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陈璐  姜国良  刘云  仇磊  项鹏 《海洋科学》2009,33(12):1-3
用RNA提取试剂--TRIZOL Reagent提取刺参(Apostichopus japonicus)肌肉组织总RNA,用SMART cDNA Library Construction Kit构建cDNA文库.经测定原始文库滴度达到 3.2×10~6,扩增后文库滴度达到 5.1×10~9,重组率达到96.7%,从扩增文库随机挑取12 个克隆进行PCR 扩增鉴定,结果显示,插入片段大小为0.5~2.5 kb.通过各项指标验证成功构建了刺参肌肉组织cDNA 文库.  相似文献   

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以3种不同盐度处理的大叶藻为材料,采用RNA转录本5’末端转换机制(SMART)构建了大叶藻叶片全长cDNA文库,原始文库滴度为8.675×106pfu/mL,重组率为97.19%,插入片段平均长度大于800bp,扩增后的文库滴度达到1.03×109pfu/mL。将部分原始λ噬菌体cDNA文库转化成质粒cDNA文库,PCR检测结果显示文库插入片段集中在750~2000bp之间。随机选取20个单克隆进行测序,其中13条序列包含完整的开放阅读框。结果表明所构建文库容量大,全长比例高,为深入开展大叶藻功能基因研究奠定了基础。  相似文献   

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采用Trizol试剂提取副溶血弧菌感染的九孔鲍血细胞的总RNA,经Oligotex纯化得到mRNA.根据SMART技术原理合成双链cDNA.双链cDNA采用双链特异核酸酶进行cDNA的均一化,构建成九孔鲍血细胞的均一化全长cDNA文库.原始文库的库容为3.4×106 cfu/cm3,重组率为92.3%,扩增后文库的滴度为2.6×1011 cfu/cm3以上.从文库中随机挑取897个克隆,测序获得高质量ESTs814条,其中有23条Contigs; 762条Singlets,Unigenes共785条,冗余率只有3.56%.以上结果说明所构建的文库质量好,完全可以满足后续基因克隆和表达序列标签测序工作的需要.  相似文献   

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谷胱甘肽系统在清除活性氧和生物保护中发挥重要作用,探讨了南极冰藻胞内谷胱甘肽含量及谷胱甘肽相关酶的活力.采用分光光度法,对24种南极冰藻胞内谷胱甘肽含量、谷胱甘肽合成能力(GPA)、谷胱甘肽还原酶活力等进行测定.测定结果表明,南极蓝藻B-1中谷胱甘肽含量最高;南极衣藻ICE-L和南极硅藻GJ01的谷胱甘肽总产量居前2位;南极冰藻GPA普遍高于常温藻的.南极硅藻GJ01和南极衣藻ICE-L GR活力高于对照组的.培养基的选择表明,f/2培养基适合南极硅藻GJ01的生长,而Provasoli培养基适合南极衣藻ICE-L的生长.可见,南极冰藻成为谷胱甘肽的新来源是有可能的,尤其是南极硅藻GJ01和南极衣藻ICE-L.  相似文献   

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文昌鱼头部cDNA文库的构建   总被引:2,自引:0,他引:2  
采用cDNA合成技术制备文昌鱼头部cDNA基因文库.以mRNA为模板,用NotI primer-Adaptor为引物,在反转录酶的作用下,合成第一链cDNA,进而合成第二链cDNA.含有EcoRI和NotI粘性末端的双链cDNA在T4DNA连接酶作用下与λgt11 EcoRI/NotI臂相连,包装蛋白包装,得到噬菌体颗粒,即原始的文昌鱼头部cDNA文库.经X-Gal/IPTG板测定, 该文库滴度为7.8×105 pfu/cm3,重组率为70%.cDNA文库可直接应用于目的基因筛选.  相似文献   

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雨生红球藻cDNA表达文库的构建与初步分析   总被引:1,自引:0,他引:1  
为了筛选雨生红球藻虾青素合成过程中的关键酶基因的反式调节因子基因,以雨生红球藻的绿细胞为材料,提取了高质量的总RNA,并分离纯化了mRNA,经过反转录后的得到cDNA,构建了以λ-ZAPExpress为载体的表达型cDNA文库。经检测,所构建的文库的滴度为5.1×105,重组率为100%。用PCR方法对文库的质量进行了鉴定,文库的平均插入片断的大小为1.7kb。雨生红球藻cDNA表达文库的构建为研究虾青素的代谢工程奠定了基础。  相似文献   

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皱纹盘鲍(Haliotis discushannai Ino)胚胎RNA分离和cDNA文库构建   总被引:2,自引:0,他引:2  
从皱纹盘鲍胚胎样本中分离RNA并构建了cDNA文库。分别收集孵化8、10和12h的皱纹盘鲍胚胎,用抽滤除菌的海水反复悬浮胚胎,将这3个发育阶段的胚胎样本等量混合后用TRIZOL试剂提取总RNA,将提取物用酚氯仿异戊醇再抽提2次,分离获得高质量的总RNA。从总RNA中分离mRNA,构建了皱纹盘鲍混合胚胎的cDNA文库,未扩增胚胎文库的滴度为5.0×106pfu/ml,重组率为94.12%,插入片段均大于400bp,70.6%克隆的插入片段分布在1000—1500bp之间,扩增后的文库滴度为3.06×109pfu/ml。  相似文献   

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海上大直径钢管桩打桩过程中,桩周土体受到强烈扰动而发生强度弱化,掌握桩周土体强度弱化规律对于准确预测打桩过程、保证工程安全具有重要意义。为研究土体强度弱化规律,开展了环剪试验模拟打桩对桩周土体的扰动,测试土体强度随剪切速率的变化规律,建立了描述土体强度弱化规律的拟合公式,引入到打桩分析软件中。研究结果表明:土体的强度折减程度不仅与土体本身的性质有关还受到土体的埋深和剪切速率的影响,埋深越深土体强度折减程度越低,剪切速率越高土体强度折减越高,在打桩分析中可采用这里推荐的线性折减方法来模拟不同深度处土体强度的折减规律。  相似文献   

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A set of 27 marine planktonic bacteria isolated from the polar regions was characterized by 16S rDNA sequencing and physiological and biochemical testing. More than half of these bacteria were positive for caseinase, gelatinase and 13-glucosidase, and could utilize glucose, maltose or malic acid as carbon source for cell growth. Twelve isolates expressed nitrate reduction activities. Except for one antarctic isolate BSwlO175 belonging to Actinobacteria phylum, these isolates were classified as γ-Proteobacteria, suggesting that γ-Proteobacteria dominated in cultivable marine bacterioplankton at both poles. Genus Pseudoalteromonas was the predominant group in the Chukchi Sea and the Bering Sea, and genus ShewaneUa dominated in cultivable bacterioplankton in the Prydz Bay. With sequence similarities above 97%, genus Psychrobacter was found at both poles. These 27 isolates were psychrotolerant, and significant 16S rDNA sequence similarities were found not only between arctic and antarctic marine bacteria ( 〉 99% ), but also between polar marine bacteria and bacteria from other aquatic environments ( ≥ 98.8% ), including temperate ocean, deep sea, pond and lake, suggesting that in the polar oceans less temperature-sensitive bacteria may be cosmopolitan and have a bipolar, even global, distribution at the species level.  相似文献   

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Sediment properties, such as water content and density, have been used to estimate the dry and wet weights, as well as the volume of sediment recovered and discharged, during benthic impact experiments conducted in the Pacific and Indian Oceans. The estimates show that the weights of dry (355-1332 t) and wet sediment (1651-4888 t) recovered during the experiments, are not only a function of the total duration and distance covered during the experiment, but also depend on water content and density of the sediment. Estimation of dry sediment and its volumetric ratio in the discharge, are key parameters for calculating the discharged volume. The estimated volume of wet sediment recovered (1427-4049 m 3 ) as well as discharged (2693-6951 m 3 ) during the experiments, provide important inputs to evaluate the sediment resettlement and migration. Using these estimates, the average depth of excavation on the seafloor, can also been calculated. However, the stages of sediment recovery and discharge are expressed differently in some of the experiments. In order to standardize these, different stages have been identified, and definitions of certain terms have been suggested, for use in the future. The methods of calculating different properties, as well as weight and volume of discharged sediment are described in the paper for use in other applications concerning deep-sea discharges.  相似文献   

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A vertically integrated model has been used to study the tidal circulation and currents in the Gulf of Kachchh along the west coast of India. The model is fully nonlinear and uses a semiexplicit finite difference scheme to solve the basic hydrodynamic equations on a staggered grid. The model is forced by prescribing the tides along the open boundary of the model domain. The flow is simulated both with and without the presence of the proposed tidal barrage across the Hansthal Creek in the Gulf of Kachchh. The results show a considerable change in the behavior of the tidal flow in the presence of the barrage.  相似文献   

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<正>The typhoon,as a mature tropical cyclone that develops in the western part of the North Pacific Ocean with high wind speed and heavy rainfall,is one of the most lethal and costly of natural disasters for the densely populated countries of East Asia.It can be easily detected by space-borne sensors operated at microwave,visible or infrared bands(Liu et al.,2014).Synthetic Aperture Radar(SAR)is  相似文献   

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本文介绍了用国产D401型螯合树脂分离富集海水中铜、铅、锌、镉、铁、锰等痕量元素,并用原子吸收光谱仪测定其含量的方法。讨论了各元素的分离条件选择及干扰元素的影响,并与溶剂萃取法的结果作了比较。各元素检测的定量下限为:铜0.5μg/L、铅0.1μg/L、锌1.0μg/L、镉0.01μg/L、铁2.0μg/L、锰2.0μg/L。方法精密度在4—8%之间,回收率为90—102%。  相似文献   

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Soil core samples fromRhizophora mangleL. andAvicennia schauerianaStapf & Leech forests from south-eastern Brazil were analysed for their total organic matter content and their sugars, amino acid and amino sugars composition. Organic carbon and nitrogen contents were higher inAvicenniathan inRhizophorasoils. The contribution of sugars and amino acids to the total organic carbon pool was constant with depth inRhizophorasoils whereas inAvicenniasoils it increased. Spectral distribution of sugars and amino acids showed a dominance of Ca-affine monomers, particularly acidic amino acids, and the sugar arabinose. Biogeochemical indicators derived from ratios of individual sugar and amino acid monomers confirm previous studies which showed that organic matter in both soils is mainly of mangrove origin. The results further suggest accumulation of organic matter inRhizophorasoils and a continuing degradation of organic matter inAvicenniasoils. The latter may thus release more nutrients to adjacent ecosystems thanRhizophorasoils.  相似文献   

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Orange roughy Hoplostethus atlanticus are unusual fish. They form dense aggregations that have fuelled lucrative fisheries at great depths (600–1 400 m), especially off Namibia, New Zealand and Australia. They are thought to be very long-lived (>100 years, maturity at 22 – 40 years), and to have exceptionally low natural mortality (M = 0.045–0.064 year?1) and slow growth rates (K = 0.055–0.070 year?1). In addition, they spawn large eggs and have low fecundity. These factors combine to make orange roughy highly susceptible to overfishing; most stocks are below 30% of pristine levels. Assessments are obtained from indices of catch rate and trawl, acoustic and egg surveys. Acoustic estimates are the most direct, but are confounded by the species' low target strength (?50 to ?53 dB)–attributable to the wax-filled swim bladder. Extracellular wax esters are stored in abundance and comprise mostly mono-unsaturated fatty acids, with low concentrations of the ω-3 fatty acid family. This unusual composition (resultant from the species' diet) ensures neutral buoyancy. Stock separation has been inferred mainly from biological studies, but genetic studies have also found differences among stocks within New Zealand and Australia. Deep-water habitat may be damaged by trawling operations and may take many years to recover, so in some quarters there is a call for a portion of suitable habitat to be set aside for preservation. Although Namibian orange roughy are shallower, smaller and younger than those in other stocks, the Namibian fishery sustained high catches for only a few years before quotas were reduced, from 12 000 to 1 875 tons. Three management lessons are suggested for developing orange roughy fisheries based on the Namibian experience: (1) imposition of catch limits during exploratory fishing; (2) starting the acoustic surveys earlier in the fishery, if possible; (3) greater reliance on trends in catch rate until a survey series has been established.  相似文献   

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