Molecular identification and culture trials of Eutreptiella gymnastica (Eutreptiales, Euglenophyceae)     

徐娜  逄少军  单体锋  刘峰  赵小波  高素芹 《中国海洋湖沼学报》2012,30(3):446-455

During a survey for marine microalgal resources, we isolated a rare marine euglenoid from the coastal waters of Qingdao, China in 2009, and established a pure culture. Electron microscopic and molecular phylogenetic (18S rDNA and 16S rDNA sequences) analyses revealed a close affinity with Eutreptiella gymnastica, a bloom-forming species. Different culture conditions were monitored to understand optimal E. gymnastica growth characteristics. The optimal growth conditions in a batch culture of this isolate were 20°C, 160 μmol photons/(m2×s) of white light, and a salinity of 10-31. Nutrient experiments demonstrated that growth increased dramatically with a phosphorus concentration greater than 72 μmol/L. Understanding the effect of culture conditions on E. gymnastica may help understanding the blooming mechanism of this alga in its natural environment.  相似文献   

Development and validation of a TaqMan^TM fluorescent quantitative real-time PCR assay for the rapid detection of Edwardsiella tarda     

XIE Guosi  HUANG Jie  ZHANG Qingli  HAN Nan  SHI Chengyin  WANG Xiuhua 《海洋学报(英文版)》2012,31(4):140-148

Edwardsiella tarda is one of the most important emerging pathogens in the global aquaculture industries. As such, an accurate diagnosis and quantitative analytical methods are urgently needed for this bacterium. In this study, primers and a TaqMan probe specific to the conservative sequences of the 16S rRNA gene of E. tarda were designed. The concentration of primers and TaqMan probe were optimized to 200 nmol/L and 120 nmol/L, respectively. The detection sensitivity of the FQ-PCR assay was determined to be as low as five copies of the target sequence per reaction using the pGEM-16S rDNA recombinant plasmid as a template, which was 100 times more sensitive than conventional PCR. A standard curve by plotting the threshold cycle values （y） against the common logarithmic copies （log₁0 n_c as x; n_c is copy number） of pGEM-16S rDNA was generated. The results of intra-and inter-assay variability tests demonstrate that the established FQ-PCR method was highly reproducible. The assay was specific for E. tarda as it showed that there was no cross-reactivity to eight additional bacterial pathogen strains in aquaculture. Thus, the FQ-PCR assay has the potential for diagnostic purposes and for other applications, especially for the rapid detection and quantification of low-grade E. tarda infections.  相似文献   

Community composition of bacterioplankton and cell transport in lakes in two different drainage areas     

Eva S. Lindström  Ann-Kristin Bergström 《Aquatic Sciences - Research Across Boundaries》2005,67(2):210-219

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舟山海域一株产碱性蛋白酶海洋放线菌的鉴定、选育及发酵条件的初步研究     

李鹏  苗增良  王健鑫 《海洋与湖沼》2014,45(5):1127-1136

从舟山海域潮间带海泥筛选到产碱性蛋白酶的海洋放线菌,利用Folin-酚法进行酶活测定,选取酶活最高的菌株进行鉴定,绘制系统进化树。再通过紫外线和DES诱变从而得到高产碱性蛋白酶的海洋放线菌菌株,并进行初步的发酵条件研究。结果表明:分离筛选得到2株菌株,在脱脂奶筛选平板上能产生较大的水解透明圈,通过Folin-酚法进行酶活测定,挑选出酶活较高的菌株A20(初始酶活为104.7U/mL),生理生化试验和16S rDNA试验结果显示该菌株为Streptomyces roseus。对菌株A20进行紫外线和硫酸二乙酯(DES)诱变,最终得到高产碱性蛋白酶的菌株,酶活为227.5U/mL,酶活提高117.3%,传代试验显示该菌株具有较好的遗传稳定性。单因素试验显示最适发酵温度为50°C、pH值为9.0、培养时间为72h。  相似文献   

南太平洋环流区底层水可培养细菌多样性研究     

李昭  乔延路  范晓阳  史晓翀  张晓华 《中国海洋大学学报(自然科学版)》2014,44(6):52-59

为研究南太平洋环流区底层海水可培养细菌的多样性,通过IODP 329航次获得了该区域7个站点的底层海水样品,利用传统的分离培养法获得菌株后,进行16SrDNA测序及系统发生分析。结果表明,从南太平洋环流区7个站点的底层水中分离出174株深海细菌,这些菌株属于4个门,30个属,78个种。其中γ-变形菌纲(γ-Proteobacteria)有143株,在数量和种类方面均占主导地位;α-变形菌纲(α-Proteobacteria)7株,β-变形菌纲(β-Proteobacteria)2株,厚壁菌门(Firmicutes)11株,放线菌门(Actinobacteria)6株,拟杆菌门(Bacteroidetes)5株。优势属有假交替单胞菌属(Pseudoalteromonas)、交替单胞菌属(Alteromonas)、弧菌属(Vibrio)、盐单胞菌属(Halomonas)等10个属;优势种有居珊瑚假交替单胞杆菌(Pseudoalteromonas paragorgicola)、子午盐单胞菌(Halomonas meridiana)、坎氏弧菌(Vibrio campbellii)、西班牙交替单胞菌(Alteromonas hispanica)、河豚毒素假交替单胞菌(Pseudoalteromonas tetraodonis)、琼氏不动杆菌(Acinetobacter junii)等12个。在7个站点中,位于环流边缘的U1371站点分离出的菌株数量明显多于其他站点,且是7个站点中唯一1个包含了分离出的所有6个门类的站点,多样性最高;而U1369和U1370站点都只分离出γ-变形菌纲1个门类。此外,9株细菌可能为海洋细菌新属或新种。  相似文献   

Isolation and characterization of a fucoidan-degrading bacterium from Laminaria japonica     

WANG Ying  LI Bafang  ZHAO Xue  and PIAO Meizi 《中国海洋大学学报(英文版)》2014,13(1):153-156

Fucoidan, a polysaccharide containing abundant fucose and sulfate ester group, was prepared from Laminaria japonica. In order to obtain fucoidan-degrading enzyme, bacteria capable of degrading fucoidan were screened from kelp. A bacterial strain named RC2-3 was obtained, which degraded fucoidan by the maximum extent of 54% ± 1.3%, the highest among all bacterial isolates. High-performance size exclusion chromatography(HPSEC) showed that the molecular weight of fucoidan was gradually reduced by RC2-3 with culturing time, suggesting the production of fucoidan-degrading enzyme by RC2-3. Phylogenetic analysis of partial 16S ribosomal RNA gene(16S rDNA) sequence showed that RC2-3 belonged to the family Flavobacteriaceae. However, it showed different physiological and biochemical characteristics from the known Flavobacteriaceae members producing fucoidan-degrading enzyme, thus RC2-3 was proposed to be a new member of this family.  相似文献   

椒江口沉积物中细菌多样性初步研究   总被引：2，自引：1，他引：1  

蒋然  王健鑫  黄备  张潘  郑俊威  俞凯成  刘明华 《海洋与湖沼》2015,46(4):887-900

通过常规分离纯化、鉴定和构建细菌克隆文库的方法,研究椒江口三个站点沉积物中细菌的多样性,并对其进行系统发育分析。可培养细菌的形态学及API鉴定结果显示杀鲑气单胞菌是优势种,典型细菌16S r DNA分子鉴定结果表明γ-变形菌纲和厚壁菌门为主要类群。未培养细菌克隆文库的序列分析结果表明:细菌主要包括变形菌门、酸杆菌门、绿弯菌门、芽单胞菌门、硝化螺旋菌门、CFB群、放线菌门、厚壁菌门等8个类群;其中C0站点克隆子主要属于γ-变形菌纲及绿弯菌门;C1站点克隆子以α-变形菌纲及γ-变形菌纲为主;C2站点克隆子主要属于放线菌门及α-变形菌纲。综合可培养及未培养结果,可发现椒江口沉积物中γ-变形菌纲为典型优势类群,且相当数量的克隆子其且相当数量克隆子的相似序列来自重金属或石油烃污染的沉积环境。  相似文献   

Phylogenetic analysis and biological characteristic tests of marine bacteria isolated from Southern Ocean (Indian sector) water     

GUPTA Pratibh  BALAJI Raju  PARANI M  CHANDRA T S  SHUKLA P  KUMAR Anil  BANDOPADHYAY Rajib 《海洋学报(英文版)》2015,34(8):73-82

Fifty-seven bacteria were isolated from Southern Ocean(Indian sector) water samples which were collected from different latitude and longitude of the ocean. All the isolates were able to grow at 4°C, 20°C, 37°C and tolerable Na Cl concentration up to 13.5%(w/v). 29 out of 57 isolates were identified using 16 S rDNA amplification and the sequences were submitted to National Center for Biotechnology Information(NCBI). All the isolates were classified by using Ribosomal Database Project(RDP) and found that isolates belongs to Proteobacteria and Bacteriodes. The average G+C content was 56.4%. The isolates were screened for the presence of extracellular enzymes, viz. amylase, catalase, urease, esterase, lipase and protease. The disc diffusion method is used to screen antibiotic production by the isolates against four pathogenic bacteria, viz. Salmonella typhimurium(NCIM 2501),Staphylococcus aureus(NCIM 2122), Bacillus subtilis(NCIM 2193), and Pseudomonas aeruginosa(NCIM 2036).Nine out of 29 were found to be antibiotic producer.  相似文献   

Lytic Characteristics and Identification of Two Alga-lysing Bacterial Strains     

PEI Haiyan )  and HU Wenrong )  )  * ) College of Environmental Science  Engineering  Ocean University of China  Qingdao  P.R.China ) Shandong Provincial Engineering Centre on Environmental Science  Technology  Jinan  P.R.China ) School of Environmental Science  Engineering  Shandong University  Jinan  P.R.China 《中国海洋大学学报(英文版)》2006,5(4):368-374

Lytic Characteristics and Identification of Two Alga-lysing Bacterial StrainsBeaulieu, S. E., M. R. Sengco, and D. M. Anderson, 2005. Using clay to control harmful algal blooms: deposition and resuspension of clay/algal flocs. Harmful Algae . (4): 123-138…  相似文献   

南海细菌胞外多聚物的神经保护活性筛选          下载免费PDF全文

卫茂生  王清池  耿丽华  岳洋  孙超岷  张全斌 《海洋科学》2023,47(3):79-88

本文采取传统的醇沉水溶的工艺提取了深海细菌的胞外聚合物(extracellularpolymericsubstance,EPS),使用过氧化氢作为损伤剂建立SH-SY5Y人神经母细胞瘤体外氧化损伤模型。在安全剂量下评价EPS的体外神经保护活性,确定16种活性良好(细胞活力>90%)的EPS。16种EPS的成分分析结果如下:1)16种EPS的分子量分布呈三段式,分别为>200 kDa, 10～200 kDa和<10 kDa; 2)16种EPS单糖组成中除甘露糖、葡萄糖外,还有稀有单糖氨基葡萄糖、鼠李糖、葡萄糖醛酸、氨基半乳糖、半乳糖、岩藻糖; 3)EPS的总糖含量为14.06%～21.40%,蛋白含量为10.66%～31.05%,硫酸基含量为2.91%～26.53%。通过对相应菌株进行16SrDNA全序列分析并与GenBank比对,完成了活性菌株的鉴定,通过MEGA7.0和Figtree构建系统进化树。鉴定结果表明,16株深海细菌归属于3门8科9属16种,分布在三个门类:厚壁菌门(Firmicutes, 9/16),变形菌门(Proteobacteria, 6/16)和...  相似文献