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A numerical ecosystem model expressing both phosphorus and nitrogen cyclings in the pelagic system of Hiroshima Bay, Japan, was developed in order to investigate the seasonal variations of these elements and their annual budgets. Based on the geophysical and chemical structures of the bay, Hiroshima Bay was divided into northern and southern boxes, themselves divided into two layers of an upper 5 m and a lower layer according to the stratification of the water column. The model consists of equations representing all relevant physical and biological processes. The results revealed that the internal regeneration of materials was an important source of bioavailable nutrients for phytoplankton growth in the water column. The incorporation of phytoplankton aggregation improved the accuracy of the outputs in comparison to the observed data, especially during the stratified summer season. The results also indicated that phosphorus limitation of phytoplankton growth occurs in the upper layer during summer while light limitation occurs in the lower layer. In addition, physical processes such as diffusion and advection were also important as they ensured that most of regenerated nutrients in the lower layer were transported to the upper layer. Thus, these processes might support the high primary production and the production of oysters that are extensively cultured in this bay. Considering the informative results obtained, the model used in this study provides a sound basis and tool to describe the dynamics of phosphorus and nitrogen cyclings in Hiroshima Bay.  相似文献   
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