黄颡鱼(Pelteobagrus eupogon)不同生态地理分布群体遗传多样性的微卫星分析   总被引：1，自引：0，他引：1  

李大宇  殷倩茜  侯宁  孙效文  梁利群 《海洋与湖沼》2009,40(4):460-469

利用40个黄颡鱼微卫星分子标记对吉林省月亮湖野生黄颡鱼(YL,30尾)、四川野生黄颡鱼(SC,30尾)、黑龙江省哈尔滨市松花江段黄颡鱼(SH,18尾)、湖北省荆州市长湖野生黄颡鱼子代(YY,30尾)及其亲本(QQ,30尾)、天津市换新国家级原良种场黄颡鱼1号(TJ,30尾)6个黄颡鱼群体的观测杂合度(Ho)、期望杂合度(He)、多态信息含量(PIC)和有效等位基因数(Ae)等进行了遗传检测,根据基因频率计算遗传相似系数和Nei氏标准遗传距离,x2检验估计Hardy-weinberg平衡,采用近交系数(FST)和基因流(Nm)分析群体的遗传分化及其来源.同时,使用PHYLIP3.63软件绘制基于Nei氏标准遗传距离的UPGMA进化树.6个群体共检测到5042个扩增片段,长度在150-650bp,40个基因座扩增出等位基因数从1-8个不等,共计143个等位基因,平均每个基因座扩增得到3.575个等位基因.结果显示:(1)6个黄颡鱼群体的多态性指标均适中,PIC在0.00-0.79之间,平均值为0.40、0.37、0.35、0.39、0.35和0.19,有效等位基因数(Ae)1.00-5.44个不等,平均有效等位基因数依次为2.05、2.30、1.93、2.07、1.93和1.47,无偏期望杂合度(He)在0.00-0.83之间,平均值为0.45、0.46、0.36、0.46、0.41和0.23;(2)遗传相似系数YY与QQ遗传相似度最高(0.9947),TJ与SC遗传相似系数最低(0.4846),聚类结果与地理分布呈一定相关性.  相似文献   

冬季刺参养殖环境与肠道内细菌菌群的研究   总被引：2，自引：0，他引：2  

李彬  荣小军  廖梅杰  陈贵平  张正  王印庚  薛太山 《海洋科学》2010,34(4):64-69

运用传统细菌分离培养与分子生物学技术相结合的方法,对2008年11月至2009年1月冬季刺参(Apostichopus japonicus Liao)养殖池塘环境(养殖水、底泥、附着基)及刺参肠道内的细菌菌群进行了分析。应用平板稀释涂布培养计数法测得刺参养殖池塘水体、底泥、附着基和肠道细菌数量分别为0.75×102～1.4×104cfu/mL、8.7×104～8.1×105cfu/g、3.8×105～2.8×106cfu/g、7.1×105～1.5×107cfu/g;根据形态学差异从培养所得的细菌中筛选得到22株菌,用限制性内切酶Rsa I和Msp I对所分离菌株进行ARDRA(Amplified rDNA Restriction Analysis)分析,这22株菌被分为8种不同的分类单元(Operational Taxonomic Unit,OTU),其中OTU2与OTU3所包含的菌株分别占分离菌株种数的30%和20%;此外,作者对不同环境培养所得的优势度最高的细菌进行分子鉴定分析。结果表明:水环境中优势菌为施氏假单胞菌(Pseudomonas stutzeri)、门多萨假单胞菌(Pseudomonas mendocina)及巨大芽孢杆菌(Bacillus megaterium),沉积物中优势菌为巨大芽孢杆菌(B.megaterium)、施氏假单胞菌(P.stutzeri)、苏云金芽孢杆菌(Bacillus thuringiensis),附着基中优势菌为巨大芽孢杆菌(B.megaterium)、苏云金芽孢杆菌(B.thuringiensis),灿烂弧菌(Vibrio splendidus),肠道中优势菌为巨大芽孢杆菌(B.megaterium)、苏云金芽孢杆菌(B.thuringiensis),灿烂弧菌(V.splendidus)、施氏假单胞菌(P.stutzeri)。通过对冬季刺参池塘细菌菌群多样性分析和优势菌鉴定,为筛选低温益生菌和防治刺参疾病提供了有益参考。  相似文献   

基于微卫星标记的三疣梭子蟹家系系谱认证   总被引：1，自引：0，他引：1  

刘磊  李健  刘萍 《中国海洋大学学报(自然科学版)》2012,(Z2):38-44

用6个微卫星标记对三疣梭子蟹(Portunus trituberculatus)的6个家系进行系谱鉴别和遗传多样性研究。6个微卫星标记在6个家系中显示了高度的遗传差异,6个位点的多态信息含量(PIC)分别为Pot09位点0.6045,Pot14位点0.6072,Pot17位点0.8130,Pot18位点0.6870,Pot25位点0.7839,Pot42位点0.6330。6个多态性位点共发现了32个等位基因,每个位点的等位基因数在4～8个之间。不同位点共发现7个家系特异性等位基因,2#和3#家系中各发现2个,1#、5#、6#家系中各发现1个,4#家系未发现特异性等位基因。根据已知亲本及子代基因型,可推断出6个家系中全部亲本的基因型,据此鉴别各家系。在Pot18位点可将1#家系和6#家系与其他家系相区别;Pot14位点和Pot17位点可将3#家系与其他家系相区别;Pot42位点可将5#与其他家系相区别;Pot17位点和Pot25可将2#家系与其他家系相区别。因此,Pot18位点、Pot14位点和Pot17位点、Pot42位点、Pot17位点和Pot25位点可分别用于鉴别1#和6#家系、3#、5#、2#家系的特异性标记。研究表明,在选用的6个微卫星标记中,最少选用3个标记可鉴别6个三疣梭子蟹家系。  相似文献   

笛鲷属(Lutjanus)鱼类线粒体16S rRNA基因序列比较及系统学分析   总被引：3，自引：2，他引：1  

刘楚吾  徐田军  刘丽  郭昱嵩  董秋芬 《海洋与湖沼》2009,40(5):563-571

对笛鲷属9种鱼的线粒体DNA16S rRNA基因片段进行了PCR扩增,扩增产物经纯化后测序,得到了长度为561bp的分析序列。结合GenBank中的另外9种笛鲷的16S rRNA同源序列计算得出A、T、G、C的含量平均为28.5%、22.1%、23.6%和25.8%,AT含量稍高于GC含量,18种笛鲷碱基组成差异不大。利用MEGA3.1软件对所得序列进行比对后检测到72个变异位点,其中包括简约信息位点44个,在变异位点中75.61%的碱基替换是由于发生了转换,转换/颠换平均为3.1︰1。计算了种间的遗传距离,结果表明,序列差异在0.0193-0.0680之间,其中勒氏笛鲷和金焰笛鲷、勒氏笛鲷和金带笛鲷的序列差异最小,而红鳍笛鲷和金焰笛鲷、红鳍笛鲷和画眉笛鲷的序列差异最大。选用高体四长棘鲷(Argyrops spinifer)为外群,利用NJ法构建了分子系统树,结果表明:本研究中的9种南海笛鲷与其它9种笛鲷进化关系较远;并且南海9种笛鲷相互之间仍然保持着着相对较远的遗传距离,遗传多样性较好。  相似文献   

ISSR 标记在牙鲆(Paralichthys olivaceus)与石鲽(Kareius bicoloratus)种间杂交一代的分离方式分析     

徐建鹏  张全启  王志刚  齐洁  王旭波 《海洋与湖沼》2009,40(5):622-626

利用ISSR标记对牙鲆♀与石鲽♂单对杂交亲本及其子一代(全同胞家系)的分离方式进行了研究。结果表明,8个ISSR引物共扩增出181个标记,其中116个为多态性,占总数的64.09%;标记在F1代呈三种分离方式:符合孟德尔分离比例、偏离孟德尔分离比例和异常分离。符合孟德尔分离比例的情况包括:不分离(代表了亲本基因型的5种组合:AA×AA、AA×Aa、Aa×AA、AA×aa、aa×AA);1︰1分离(代表了亲本基因型的2种组合:Aa×aa、aa×Aa);3︰1分离(代表了亲本基因型的1种组合:Aa×Aa)。偏分离的标记包括:亲本中呈多态而在子代中偏离1︰1分离的标记和亲本均有而在子代中偏离3︰1分离的标记。异常分离的标记包括:F1代出现双亲均不具备的标记和双亲或单亲有而子代却无的标记。3种分离位点出现的频率和数量分别为:82.87%、150,11.05%、20,6.08%、11;双亲共有标记中85.33%的不发生分离,单亲特有标记中28.57%—35.85%发生正常分离,该研究结果可为进一步利用该群体构建牙鲆和石鲽遗传连锁图谱奠定良好的工作基础并提供一定的理论依据。  相似文献   

Petroleum composition in the Cuu Long Basin (Mekong Basin) offshore southern Vietnam     

Jørgen A. Bojesen-Koefoed  H. Peter Nytoft  Nguyen Thi Dau 《Marine and Petroleum Geology》2009

The Cuu Long Basin (Mekong Basin) is a rift basin off southern Vietnam, and the most important petroleum producing basin in the country. However, information on petroleum type and characteristics has hitherto been largely unavailable to the public. This paper presents petroleum geochemical data on nine oil samples from four different producing fields in the Cuu Long Basin: the Dragon (Rong), Black Lion (Sutu-Den), Sunrise (Rang ?ong) and White Tiger (Bach Ho) Fields. The oils are highly paraffinic with bimodal normal alkane distributions and show moderate pristane to phytane ratios and a conspicuous hyperbolic decrease in abundance with increasing carbon number of hopane homologues from C₃₀ to C₃₅. The TPP-index of Holba et al. (Holba, A.G., Dzou, L.I., Wood, G.D., Ellis, L., Adam, P., Schaeffer, P., Albrecht, P., Greene, T., Hughes, W.B., 2003. Application of tetracyclic polyprenoids as indicators of input from fresh–brackish water environments. Organic Geochemistry 34, 441–469) is equal to 1 in all samples which in combination with tricyclic triperpane T26/T25 ratios >1 and the n-alkane and hopane distributions mentioned above provide a strong indication of an origin from lacustrine source rocks. This is supported by the absence of marine C₃₀ desmethyl steranes (i.e. 24-n-propylcholestanes) and marine diatom-derived norcholestanes. Based on the overall biological marker distributions, the lakes probably belonged to the overfilled or balanced-fill types defined by Bohacs et al. (Bohacs, K.M., Carroll, A.R., Neal, J.E., Mankiewicz, P.J., 2000. Lake-basin type, source potential, and hydrocarbon character. An integrated sequence-stratigraphic–geochemical framework. AAPG Studies in Geology 46, 3–34). The oils were generated from source rocks at early- to mid-oil-window maturity, presumably Oligocene lacustrine shales that are present in the syn-rift succession. Oils from individual fields may, however, be distinguished by a combination of biological marker parameters, such as the oleanane index, the gammacerane index, the relative abundance of tricyclic terpanes, the proportions of diasteranes and 28-norspergulane, complemented by other parameters. The oils of the Cuu Long Basin show an overall similarity to the B-10 oil from the Song Hong Basin off northern Vietnam, but are markedly different from the seepage oils known from Dam Thi Nai on the coast of central Vietnam.  相似文献   

Trace element and molecular markers of organic carbon dynamics along a shelf–basin continuum in sediments of the western Arctic Ocean     

Laura L. Belicka  Robie W. Macdonald  H. Rodger Harvey 《Marine Chemistry》2009,115(1-2):72-85

Molecular organic biomarkers together with trace element composition were investigated in sediments east of Barrow Canyon in the western Arctic Ocean to determine sources and recycling of organic carbon in a continuum from the shelf to the basin. Algal biomarkers (polyunsaturated and short-chain saturated fatty acids, 24-methylcholesta-5,24(28)-dien-3β-ol, dinosterol) highlight the substantial contribution of organic matter from water column and sea-ice primary productivity in shelf environments, while redox markers such as acid volatile sulfide (AVS), Mn, and Re indicate intense metabolism of this material leading to sediment anoxia. Shelf sediments also receive considerable inputs from terrestrial organic carbon, with biomarker composition suggesting the presence of multiple pools of terrestrial organic matter segregated by age/lability or hydrodynamic sorting. Sedimentary metabolism was not as intense in slope sediments as on the shelf; however, sufficient labile organic matter is present to create suboxic and anoxic conditions, at least intermittently, as organic matter is focused towards the slope. Basin sediments also showed evidence for episodic delivery of labile organic carbon inputs despite the strong physical controls of water depth and sea-ice cover. Principal components analysis of the lipid biomarker data was used to estimate fractions of preserved recalcitrant (of terrestrial origin) and labile (of marine origin) organic matter in the sediments, with ranges of 12–79%, 14–45%, and 37–66% found for the shelf, slope, and basin cores, respectively. On average, the relative preserved terrestrial organic matter in basin sediments was 56%, suggesting exchange of organic carbon between nearshore and basin environments in the western Arctic.  相似文献   

罗非鱼4个选育群体遗传结构SSR分析   总被引：2，自引：0，他引：2  

蒋家金  李瑞伟  叶富良 《广东海洋大学学报》2008,28(4)

采用SSR分子标记分析了吉富品系罗非鱼的两个家系(GF1和GF2)以及奥利亚罗非鱼(Fo)和奥本尼罗罗非鱼(Fn)群体的遗传结构。结果显示,扩增后等位基因数为3～8个,随引物不同而异,14对引物共扩增60个等位基因,扩增片断大小在102～267 bp之间。微卫星分析表明,奥本尼罗罗非鱼(Fn)的平均观测杂合度(0.764 3)和平均期望杂合度(0.519 6)均最高,吉富尼罗罗非鱼(GF1)平均多态信息含量(0.419 5)最高;吉富尼罗罗非鱼(GF2)平均观测杂合度(0.614 2),奥利亚罗非鱼(Fo)的平均期望观测度(0.446 6)、平均多态信息含量(0.359 2)最低;因此,吉富鱼(GF1)的遗传多样性最高,奥利亚的遗传多样性最低。Hardy-Weinberg平衡遗传偏离指数(D)奥利亚(Fo)和尼罗(Fn)(0.463 4和0.478 9)明显高于吉富的两家系(0.234 1和0.250 0)。Fo与GF2间遗传距离(0.477 0)最大;而GF1和GF2间的遗传距离(0.302 7)最小,遗传相似系数(0.607 3)最大,可推断新一代吉富罗非鱼与本地选育群体有相对较远的亲缘关系,更具杂种优势。  相似文献   

野生二粒小麦 Triticum dicoccoides抗杀锈病基因 YrH52分子定位的初步研究(英文)     

PengJ.H.  FahimaT.  RoderM.S.  LiY.C.  DahanA.  GramaA.  NevoE. 《广东海洋大学学报》1999,(4)

主要对以色列野生二粒小麦赫尔蒙种群中分离获得的一个抗条锈病基因进行了分子定位研究 ,将源于赫尔蒙山具抗杀锈病的种系 T.dicoccides H52与普通的栽培种 Langdon进行杂交并创建了 F2 代遗传图。研究发现 H52种系抗条锈病的能力由一种显性基因控制 ,将其暂定名为 Yr H52。从 1 2 0个微卫星标记中 ,已经检测到来自亲本 91 %的多态性 ,而且从其中 56个微卫星分子标记中产生了 79个分离的位点 ,有 9个位点显示出了与 Yr H 52基因连锁 ,其重组率 0 .0 2～ 0 .3 5,遗传距离 2 .0 0～ 4 3 .3 7cm之间 ,L OD值 3 .56～ 54.2 2。由 1 0个微卫星位点和 Yr H52构建的染色体 1 B遗传图 ,其图距全长为 1 0 1 .5cm。Yr H52基因位于 Xgwm2 64 a和 Xgwm2 64 c之间 ,且与 Xgwm2 64 a、Xgwm1 8紧密连锁 ,两侧依次分别与 Xgwm1 3 1 a、Xgwm63 6b、Xgwm2 64 c、Xgwm4 0 3 a、Xgwm1 53、Xgwm550 a和 Xgwm1 2 4连锁。同时 ,Yr H52也与 REL P标记物 N or1紧密连锁 ,图距 1 .4 cm,L OD2 9.62。这显然与野生二粒小麦另一个抗条锈病基因 Yr1 5不同 ,研究证明 Yr1 5与 N or1图距是 1 1 .0 cm。  相似文献   

Identification and occurrence of novel C₃₆–C₅₄ 3,4-dialkylthiophenes with an unusual carbon skeleton in immature sediments     

M.E.L. Kohnen  T.M. Peakman  J.S.Sinninghe Damste  J.W. de Leeuw 《Organic Geochemistry》1990,16(4-6)

A series of novel long-chain 3,4-dialkylthiophenes (C₃₆–C₅₄) was identified in a number of sediments ranging from Pleistocene to Cretaceous. The identifications were based on mass spectral characterisation, desulphurisation and mass spectral data of synthesised model compounds. These organic sulphur compounds are probably formed by sulphur incorporation into mid-chain dimethylalkadienes with two methylenic double bonds. These putative precursor lipids are unprecedented and may be considered rather unusual. The distribution of 3,4-dialkylthiophenes in sediments varies considerably with the depositional palaeoenvironment, indicating that these compounds have a potential as molecular markers reflecting changes in palaeoenvironment.  相似文献