Modeling the impact of microbial activity on redox dynamics in porous media     

Martin Thullner  Philippe Van Cappellen  Pierre Regnier 《Geochimica et cosmochimica acta》2005,69(21):5005-5019

The present study investigates the interaction between microbial growth and activity and the redox dynamics in natural porous media. The impact the transport regime has on this interaction is also addressed. Expressions for microbial growth are incorporated into a geochemical reaction network linking redox reaction rates to the activity of the microorganisms. A flexible simulation environment, the Biogeochemical Reaction Network Simulator (BRNS) is used for this purpose. Two reactive transport applications relevant to fields of contaminant hydrology and early diagenesis are simulated with the BRNS. Model results are evaluated based on a comparison with comprehensive datasets on the biodegradation of lactate in a sand column experiment and on the distribution of redox-sensitive chemical species in marine sediments of the Skagerrak, Denmark. It is shown that, despite quite different transport regimes, the geomicrobiological model performs equally well in the reproduction of measured chemical species distribution for both applications. This result emphasizes the broad applicability of the proposed approach. Our simulations support that the competitive behavior between various microbial groups is a process controlling the development of redox stratified environments. Furthermore, it is also shown that the transport regime is a key controlling factor for the degree of spatial correlation between microbial biomass distributions and redox reaction rates. Although all our simulations yield a pronounced stratification of the redox processes in the system, the biomass distribution is related to the associated reaction rates only in case of the advection controlled column experiment. In the early diagenetic application, mixing due to bioturbation is the dominant transport process for particulate matter, hence leading to fairly homogeneous distribution of bacterial biomasses which are unrelated to the spatial distribution of redox reaction rates. This homogeneous biomass distribution combined with the 1G carbon degradation model approach might explain why the steady state concentration profiles in such systems can be reproduced by diagenetic models without explicit representation of microbial growth.  相似文献   

Correction to: Future changes in Atlantic hurricanes with the rotated-stretched ARPEGE-Climat at very high resolution     

Chauvin  Fabrice  Pilon  Romain  Palany  Philippe  Belmadani  Ali 《Climate Dynamics》2021,56(1):683-685

Climate Dynamics - The original article can be found online.  相似文献   

An adaptive finite element model for wellbore breakout simulation     

Diogo L. Cecílio  Philippe R. B. Devloo  Sônia M. Gomes  Erick S.R. Santos 《国际地质力学数值与分析法杂志》2019,43(4):814-828

A finite element formulation is proposed and implemented for analysing the stability of excavated wells using the DiMaggio-Sandler constitutive elastoplastic model with a typical carbonate reservoir configuration. The quality of the finite element approximation is ensured by applying smooth curved elements adapted to the wellbore geometry, and h − p adaptive finite element meshes in the plastic zone. General purpose procedures are defined to transfer the elastoplastic deformation history to newly created integration points. A breakout damage criterion is proposed based on the second invariant of the deviatoric plastic deformation tensor. This damage criterion is used to apply a mesh movement algorithm to represent material collapse. The automatic successive application of the breakout damage criterion results in elliptical realistically looking geometries obtained in experiments reported in the literature.  相似文献   

Segmentation and kinematics of the North America‐Caribbean plate boundary offshore Hispaniola          下载免费PDF全文

Sylvie Leroy  Nadine Ellouz‐Zimmermann  Jordane Corbeau  Frédérique Rolandone  Bernard Mercier de Lépinay  Bertrand Meyer  Roberte Momplaisir  José‐Luis Granja Bruña  Anne Battani  Céline Baurion  Evgueni Burov  Valérie Clouard  Rémy Deschamps  Christian Gorini  Youri Hamon  Manfred Lafosse  Jottin Leonel  Laetitia Le Pourhiet  Pilar Llanes Estrada  Nicolas Loget  Francis Lucazeau  Daniel Pillot  Jeffrey Poort  Kevin R. Tankoo  José‐Luis Cuevas  José‐Fernando Alcaide  Claude Jean Poix  Alfonso Muñoz‐Martin  Serge Mitton  Yamil Rodriguez  Julien Schmitz  Leonardo Seeber  Andres Carbo‐Gorosabel  Santiago Muñoz 《地学学报》2015,27(6):467-478

We explored the submarine portions of the Enriquillo–Plantain Garden Fault zone (EPGFZ) and the Septentrional–Oriente Fault zone (SOFZ) along the Northern Caribbean plate boundary using high‐resolution multibeam echo‐sounding and shallow seismic reflection. The bathymetric data shed light on poorly documented or previously unknown submarine fault zones running over 200 km between Haiti and Jamaica (EPGFZ) and 300 km between the Dominican Republic and Cuba (SOFZ). The primary plate‐boundary structures are a series of strike‐slip fault segments associated with pressure ridges, restraining bends, step overs and dogleg offsets indicating very active tectonics. Several distinct segments 50–100 km long cut across pre‐existing structures inherited from former tectonic regimes or bypass recent morphologies formed under the current strike‐slip regime. Along the most recent trace of the SOFZ, we measured a strike‐slip offset of 16.5 km, which indicates steady activity for the past ~1.8 Ma if its current GPS‐derived motion of 9.8 ± 2 mm a^?1 has remained stable during the entire Quaternary.  相似文献   

A middle–late Ediacaran volcano‐sedimentary record from the eastern Arabian‐Nubian shield     

David Nettle  Galen P. Halverson  Grant M. Cox  Alan S. Collins  Mark Schmitz  James Gehling  Peter R. Johnson  Khalid Kadi 《地学学报》2014,26(2):120-129

The Ediacaran Jibalah Group comprises volcano‐sedimentary successions that filled small fault‐bound basins along the NW–SE‐trending Najd fault system in the eastern Arabian‐Nubian Shield. Like several other Jibalah basins, the Antaq basin contains exquisitely preserved sedimentary structures and felsic tuffs, and hence is an excellent candidate for calibrating late Ediacaran Earth history. Shallow‐marine strata from the upper Jibalah Group (Muraykhah Formation) contain a diversity of load structures and intimately related textured organic (microbial) surfaces, along with a fragment of a structure closely resembling an Ediacaran frond fossil and a possible specimen of Aspidella. Interspersed carbonate beds through the Muraykhah Formation record a positive δ¹³C shift from ?6 to 0‰. U‐Pb zircon geochronology indicates a maximum depositional age of ~570 Ma for the upper Jibalah Group, consistent with previous age estimates. Although this age overlaps with that of the upper Huqf Supergroup in nearby Oman, these sequences were deposited in contrasting tectonic settings on opposite sides of the final suture of the East African Orogen.  相似文献   

Modeling defects and plasticity in MgSiO3 post-perovskite: Part 1—generalized stacking faults     

Alexandra M. Goryaeva  Philippe Carrez  Patrick Cordier 《Physics and Chemistry of Minerals》2015,42(10):781-792

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Internal erosion in granular media: direct numerical simulations and energy interpretation          下载免费PDF全文

Luc Sibille  Franck Lominé  Philippe Poullain  Yacine Sail  Didier Marot 《水文研究》2015,29(9):2149-2163

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Simulation of site-scale water fluxes in desert and natural oasis ecosystems of the arid region in Northwest China     

Mingjuan Xie  Geping Luo  Olaf Hellwich  Amaury Frankl  Wenqiang Zhang  Chunbo Chen  Chen Zhang  Philippe De Maeyer 《水文研究》2021,35(12):e14444

The study of water fluxes is important to better understand hydrological cycles in arid regions. Data-driven machine learning models have been recently applied to water flux simulation. Previous studies have built site-scale simulation models of water fluxes for individual sites separately, requiring a large amount of data from each site and significant computation time. For arid areas, there is no consensus as to the optimal model and variable selection method to simulate water fluxes. Using data from seven flux observation sites in the arid region of Northwest China, this study compared the performance of random forest (RF), support vector machine (SVM), back propagation neural network (BPNN), and multiple linear regression (MLR) models in simulating water fluxes. Additionally, the study investigated inter-annual and seasonal variation in water fluxes and the dominant drivers of this variation at different sites. A universal simulation model for water flux was built using the RF approach and key variables as determined by MLR, incorporating data from all sites. Model performance of the SVM algorithm (R² = 0.25–0.90) was slightly worse than that of the RF algorithm (R² = 0.41–0.91); the BPNN algorithm performed poorly in most cases (R² = 0.15–0.88). Similarly, the MLR results were limited and unreliable (R² = 0.00–0.66). Using the universal RF model, annual water fluxes were found to be much higher than the precipitation received at each site, and natural oases showed higher fluxes than desert ecosystems. Water fluxes were highest during the growing season (May–September) and lowest during the non-growing season (October–April). Furthermore, the dominant drivers of water flux variation were various among different sites, but the normalized difference vegetation index (NDVI), soil moisture and soil temperature were important at most sites. This study provides useful insights for simulating water fluxes in desert and oasis ecosystems, understanding patterns of variation and the underlying mechanisms. Besides, these results can make a contribution as the decision-making basis to the water management in desert and oasis ecosystems.  相似文献   

How does large-scale nudging in a regional climate model contribute to improving the simulation of weather regimes and seasonal extremes over North America?     

Philippe Lucas-Picher  Julien Cattiaux  Alexandre Bougie  René Laprise 《Climate Dynamics》2016,46(3-4):929-948

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Occurrence,durée et intensité des précipitations simulées par deux modèles régionaux canadiens du climat sur la région du Maghreb     

Mariem Jelassi  Philippe Gachon  René Laprise 《大气与海洋》2016,54(5):469-497

[Translated by the editorial staff] Simulating the precipitation regime of Northern Africa is challenging for regional climate models, particularly because of the strong spatial and temporal variability of rain events in the region. In this study we evaluate simulations conducted with two recent versions of regional climate models (RCM) developed in Canada: the CRCM5 and CanRCM4. Both are also used in the COordinated Regional Climate Downscaling EXperiment (CORDEX)-Africa. The assessment is based on the occurrence, duration, and intensity indices of daily precipitation in Maghreb during the fall and spring seasons from 1998 to 2008. We also examine the links between the North-Atlantic Oscillation (NAO) index, weather systems, and the precipitation regime over the region. During the rainy season (September to February), the CRCM5 reproduces the frequency and intensity of extreme precipitation adequately, as well as the occurrence of days with rain, while the CanRCM4 underestimates precipitation extremes. The study of links between weather systems and the precipitation regime shows that, along the Atlantic coast, precipitation (occurrence, intensity, and wet sequences) increases significantly with storm frequency in the fall. In winter, these links grow stronger going east, from the Atlantic coast to the Mediterranean coast. The negative phases of the NAO index are statistically associated with the increase in rain intensity, extremes, and accumulation along the Atlantic coast in the fall. However, the link weakens in winter over these regions and strengthens along the Mediterranean coast as the precipitation frequency rises during negative phases of the NAO. Both RCMs generally reproduce the links between the NAO and the precipitation regime well, regardless of location.  相似文献