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The study investigated the global and regional phylogeography of the yellowtail kingfish Seriola lalandi by examining genetic diversity and population genetic structure of this species at inter-and intra-ocean level and on a regional scale. DNA fragments of two mitochondrial genes, cytochrome b (Cytb) and cytochrome c oxidase subunit I (COI) and one nuclear gene, recombination activating gene 1 (RAG1), were sequenced to investigate the global-scale phylogeography of this species. The population genetic structure within the South Pacific, as well as along the South African coastline, was examined further using six microsatellite markers. Three distinct clades were identified for S. lalandi, which correspond with previously described subspecies of the North-East Pacific, North-West Pacific and the Southern Hemisphere. Within the latter, additional divergence was observed between the South Pacific and the South-East Atlantic regions. Divergence estimates were indicative of a Pacific origin for S. lalandi populations, because of Pleistocene vicariant events. Microsatellite analyses revealed overall significant genetic differentiation between South African and South Pacific samples. This corroborates recent findings on the global phylogeography of the species. No population differentiation was observed within South Africa, indicating high levels of gene flow. 相似文献
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JD Klein AE Bester-van der Merwe ML Dicken A Emami-Khoyi KL Mmonwa 《African Journal of Marine Science》2019,41(1):115-118
Genomic data can be a useful tool in the management and conservation of biodiversity. Here, we report the development of genomic resources for the spotted ragged-tooth shark Carcharias taurus using genome-wide DNA data from Illumina next-generation sequencing. We explored two commonly used genetic marker types: microsatellites and mitochondrial DNA. A total of 4 394 putative microsatellites were identified, of which 10 were tested on 24 individuals and found to have ideal properties for population genetic analyses. Additionally, we reconstructed the first complete mitochondrial genome of a South African spotted ragged-tooth shark, and highlight the most informative gene regions to facilitate future primer design. The data reported here may serve as a resource for future studies and can ultimately be applied in the sustainable conservation and fisheries management of this apex predator. 相似文献
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KML在OneGeology和Google Earth之间的桥接作用浅析 总被引：1，自引：0，他引：1
为了促进全球范围内的地质图数据网络共享，国际地球科学联合会发起了OneGeology项目。目前该项目已经得到超过100个国家和地区和大量国际组织的参与，且已有40多个国家和地区在OneGeology项目的网站上登记了共享的地质图数据。由于这些数据源的服务器由各参与国的地质调查机构自己负责，OneGeology网站本身只通过一个数据接口OneGeology Portal提供对这些分布式数据源的浏览窗1：2。同时，另外一个重要的功能就是通过OneGeology Portal把选择的数据导出为KML文件，通过在Google Earth中打开该KML文件，可以把对应的数字地质图和和其他数据叠加浏览和分析，这也扩大了地质图数据的使用方式和服务目的。本文对KML文件在OneGeology和Google Earth之间的这种桥接作用做了分析并介绍了具体的操作过程。 相似文献
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The species-rich genus Mustelus (smoothhounds) of the shark family Triakidae is one of the most bio-economically important groups of elasmobranchs in the world’s oceans. Despite the commercial value of Mustelus, the systematics of the group remains largely unresolved and there is no global review or synthesis of knowledge about the conservation status and conservation genetics of smoothhounds across all oceanic regions. Here, we analysed published studies as well as grey literature to gain insight into the biogeographic, ecological and behavioural factors that shape genetic diversity in smoothhounds, and we identify critical knowledge gaps. From a series of molecular phylogenetic studies it can be inferred that the genus Mustelus is paraphyletic and that the aplacental species evolved secondarily from the placental species of the genus. The increasing availability of genetic data aids in disentangling systematic issues, such that more meaningful morphological characters can be chosen for use in practical field-identification keys for co-occurring smoothhounds. An integrative taxonomic approach to the genus Mustelus may offer the best chance of recording and protecting the biodiversity of these sharks. Furthermore, it is evident that different smoothhound species exhibit unique gene-flow patterns, suggesting varying rates within species and hence that species-level conservation approaches would be most appropriate. Molecular studies have advanced our understanding of smoothhound biology (including reproductive traits), ecology and evolution. While many knowledge gaps remain, a crucial lesson from this review is that, when doing assessments on a molecular level, it is important to place genetic results in a broader context, by assimilating biological and ecological data, if definitive conclusions are to be drawn. 相似文献
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The theory of experimental error in analysis of mixture experiments by abstract factor analysis or targettransformation factor analysis is considered. The theoretical implications of using signal-to-noise ratios(as weights) or canonical variates analysis to reduce the level of imbedded error in the factor model areexamined. The approach is illustrated by application to ~(13)C NMR spectra of lubricant basestockmixtures. 相似文献
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