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1.
IFN-γ是哺乳动物的一个关键免疫调节因子,通过特异性地结合IFN-γ受体1(IFNGR1)和IFN-γ受体2(IFNGR2)组成的异源四聚受体复合物,来发挥其生物学功能.目前,在鱼类中已经克隆出IFNGR1基因的2个亚型:细胞因子受体家族B 13(CRFB13)和细胞因子受体家族B17(CRFB17).本研究从大黄鱼(Larimichthys crocea)中克隆得到了一个CRFB13基因(Lyc CRFB13),其开放阅读框全长1 158个核苷酸,编码由385个氨基酸组成的1个蛋白.Lyc CRFB13蛋白具有典型的II型细胞因子受体特征,包括1个信号肽、1个胞外的FN III-like结构域,1个单次跨膜结构域,以及胞内的JAK1和STAT1结合位点.氨基酸序列分析表明鱼类的CRFB13都具有JAK1和STAT1结合位点.系统进化分析表明鱼类的2种IFNGR1,CRFB13和CRFB17形成2个独立的分支,Lyc CRFB13和鱼类的CRFB13聚在一起,与雀鲷(Stegastes partitus)CRFB13的亲缘关系最近.组织分布显示Lyc CRFB13为组成型表达,在大黄鱼鳃中的表达量最高,而在小肠中的表达量最低.Poly(I:C)刺激后,大黄鱼鳃和头肾中CRFB13的mRNA转录水平都显著升高.此外,poly(I:C)和LPS还能够诱导大黄鱼头肾白细胞中Lyc CRFB13的表达,这些结果表明Lyc CRFB13可能在大黄鱼抗病毒、抗细菌免疫反应中发挥重要作用. 相似文献
2.
白细胞介素7受体α链(IL-7Rα,CD127)是一个重要的多效性细胞因子受体.本研究克隆得到大黄鱼(Larimichthys crocea)的IL-7Rα(LycIL-7Rα),其开放阅读框全长1 242 bp,编码413个氨基酸.通过氨基酸序列分析和多序列比对发现,LycIL-7Rα多肽具有I型细胞因子受体的典型特征,包括4个保守的半胱氨酸、1个信号肽、1个单次跨膜结构域、1个胞外的fibronectin type III(FN IIIlike)结构域、1个Trp-Ser-X-Trp-Ser(WSXWS)基序以及胞内Box1结构域.系统进化分析表明,LycIL-7Rα与其他鱼类的IL-7Rα聚在一起,与鲈鱼(Lates calcarifer)IL-7Rα的亲缘关系最近.Realtime PCR结果表明,LycIL-7Rα在健康大黄鱼中为组成型表达,在脾脏中的表达量最高,在心脏中的表达量最低.大黄鱼经聚肌苷酸胞苷酸[Poly(I:C)]或溶藻弧菌(Vibrio alginolyticus)刺激后,其脾脏中LycIL-7Rα的mRNA转录水平均显著上调.这些结果表明LycIL-7Rα可能在大黄鱼免疫反应中发挥重要作用. 相似文献
3.
通过克隆大黄鱼(Larimichthys crocea)的EBI3(Epstein-Barr virus-induced gene 3)基因并对其进行了序列分析.大黄鱼EBI3(Lyc EBI3)基因开放阅读框长747bp,编码248个氨基酸,存在1个信号肽序列和2个FN3结构域(37~130,145~230).多序列比对发现Lyc EBI3分子与其他已知EBI3氨基酸水平一致性为27.68%~57.53%.Real-time PCR结果表明,Lyc EBI3基因在脾脏和血液中表达量最高,且溶藻弧菌(Vibrio alginolyticus)刺激后,大黄鱼头肾和脾脏中Lyc EBI3基因的转录水平会显著升高,说明Lyc EBI3基因可能参与了抑制由细菌引起的炎症反应. 相似文献
4.
白细胞介素10(Interleukin 10,IL-10)是一种抗炎细胞因子,可以抑制机体免疫反应。本研究经过分析大黄鱼基因组数据库发现了IL-10同源基因,并对其cDNA编码区序列和基因组DNA序列进行了克隆分析。大黄鱼IL-10(LycIL-10)基因由5个外显子和4个内含子构成,其序列全长1 869bp,其开放阅读框(ORF)长555bp,编码184个氨基酸,其N端的22个氨基酸残基为预测的信号肽,成熟肽由162个氨基酸残基组成,包含了脊椎动物IL-10标志性保守序列。LycIL-10的氨基酸序列同其他已知物种的IL-10氨基酸序列的一致性为26.49%~77.01%。Real-time PCR分析发现LycIL-10在检测的组织中为组成型表达,在脾脏和肌肉中转录水平相对较高。三联灭活细菌疫苗和聚肌苷酸胞苷酸(poly(I∶C))刺激后,大黄鱼头肾和脾脏中LycIL-10mRNA的转录水平会显著升高,表明LycIL-10可能参与抑制大黄鱼由细菌和病毒引起的炎症反应。 相似文献
5.
瘤背石磺表皮生长因子基因的克隆、结构及进化分析 总被引：2，自引：0，他引：2
首次在瘤背石磺(Onchidium struma)中克隆得到一种新的表皮生长因子(EGF)的cDNA序列全长。EGF基因cDNA的全长为1158bp,命名为Os-egf1,其中开放阅读框长度为846 bp,编码一条包含281个氨基酸残基的多肽链。根据氨基酸序列比对和结构域分析结果发现其含有2个保守的EGF结构域和1个EGF-like结构域,每个结构域中均包含至少6个半胱氨酸残基,且形成CX7 CX4-5 CX10-13CXCX8 C结构,其结构域由C1~C3、C2~C4和C5~C6之间形成的3个二硫键维持,符合表皮生长因子家族及其相关蛋白的特征结构域,但其余氨基酸序列与现有相关基因差异较大,推测可能是一种新的EGF-like基因。利用MEGA6.0软件构建Os-egf1与EGF家族相关蛋白的系统进化树,表明EGF家族蛋白具有一定的物种特异性。 相似文献
6.
Tristetraprolin (TTP)是广泛存在于真核生物的RNA结合蛋白。TTP通过促进mRNA降解或抑制翻译在转录后水平抑制炎症因子表达,是炎症性疾病的潜在治疗靶点。采用RACE技术获取了大黄鱼(Larimichthys crocea) TTP (命名为LcTTP) cDNA的全长序列。LcTTP全长cDNA 1 508 bp,包括77 bp的5′-非编码区(5’-UTR)、183 bp的3’-UTR和1 248 bp的开放阅读框(ORF),编码418个氨基酸残基。推导的LcTTP理论分子量44 897.78 Da,预测等电点pI 8.37;哺乳动物TTP的重要功能结构域:N-端核输出序列(NES)、中央串联锌指结构域(TZF)、C-端NOT1-结合结构域(NOT1-BD)也在LcTTP中保守存在;系统发育分析显示LcTTP和其他脊椎动物TTP聚为一支,并与哺乳动物ZFP36家族其他成员ZFP36L1、ZFP36L2和ZFP36L3的进化支分离。组织表达特异性分析显示检测的9个组织均表达LcTTP mRNA,但不同组织间表达水平差异大,其中肌肉组织表达水平最高。大黄鱼头肾细胞系... 相似文献
7.
白细胞介素10(interleukin10,IL-10)是鱼类先天性免疫因子之一,在炎症反应和免疫调节中有着重要作用。本研究获得大黄鱼(Larimichthys crocea)IL-10基因cDNA序列,由899个核苷酸组成,含1个555bp的开放阅读框、编码184个氨基酸,预测编码蛋白分子量为21.24kDa、N端有22个氨基酸组成的信号肽序列。氨基酸序列多重比对表明大黄鱼IL-10具有IL-10家族特征性序列和构成2对二硫键的4个保守性半胱氨酸,与欧洲鲈(Dicentrarchuslabrax)IL-10序列相似性最高(78.5%);系统进化树分析显示大黄鱼IL-10和其他鱼类IL-10形成一个大簇,与欧洲鲈进化关系最近。荧光定量PCR(quantitative real-time PCR, qRT-PCR)检测结果显示健康大黄鱼IL-10基因在鳃和肠中高表达,肝和头肾中低表达;溶藻弧菌(Vibrio alginolyticus)侵染后大黄鱼肠、脑、脾、肝和头肾中IL-10基因表达量均显著上调(P0.05),其中头肾和肝中上调幅度最大(分别为菌侵染前的10.06倍和8.79倍)。综上,大黄鱼IL-10基因表达与病原菌感染密切相关,为深入研究大黄鱼IL-10的生物学功能及免疫机制提供了基础资料。 相似文献
8.
《中国海洋大学学报(自然科学版)》2017,(1)
利用cDNA末端快速扩增技术(Rapid amplification of cDNA ends,RACE)克隆鉴定出斜带石斑鱼(Epinephelus coioides)卷轴受体3(Frizzled 3,gFZD3)基因的cDNA序列全长,使用ClustalX(1.81)和MEGA4.0软件分别进行了序列同源比对和系统进化树分析;利用RT-PCR检测gFZD3在成鱼不同组织中的表达和gFZD3在胚胎发育及卵巢发育过程中的表达模式。研究显示:gFZD3cDNA序列全长为2 278bp,其中开放读码框为2 079bp,编码692个氨基酸;序列同源性分析表明,gFZD3的氨基酸序列具有FZD家族保守的功能结构域;脊椎动物的FZD3系统进化树分析显示,斜带石斑鱼与大黄鱼(Larimichthys crocea)的亲缘关系最近;在成鱼的组织分布中,只在脑区和性腺中检测到gFZD3表达信号,其中在卵巢中表达量最高;在胚胎发育过程中,在未受精卵和受精卵中gFZD3的表达量最高,随着胚胎的发育呈逐渐下降趋势;在卵巢发育过程中,gFZD3的表达在早期卵巢中相对较低,在随后的III和IV期卵巢中较高。研究结果表明,FZD3序列在脊椎动物中具有较高的保守性;斜带石斑鱼gFZD3的表达具有明显的组织特异性,并在胚胎和卵巢发育中,可能主要作用于胚胎发育的早期和卵巢发育的后期。本研究为进一步研究Wnt信号通路在斜带石斑鱼生殖调控中的作用提供了参考。 相似文献
9.
本文测定了大黄鱼C3(L.c-C3)和C4(L.c-C4)基因的c DNA全序列。结果表明,L.c-C3和L.cC4序列全长分别为4962bp和5088bp,分别编码1653和1695个氨基酸,N端信号肽序列分别为23和19个氨基酸。推导的氨基酸序列结构分析表明大黄鱼C3和C4与已报道的补体C3、C4同样都具有在功能上比较重要的残基以及保守的硫酯区。分子进化分析表明,L.c-C3和L.c-C4分别与鮸鱼C3、C4的氨基酸同源性最高。实时荧光定量PCR结果显示,L.c-C3和L.c-C4在健康大黄鱼的肝脏、脾脏、肠、鳃、心脏、脑、肌肉和胃这8种组织中都有表达,其中肝脏的表达量最高。在大黄鱼胚胎不同发育时期(从2细胞期到初生仔鱼)中,L.c-C3在各个阶段没有明显的变化,而L.c-C4的表达量有明显升高。溶藻弧菌(Vibrio alginolyticus)侵染的大黄鱼肝脏和脾脏中,L.c-C3和L.c-C4的m RNA表达量均明显上调。该结果表明,大黄鱼肝组织C3和C4基因表达变化与溶藻弧菌的侵染密切相关,揭示了C3和C4在大黄鱼抗细菌免疫反应中具有重要的作用。 相似文献
10.
cGAS(cyclic GMP-AMP synthase)基因是近几年来新发现的先天免疫中一个新型的信号分子。作者基于大黄鱼(Larimichthys crocea)基因组信息,用cDNA末端快速扩增(RACE)技术在鳃组织中克隆鉴定了cGAS基因cDNA全长序列:包含1个231 bp的5′端-非翻译区(5′-UTR)、207 bp的3′-UTR和1 488 bp的开放阅读框(ORF),命名为Lc-cGAS-like X1。该基因编码1个由495个氨基酸残基组成的多肽,预测的分子量(Mw)大小为56.57kDa,理论等电点(pI)为9.45;序列分析表明其预测的蛋白无信号肽,第115～431位氨基酸序列为Mab-21功能域,第470～492位氨基酸序列为跨膜结构域。基因组全长3 153 bp,包含8个外显子和7个内含子,所有内含子的剪切特点都符合GT-AG规则。同源比对结果显示:Lc-cGAS-likeX1与鱼类cGAS的相似性大于66%,与高等脊椎动物的相似性较低。系统进化分析表明Lc-cGAS-like X1与鱼类cGAS聚成一支。荧光定量PCR(qPCR)检测显示Lc-cGAS基因(X1/X2两种剪切体)在大黄鱼9种组织中均有表达,其中在鳃中的表达量最高;刺激隐核虫感染后,大黄鱼免疫器官头肾中Lc-cGASmRNA分别在刺激隐核虫幼虫感染阶段和滋养体脱落阶段出现了极显著上调(P0.01);解毒器官肝脏中分别在滋养体脱落阶段和细菌感染阶段出现极显著上调变化(P0.01)。本研究结果暗示大黄鱼cGAS基因参与了大黄鱼感染刺激隐核虫的免疫防御过程,为进一步了解鱼类cGAS基因的多样化功能提供参考。 相似文献
11.
Arne Schnack-Friedrichsen Angela M. Davis Jim D. Bennell Dei G. Huws 《Marine Georesources & Geotechnology》2001,19(4):221-243
The interdependence between the seismo-acoustic properties of a marine sediment and its geotechnical/physical parameters has been known for many years, and it has been postulated that this should allow the extraction of geotechnical information from seismic data. Though in the literature many correlations have been published for the surficial layer, there is a lack of information for greater sediment depths. In this article, a desktop study on a synthetic seafloor model illustrates how the application of published near-surface prediction equations to subsurface sediments (up to several tens of meters burial depth) can lead to spurious predictions. To test this further, acoustic and geotechnical properties were measured on a number of sediment core samples, some of which were subjected to loading in acoustically-equipped consolidation cells (oedometers) to simulate greater burial depth conditions. For low effective pressures (representing small burial depths extending to around 10 meters subsurface), the general applicability of established relationships was confirmed: the prediction of porosity, bulk density, and mean grain size from acoustic velocity and impedance appears generally possible for the investigated sedimentary environments. As effective pressure increases through, the observed relationships deviate more and more from the established ones for the near-surface area. For the samples tested in this study, in some instances increasing pressure even resulted in decreasing velocities. There are several possible explanations for this abnormal behavior, including the presence of gas, overconsolidation, or bimodal grain size distribution. The results indicate that an appropriate depth correction must be introduced into the published prediction equations in order to obtain reliable estimates of physical sediment properties for greater subsurface depths. 相似文献
12.
Shigehisa Nakamura 《Marine Geodesy》2000,23(1):55-61
Specific properties of the interannual sea level variations and annual tides in the Northwestern Pacific were studied. Several tide stations were monitored. The monthly mean sea level for the year of 1995 was analyzed at each tide station. A seismic event in 1995, some tectonic activity around the subject area, and the Kuroshio (the oceanic western boundary current) may possibly contaminate results which would have occurred from the astronomical annual tide alone. 相似文献
13.
The effect of different fixation and storage protocols on the flow cytometric (FCM) simultaneous analysis of bacterioplankton and phytoplankton in coastal seawater samples (Mediterranean coastal lagoons) was investigated. FCM measurements (cell number, fluorescence and scatter characteristics) were obtained through DAPI staining. Three fixatives [glutaraldehyde (GA), formaldehyde (FA) and paraformaldehyde (PFA)] and two storage (3 months duration) methods (5 °C and −196 °C) were tested. Two dominant populations were detected in studied samples: bacteria and eukaryotic picophytoplankton. Adding fixatives (2% final concentration) appears necessary to obtain FCM exhaustive counts of all the bacteria and phytoplanktonic cells. This was related to the permeation effect of fixatives which allowed a better DAPI staining of the cells. Maximum fluorescence, i.e. optimal staining of the cells was obtained with FA or PFA, and significant lower fluorescences with GA. Fixed samples stored at 5 °C induced rapid cell loss. Only storage in liquid nitrogen of samples fixed with FA or PFA, allows mid-term (≥4 months) preservation of bacteria or picophytoplankton cell numbers, and limited evolution of DAPI-induced fluorescence and scatter characteristics. 相似文献
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《海洋学报(英文版)》2014,(9):F0003-F0003
<正>Acta Oceanologica Sinica(AOS)is a comprehensive academic journal edited by the Editorial Committee of Acta Oceanologica Sinica and is designed to provide a forum for important research papers of the marine scientific community which reflect the information on a worldwide basis.The journal publishes scholarly papers on marine science and technology,including physics,chemistry,biology, 相似文献
16.
The relationship between the flux of exotic benthic foraminiferal tests (i.e. tests which are supplied from open-sea sources alone) in a tidal inlet and that of bulk sediment was analysed, which can be expressed as two first-order linear equations. According to this relationship, in order to determine net sediment transport directions in the entrance, the test concentration in surficial sediments of the tidal basin can be compared against a ‘ critical level ’. The critical level is determined for the conditions that no net transport of bulk sediment is present within the entrance. If the observed concentration (averaged over the tidal basin) is higher than the simulated critical level, then the net sediment transport is directed to landward. This method is applied to the analysis of net sand transport at Christchurch Harbour, a tidal inlet system located in southern England. In this investigation, concentrations of exotic foraminiferal tests in the surficial sediments of the tidal basin and ebb tidal delta area were obtained from the analysis of sea-bed sediment samples. A series of probable critical levels were calculated based upon the data sets with regard to: (1) sediment discharge from the rivers; (2) magnitude of sediment discharge within the entrance during the ebb; (3) the test concentration outside the harbour; (4) the thickness of the moving layer; and (5) two parameters associated with dispersive processes. The results show that the concentration in the tidal basin sediment is higher than a number of simulated critical concentrations for representative cases. Consequently, the high level of the concentration of exotic benthic foraminiferal tests within the harbour should be explained as a result of landward net transport of sands within the entrance. 相似文献
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Rahul Sharma 《Marine Georesources & Geotechnology》2000,18(3):237-250
Observations on seafloor features from subbottom profiling and seabed photography data show that the undisturbed and natural conditions before the benthic disturbance undergo a substantial change after operation of the disturber. The effects can be seen in the form of deep trenches and grooves, formed by the action of the sleds and the pumping of the sediment along its path, as well as sediment piles on either side of the track. Biological traces such as fecal coils, casts, tubes, burrows, and trails get obliterated in the areas of disturbance and resedimentation. The smooth, uniform nature of the seafloor observed in predisturbance phase shows microtopographic changes in and around the disturbed area as a result of sediment excavation and resettlement. Vertical mixing as well as lateral transport of sediment alter the geological, biological, physical, and chemical conditions on the seafloor, which need to be monitored over time to assess the process and the time taken for restoration of environmental conditions. 相似文献
19.
Vance P. Vicente 《Marine Ecology》1989,10(2):179-191
Abstract. Long-term changes in the distributional patterns of commercial sponges ( Spongia spp. and Hippospongia spp.) within the West Indian Region indicates that: 1) commercial sponges had a widespread distribution throughout the whole West Indian Region and were ubiquitous in very shallow water until about the first half of the present century; 2) they were fished commercially not only in the traditional northern Caribbean sites (Florida, Gulf of Mexico, Bahamas) but also in the Greater ( e. g. , Hispaniola, Jamaica) and Lesser Antilles; and 3) they became extinct throughout most of the Lesser Antilles ( e. g. , Puerto Rico, Vieques, St. Thomas) sometime during the first half of this century. Mortalities of spongiids within the Antilles were found to differ from other marine mortalities in that: 1) species disappeared from a large region; 2) species vanished from different habitats and depths; and 3) natural populations never recovered. Species richness patterns suggest that commercial sponge genera ( Spongia and Hippospongia ) evolved under slightly cooler elimatic conditions than those found at present, and that these extinctions occurred as a direct or indirect effect of positive thermal anomalies in sea surface and atmospheric temperatures between 1900–1950. The concept that species diversity is stable on a regional scale is questioned. 相似文献
20.
The behaviour of an axially pre-loaded cylindrical member of an offshore structure, hit by a supply ship, has been investigated. The effects of axial pre-loading on the dynamic properties of members, the extent of damage and propagation of dynamic instability in the tubular members have also been investigated. Numerical models have been validated using available experimental data from the literature although these are mostly static with no pre-loading. Axial pre-loading was found to change the dynamic characteristics of some cylindrical members quite dramatically while it had no significant effect on others. The study examined whether there was any change in the behaviour between local and global modes when the loading was dynamic rather than static. The effect of damping on the dynamic instability of axially pre-loaded tubes under lateral dynamic loads was also studied. It was observed that for some geometries the quasi-static response can be used to define the boundary between bounded and unbounded dynamic responses. The main contribution of this study, compared with previous investigations reported in the literature, is that both pre-loading and dynamic effects have been included. 相似文献