which indicate its specific function in the peripheral immune system. Its expression was also observed in various immunity-related tissues including spleen, intestine, and kidney, Inducted with spotted knifejaw iridovirus(SKIV), ELIFIT1 gene expression was upregulated in the spleen, kidney, and liver 24 h after induction and reached its peak at 72 h, indicating that ELIFIT1 may play an important role in antivirus. These findings contribute to the understanding of the antiviral regulation of ELIFIT1 gene in teleost. 相似文献