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1.
辽河口沉积物反硝化过程研究 总被引：1，自引：0，他引：1
近年来，辽河口沿岸人类活动频繁，工农业活动发达，大量的氮、磷等营养物质输入至感潮河段继而排放入海，导致辽河口水体富营养化程度加剧。沉积物区域是反硝化作用的重要发生地和微生物富集地。微生物能够将沉积物中的硝酸盐及亚硝酸盐还原为N2O和N2释放到大气中，进而减轻河口生态系统氮负荷。本文中的实验采用定量PCR技术测定辽河口表层沉积物反硝化过程功能基因narG、nirK、norB、nosZ的基因丰度，结果表明，主导硝酸盐还原的narG功能基因丰度最高。使用高通量测序技术对nirK型功能基因进行测序，结果显示，在辽河口反硝化细菌中Devosia、Phaeobacter、Alcaligenes、Pseudomonas菌属丰度较高。反硝化功能基因的丰度主要受到沉积物粒径的影响，norB基因丰度与多个环境因子显著相关。nirK型反硝化细菌的群落结构和多样性主要受盐度、pH、溶解氧以及NO2?的影响。研究分析了反硝化功能基因丰度和细菌群落结构及其主要影响因子，其结果为辽河口水体富营养化中氮元素归趋的认知提供理论依据。 相似文献
2.
通过高通量测序考察了不同月份青岛海泊河污水处理厂缺氧池中微生物群落的动态变化。研究结果表明,在8和10月缺氧池中微生物群落丰度较高,1月缺氧池污泥中微生物群落丰度较小。缺氧池微生物群落多样性在12月较高,在6月微生物群落多样性较小。不同月份缺氧池中共有分类操作单元(OTU)中占优势地位的门包括Proteobacteria(42.3%)、Bacteroidetes(21.0%)、Chloroflexi(6.5%)、Firmicutes(6.3%)、Actinobacteria(4.0%)和Planctomycetes(3.8%),大部分微生物一直存在于缺氧池中。污泥样品中微生物群落的主成分分析和主坐标分析表明,8和10月缺氧池中微生物群落比较相似,但与1月污泥样品中的微生物群落之间存在着明显的差异。进水水质和环境温度的变化导致在门、纲和属水平上缺氧池内微生物的种类和相对丰度在不同月份呈现明显的变化。 相似文献
3.
文章通过荧光显微分析和分子生物学分析方法,对斯瓦尔巴群岛周边海域微型浮游生物群落中的浮游细菌丰度、微型浮游植物丰度及优势种进行了重点调查,分析了微型浮游生物群落与海洋环境之间的相关性。结果表明,浮游细菌的丰度为4.2×105～1.2×106cells/ml,微型浮游植物的丰度为2.7×103～4.1×104cells/ml;微型浮游植物优势种包括微胞藻、微型海链藻和微型角毛藻。冰川融水会给附近海域带来陆源微生物,并在一定程度上促进微型浮游植物的生长,而海冰的存在和低温则是导致微型浮游生物丰度较低的主因。北冰洋升温和海冰(冰川)消融会导致海洋浮游生物群落的微型化,这种趋势会明显影响大型海洋生物对它们的利用效率,从而影响整个北冰洋海洋生态系统。 相似文献
4.
红树植物根际土壤微生物对近海生物地球化学循环及其生物多样性等起着重要作用,受地上部和土壤性质影响,两种不同药用红树植物桐花树（Aegiceras corniculatum）和老鼠簕（Acanthus ilicifolius）根际土壤微生物群落组成可能存在独特性。本研究分别以细菌 16S rRNA基因和真菌ITS 基因为分子标记,采用高通量测序技术分析比较了桐花树和老鼠簕根际土壤微生物多样性特征及其与土壤理化性质之间的关系。结果表明：①老鼠簕根际土壤细菌和真菌多样性与丰富度均显著高于桐花树,且两者之间的细菌和真菌组成皆存在明显差异（P<0.05）;②两者根际土壤细菌和真菌门和属的优势（大于1%）物种组成皆相似;在门水平,桐花树根际土壤主要优势物种变形菌门（Proteobacteria）和未分类门（unclassified_k_Fungi）的相对丰度显著高于老鼠簕,而拟杆菌门（Bacteroidota）、脱硫杆菌门（Desulfobacterota）、子囊菌门（Ascomycota）和担子菌门（Basidiomycota）则相反;在属水平,桐花树的主要优势物种硝化螺菌属（Nitrospira）和Denitromonas属的相对丰度显著高于老鼠簕,而枝孢菌属（Cladosporium）和囊状担子菌属（Cystofilobasidium）则相反;③桐花树根际土壤pH、总碳和总酚含量皆显著高于老鼠簕,pH和总酚显著影响细菌群落组成,而总碳和总硫则显著影响真菌群落组成;此外,pH、总碳和总氮是影响细菌物种的主要因素,而总酚、pH和总碳是影响真菌物种的主要因素。本研究揭示了桐花树和老鼠簕根际土壤细菌和真菌多样性存在明显差异并与土壤理化性质密切相关,可为今后从不同红树物种所具备的独特功能根际微生物菌群来开发相关资源及保护近海的生态环境提供新的视角。 相似文献
5.
富钴结壳是一种重要的海底矿产资源.富钴结壳是生物地球化学和微生物学的研究热点,但目前我们对富钴结壳区的微生物群落结构仍缺乏认识.本研究针对中太平洋海山富钴结壳区沉积物,采用非培养方法获得微生物基因组信息并分析其生态学功能.采用PCR的方法筛选得到78个带有16S rRNA基因的克隆.变形杆菌门和奇古菌门MGI类群分别为古菌和细菌的主要类群.测序并分析了9个带有16S rRNA 基因的fosmid克隆.这些克隆中含有较多的代谢相关和重金属抗性相关基因,表明多样的代谢和抗逆途径在微生物适应富钴结壳环境中发挥了重要作用.代谢途径分析表明,氮循环是富钴结壳区一种重要的生物地球化学过程.此外,发现多个水平基因转移事件,这些基因大部分转移自细菌,少量转移自古菌或植物.比较基因组分析表明,属于奇古菌门MGI类群的克隆W4-93包含一段共线性的基因簇.以上结果说明水平基因转移和基因组分歧进化在微生物适应深海环境过程中发挥了重要作用. 相似文献
6.
珠江口表层沉积物nirS型反硝化微生物多样性 总被引：1，自引：0，他引：1
本研究以nirS基因为分子标记,将PCR、克隆文库构建与测序和典范对应分析相结合,对珠江口表层沉积物nirS型反硝化微生物的群落多样性进行了研究。3个站位共获得180个nirS基因克隆子,隶属于62个OTUs,氨基酸序列的相似性在50%—100%之间。各站位OTU分布格局差异明显,范围在19—33之间,表现出高度的多样性。系统进化分析表明,62个OTUs形成了5个类群,分别与河口、海洋沉积物、海岸养殖排放废水、富营养化海湾及海水养殖沉积物等的反硝化微生物聚类在一起,表明珠江口作为海淡水交汇区具有独特的反硝化微生物群落分布格局,同时也指示了珠江口氮污染及富营养化程度。典范对应分析结果表明,盐度、氮相关营养盐水平(PON/TN、NH4-N、NO-N和NO-N)可能是影响其分布格局的重要因素。 相似文献
7.
山东省渤海海洋保护区典型海域表层海水微生物群落多样性分析 总被引：3，自引：1，他引：2
海洋微生物在生态系统循环中发挥重要作用。为系统了解山东省渤海海洋保护区表层海水微生物群落多样性,作者利用Illumina高通量测序及生物信息学分析技术研究了12个水体样本的菌群构成和多样性特征。实验结果表明,山东渤海海洋保护区典型海域表层海水微生物群落丰富,12个水体样品OTU分属于25门、56纲、103目、163科、227属;门、纲、目、科、属分类等级上的优势类群分别为变形菌门(Proteobacteria)(57.95%)、α-变形菌纲(Alphaproteobacteria)(21.88%)、黄杆菌目(Flavobacteriales)(4.31%)、红细菌科(Rhodobacteraceae)(10.68%)、Candidatus portiera(7.94%);保护区内表层海水微生物具有其独特的菌群特征和多样性。本研究结果为进一步认识海洋微生物多样性与海洋生态环境保护的关系奠定了基础。 相似文献
8.
海洋沉积物中的甲烷代谢微生物是甲烷循环的关键参与者,其代谢过程对大气甲烷浓度及全球气候变化具有显著影响,研究其在全球大洋沉积物中的组成及分布特征是探究微生物介导甲烷循环的基础。采用焦磷酸454高通量测序测定甲烷代谢保守功能基因mcrA(Methyl coenzyme–M reductase A)分析全球大洋沉积物中甲烷代谢微生物群落的组成和多样性;结合荧光实时定量PCR技术检测了古菌和甲烷代谢古菌的丰度分布特征。与其他海洋生境对比,大洋沉积物中甲烷代谢古菌群落结构单一,大西洋和印度洋的α多样性指数显著高于太平洋(p<0.05)。在大洋沉积物样品中鉴定到3个目的甲烷代谢古菌,即甲烷杆菌目(Methanobacteriales)、甲烷八叠球菌目(Methanosarcinales)和甲烷微菌目(Methanomicrobiales),其中甲烷微菌目占绝对优势,并主要由一簇未知类群(暂名Oceanic Sediments Dominant group,OSD group)组成。大洋沉积物的古菌16S rRNA基因丰度(湿重,下同)平均为8.81×106 copie... 相似文献
9.
应用分子生态学方法, 研究在不同芳香族化合物胁迫下海洋沉积物中细菌群落结构的演替 规律。在实验室建立驯化系统, 在海洋沉积物中分别添加芘和苯甲酸钠, 采用Illumina MiSeq 高通量 测序技术分析实验组和对照组细菌群落16S rRNA 基因V3-V4 可变区数量的组成及变化, 研究沉积物 中添加芘、苯甲酸钠后, 微生物群落多样性和群落结构的变化。实验结果表明: 芘、苯甲酸钠极大地 降低了海洋沉积物中菌群丰度和多样性; 在添加苯甲酸钠的实验组, 变形杆菌门中海杆菌属 (Marinobacter)、假海源菌属(Pseudidiomarina)的细菌显著富集; 在添加芘实验组中拟杆菌门中的 Balneola 属、碳酸噬胞菌属(Aequorivita)极大富集。初步分析了在海洋沉积物环境中不同多环芳烃胁迫 下细菌群落结构的演替特征, 实验结果为海洋环境中针对不同芳香烃的微生物修复提供理论依据。 相似文献
10.
北极深海沉积物中细菌和古菌群落结构研究 总被引：3，自引：0，他引：3
在北极深海沉积物生态系统中,微生物的群落结构由有机质输入、能量的可用性及其他环境因素决定.然而,全球气候变暖及其导致的冰盖提前融化正在影响微生物的多样性.为描述北极深海沉积物中的微生物群落结构及其与环境因素的相关性,我们利用罗氏454对北极深海沉积物样品的16S rDNA扩增子进行了测序,对细菌和古菌群落的丰富度、成分、结构及其系统发育分类地位进行了描述.硫还原和化能有机营养类是细菌群落中的主要类群;而古细菌群落主要是由微生物的关系最为密切的氨氧化奇古菌门(96.66%)和产甲烷古生菌界(3.21%).这项研究描述了北极极点附近深海沉积物(> 3500米)中的微生物多样性,将为以后研究类似环境中微生物代谢过程和途径等功能分析奠定基础. 相似文献
11.
Harboring polyextremotolerant microbial topsoil communities, biological soil crusts(biocrusts) occur across various climatic zones, and have been well studied in the terrestrial drylands. However, little is known about the functional metabolic potential of microbial communities involved in the biogeochemical processes during the early succession of biocrusts on the tropical reef islands. We collected 26 biocrusts and bare soil samples from the Xisha Islands and Nansha Islands, and applied a functional gene array(GeoChip 5.0) to reveal nitrogen(N)cycling processes involved in these samples. Both physicochemical measurement and enzyme activity assay were utilized to characterize the soil properties. Results revealed the composition of N-cycling functional genes in biocrusts was distinct from that in bare soil. Additionally, microorganisms in biocrusts showed lower functional potential related to ammonification, denitrification, N assimilation, nitrification, N fixation, and dissimilatory nitrate reduction to ammonium compared to bare soils. Although the abundance of nifH gene was lower in biocrusts, nitrogenase activity was significantly higher compared to that in bare soils. Precipitation, soil physicochemical properties(i.e., soil available copper, soil ammonia N and pH) and soil biological properties(i.e., β-glucosidase, fluorescein diacetate hydrolase, alkaline protease, urease, alkaline phosphatase, catalase and chlorophyll a) correlated to the N-cycling functional genes structure. Nitrate N and ammonia N were more abundant in biocrusts than bare soil, while pH value was higher in bare soil. Our results suggested biocrusts play an important role in N-cycling in coral sand soil, and will be helpful in understanding the development and ecological functions of biocrusts on tropical reef islands. 相似文献
12.
辽河口区域丰富的生物多样性在生物地球化学循环和维持生态系统功能等方面发挥着极其重要的作用。研究辽河口表层沉积物中参与常见地球化学循环的功能基因及其关键影响因子,对揭示和预测辽河口沉积物微生物的功能代谢潜力和受环境变化的影响具有重要意义。应用功能基因芯片(GeoChip 4.0)技术开展微生物功能基因多样性研究。结果表明:在6个沉积物样品中,检测到各类型功能基因48742个,反映了9个微生物介导的关键生物过程。其中,碳循环相关功能基因最多,其次是氮循环和硫循环,而磷循环相关功能基因较少。各站位生物过程相关的功能基因数量和荧光信号值整体呈由远海到近海上升的趋势,即河相区的微生物功能基因较海相区与混合区普遍丰富。碳循环中参与碳固定的基因荧光信号值最高。氮循环中反硝化功能基因荧光信号值最高。总磷与硝酸盐是影响微生物功能基因多样性分布格局的重要因素。该研究有助于了解环境变化对辽河口沉积物生态系统结构和功能的影响,为研究辽河口表层沉积物微生物介导的生物地球化学循环提供科学依据。 相似文献
13.
Namirimu Teddy Park Mi-Jeong Kim Yun Jae Lim Dhongil Lee Jung-Hyun Shin Ayoung Kim Dongsung Kwon Kae Kyoung 《Ocean Science Journal》2023,58(2):1-15
Since the discovery of hydrothermal vents in the late 1970s, deep-sea hydrothermal vent fields have attracted great attention as biological hotspots. However, compared with other ocean ridges, the structure and function of microbial communities inhabiting vent fields in the Central Indian ridge (CIR) remain understudied. Here, we provide for the first time 16S rRNA gene-based comparative metagenomic analysis of the sediment-associated microbial communities from three newly discovered vent fields in the CIR. Sediment samples collected in the Invent B, Invent E and Onnuri vent fields varied in geochemical properties, elemental concentrations and associated microbial communities. Proteobacteria (Gammaproteobacteria) was the dominant phylum in Invent B and Onnuri vent fields. In contrast, Invent E mainly consisted of Chloroflexi and Euryarchaeota. Predicted functional profiling revealed that the microbial communities in the three vents are dominated by chemoheterotrophic functions. In addition, microbial communities capable of respiration of sulfur compounds, nitrification, nitrite oxidation, methylotrophy, and methanotropy were found to be the main chemolithoautotrophs. Compared to other vent fields, Invent E showed a predominance of archaeal methanogens suggesting it exhibits slightly different geochemistry. Multivariate analysis indicated that the biogeochemical and trace metal differences are reflected in the sediment microbial compositions of the three vent fields. This study expands our current understanding of the microbial community structure and potential ecological functions of the newly discovered hydrothermal vent fields in the CIR.
相似文献14.
《Deep Sea Research Part II: Topical Studies in Oceanography》2010,57(16):1519-1536
This paper synthesizes recent findings regarding microbial distributions and processes in the bathypelagic ocean (depth >1000 m). Abundance, production and respiration of prokaryotes reflect supplies of particulate and dissolved organic matter to the bathypelagic zone. Better resolution of carbon fluxes mediated by deep microbes requires further testing on the validity of conversion factors. Archaea, especially marine Crenarchaeota Group I, are abundant in deep waters where they can fix dissolved inorganic carbon. Viruses appear to be important in the microbial loop in deep waters, displaying remarkably high virus to prokaryote abundance ratios in some oceanic regions. Sequencing of 18S rRNA genes revealed a tremendous diversity of small-sized protists in bathypelagic waters. Abundances of heterotrophic nanoflagellates (HNF) and ciliates decrease with depth more steeply than prokaryotes; nonetheless, data indicated that HNF consumed half of prokaryote production in the bathypelagic zone. Aggregates are important habitats for deep-water microbes, which produce more extracellular enzymes (on a per-cell basis) than surface communities. The theory of marine gel formation provides a framework to unravel complex interactions between microbes and organic polymers. Recent data on the effects of hydrostatic pressure on microbial activities indicate that bathypelagic microbial activity is generally higher under in situ pressure conditions than at atmospheric pressures. High-throughput sequencing of 16S rRNA genes revealed a remarkable diversity of Bacteria in the bathypelagic ocean. Metagenomics and comparative genomics of piezophiles reveal not only the high diversity of deep sea microbes but also specific functional attributes of these piezophilic microbes, interpreted as an adaptation to the deep water environment. Taken together, the data compiled on bathypelagic microbes indicate that, despite high-pressure and low-temperature conditions, microbes in the bathypelagic ocean dynamically interact with complex mixtures of organic matter, responding to changes in the ocean’s biogeochemical state. 相似文献
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16.
N. D. Romanova Yu. A. Mazei D. V. Tikhonenkov A. F. Sazhin A. I. Azovsky 《Oceanology》2013,53(3):334-344
The qualitative and quantitative characteristics of the heterotrophic microbial communities (bacteria, flagellates, and ciliates) in the thin water-sediment layer in the Kara Sea are analyzed. The bacterial abundance correlated with the concentration of organic matter, whereas their size depended on the abundance of heterotrophic flagellates. The number of species of heterotrophic flagellates increased with the increase in the bacterial number. A positive relationship between the bacterial abundance and the ration of heterotrophic flagellates was observed at the offshore stations, probably due to the grazing pressure. The density of the ciliates on the soft silty and sandy-silty sediments was extremely low. The share of upstream filter feeding ciliate species increased with the increase in the abundance of the flagellates, probably due to the shift to less selective feeding strategies at higher values of the food concentrations. The classification of the heterotrophic microbial communities in the surface sediment layer has revealed two distinct types of the communities. The river communities are rich in species and are characterized by the high abundance of microorganisms. They are gradually replaced by marine communities at the salinity of 9%. 相似文献
17.
Although large loads of potentially toxic constituents are discharged from coastal urban watersheds, very little is known about the fates and eventual impacts of these stormwater inputs once they enter the ocean. The goal of this study was to examine the effects of stormwater discharges on the benthic marine environment of Santa Monica Bay. Sediment samples were collected across a gradient of stormwater impact following significantly sized storm events offshore Ballona Creek (a predominantly developed watershed) and Malibu Creek (a predominantly undeveloped watershed). Sediments offshore Malibu Creek had a greater proportion of fine-grained sediments, organic carbon, and naturally occurring metals (i.e., aluminum and iron), whereas sediments offshore Ballona Creek had higher concentrations of anthropogenic metals (i.e., lead) and organic pollutants (i.e., total DDT, total PCB, total PAH). The accumulation of anthropogenic sediment contaminants offshore Ballona Creek was evident up to 2 km downcoast and 4 km upcoast from the creek mouth and sediment concentrations covaried with distance from the discharge. Although changes in sediment texture, organic content, and an increase in sediment contamination were observed, there was little or no alteration to the benthic communities offshore either Ballona or Malibu Creek. Both sites were characterized as having an abundance, species richness, biodiversity and benthic response index similar to shallow water areas distant from creek mouths throughout the Southern California Bight. There was not a preponderance of pollution tolerant, nor a lack or pollution sensitive, species offshore either creek mouth. 相似文献
18.
Ho Il Yoon Myung Woo Han Byong-Kwon Park Jae-Kyung Oh Soon-Keun Chang 《Marine Geology》1997,140(3-4):265-282
High-resolution (3.5 kHz and multi-channel) seismic profiles and piston cores were collected from Maxwell Bay and its tributary embayment, Marian Cove, in the South Shetland Islands, Antarctica, during the Korea Antarctic Research Program (1992/93 and 1995/96) to elucidate the glaciomarine sedimentation processes and recent glacial history of the area. Seismic data from Maxwell Bay reveal a rugged bay margin and flattened basin floor covered with well-stratified hemipelagic muds. On the base-of-slope, acoustically transparent debris flows occur, indicating downslope resedimentation of glaciomarine sediments. Despite the subpolar and ice-proximal settings of Marian Cove, the seafloor is highly rugged with a thin sediment drape, suggesting that much of the area has been recently eroded by glaciers. Sediment cores from the cove penetrated three distinct fining-upward lithofacies: (1) basal till in the lower part of the core, accumulated just seaward of the grounding line of the tidewater glacier; (2) interlaminated sand and mud in the middle part, deposited in ice-proximal zone by a combination of episodic subglacial meltwater inflow and iceberg dumping; and (3) pebbly mud in the upper part, deposited in ice-distal zone by both surface meltwater plume and ice-rafting from the glacier front. A reconstruction of the glacial history of these areas since the late glacial maximum shows an ice sheet filling Maxwell Bay in late Wisconsin time and grounding of the tidewater glacier in Marian Cove until about 1300 yr BP. 相似文献
19.
为揭示富集传代培养过程中南极多环芳烃降解菌群的演替规律,以菲为唯一碳源和能源对南极菲尔德斯半岛不同地理位置的6份土壤样品进行了富集和连续传代培养,并采用高通量测序技术分析了富集传代培养过程中菲降解菌群的群落结构及生物多样性。Alpha多样性分析结果表明,在富集培养阶段南极菲降解菌的物种丰富度显著高于传代培养阶段(P0.05),但传代培养阶段的代际物种丰富度无显著差异(P0.05)。Beta多样性分析结果表明富集培养阶段与传代培养阶段的群落结构具有显著性差异(P0.05),但传代培养阶段菲降解菌群趋于相对稳定,代际间群落结构无显著性差异(P0.05)。大量微生物在富集培养阶段丰度较高,但因不能适应实验室培养条件或不能利用菲而在传代培养阶段被淘汰。反之,假单胞菌属(Pseudomonas)、鞘氨醇菌属(Sphingobium)、贪噬菌属(Variovorax)、甲基娇养杆菌属(Methylotenera)和产碱杆菌属(Alcaligenes)等适应了该选择压力并在传代培养阶段形成了动态平衡的优势种群。此外,Pseudomonas、Sphingobium和Variovorax等在富集传代培养过程中具有显著性差异的优势种在维持群落的动态平衡中也发挥着重要的作用。该研究有助于加深人们对南极土壤环境中持久性有机污染物的降解潜力以及关键微生物动态变化的认识,为下一步充分挖掘利用南极环保功能微生物资源提供重要的依据。 相似文献