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61.
为揭示不同抗流能力的大黄鱼(Larimichthyscrocea)肌肉基因表达水平的变化,筛选抗流相关基因,解析大黄鱼抗流性状形成的分子基础,收集福建福鼎沙埕湾主养区1 000尾大黄鱼,在设计制作的抗流实验水槽中,以流速1.0m/s为筛选条件,将抗流时间>30 min的大黄鱼归为抗流组(HM组),抗流时间<5 min的大黄鱼归为非抗流组(SM组),对其肌肉进行转录组分析,并统计抗流分组后48 h内大黄鱼的累计死亡率。转录组结果显示, HM组与SM组文库共富集到1806个差异表达基因(DEGs),其中1090个上调,716个下调。GO功能注释发现显著富集的条目主要集中在肌肉收缩相关功能, KEGG富集分析发现上调的DEGs主要富集在心肌收缩、氧化磷酸化、黏着斑、ECM-受体相互作用、AGE-RAGE、MAPK、心肌细胞中的肾上腺素能等相关通路;下调的DEGs主要富集在真核生物核糖体的发生、蛋白酶体、内质网中的蛋白加工、RNA转运、泛素介导的蛋白水解信号通路等。此外,RT-qPCR结果表明,随机选取的DEGs与RNA-seq结果的表达趋势一致。48h的累计死亡率结果显示,SM组...  相似文献   
62.
多倍体诱导会造成物种中不同基因的表达水平变化不同,以内参基因作为对照的相对实时定量PCR是检测基因表达水平变化的一种高效方法,这就需要对多倍体中的内参基因进行筛选以获得较适宜的参比基因。本研究以二倍体和三倍体牙鲆肌肉和脑组织为对象,以绝对定量及2–ΔCt等方法分析管家基因18S rRNA、β-肌动蛋白基因(β-actin),β-2-微球蛋白基因(b2m),3-磷酸甘油醛脱氢酶基因(gapdh),核糖体蛋白L17基因(rpl17),α-微管蛋白基因(α-tub),延伸因子-1-α基因(ef1-α)和泛素结合酶基因(ubc-e)的表达水平稳定性。绝对定量分析发现18S rRNA和α-tub的表达在牙鲆二、三倍体肌肉之间有显著性差异,其他基因的表达没有显著性差异,利用2–ΔCt分析方法分析发现只有α-tub的表达在二、三倍体牙鲆肌肉之间有显著性差异,其他基因的表达没有显著性差异;在牙鲆三倍体的脑和二倍体的脑之间,这些基因的表达均没有显著性差异。综合基因表达稳定性和Normfinder分析的结果发现,ef1-α是定量分析牙鲆三倍体的肌肉和二倍体的肌肉之间基因表达差异的较适合的内参基因,α-tububc-erpl17β-actin只在其中一种分析方法中符合要求,而其他基因不符合任何一种分析方法的要求;ef1-αrpl17是定量分析牙鲆二、三倍体脑组织之间基因表达差异的比较适合的内参基因,β-actin只在基因表达稳定性上符合要求,其他基因不符合任何一种分析方法的要求。本研究为分析牙鲆二倍体和三倍体同一组织之间基因表达的差异奠定了基础。  相似文献   
63.
64.
海洋硅藻硅质细胞壁结构的形成机理研究概述   总被引:5,自引:0,他引:5  
硅藻具有形态各异、结构复杂、精美绝伦的硅质细胞壁,是海洋中进行生物硅化最主要的生物体。硅质细胞壁的形成同样是一个错综复杂的过程,它涉及硅藻细胞将硅酸从胞外转运到胞内;硅酸在细胞内的转移;在硅沉积囊泡(SDV)中的浓缩沉积;最后合成具种类特异性的细胞壁。重点介绍硅酸转运基因(SITs)的分子特征与作用机制;与生物硅化相关的三种蛋白即硅体蛋白(frus-tulins)、亲硅蛋白(silaffins)和侧壁蛋白(pleuralins)的结构与功能;硅质结构如何在硅沉积囊泡内最终形成的模式。  相似文献   
65.
梅冥相 《地质论评》2012,58(5):937-951
早期"生物矿化作用"的概念,被定义为生物形成矿物的作用,并进一步分为生物控制和生物诱导两大类型。这个宽泛的概念,被修订为生物以生命活型(living form)影响矿物物质的沉淀作用;相应地,"生物矿物"是在严格的生物控制下、从局部环境中选择性地吸收元素并融合成具有生物功能构造的矿物。"有机矿化作用",则被定义为"与那些无生命活力的有机物质相关联的矿物形成作用"。与生物矿化作用相对应,有机矿化作用的产物被定义为"有机矿物",用来指那些通过有机聚合物、生物的和(或)非生物的有机化合物所导致的矿物沉淀作用,但是,有机矿物并非活着的细胞所直接形成。有机矿物与生物矿物的重要区别是,有机矿物没有被融合成受到生物严格控制的功能性构造。生物学家和化学家将生物矿化作用作为关注"生命体系中复杂的化学过程"的研究主题,超越了地质学范畴并使生物矿化作用的研究成为多学科关注的迷人领域,也大大促进了有机矿化作用的研究;考虑到有机矿物是沉积岩的重要组成,而且与生物的出现同步,还是潜在性的地外生命的遗迹,因此,从生物矿化作用衍生出的有机矿化作用的研究,自然就成为与生物矿化作用存在紧密关联的、地球生物学框架下又一个重要的研究主题  相似文献   
66.
Marine gas hydrate and cold-seep systems, which maintain a large amount of methane in the seabed, may critically impact the geochemical and ecological characteristics of the deep-sea sedimentary environment. However, it remains unclear whether marine sediments associated with gas hydrate harbor novel microbial communities that are distinct from those from typical marine sediments. In this study, microbial community structures thriving in sediments associated with and without gas hydrate in the eastern Japan Sea were characterized by 16S rRNA gene-based phylogenetic analyses. Uncultivated bacterial lineages of candidate division JS1 and a novel group NT-B2 were dominant in the sediments from gas hydrate-associated sites. Whereas, microbial populations from sites not associated with gas hydrate were mainly composed of Bacteroidetes, Nitrospirales, Chlamydiales, Chlorobiales, and yet-uncultured bacterial lineages of OD1 and TM06. The good correlation between the dominance of JS1 and NT-B2 and the association of gas hydrate could be attributed to the supply of more energetically favorable energy sources in gas-rich fluids from the deep subsurface than refractory organic matter of terrigenous and diatomaceous origin.  相似文献   
67.
Modern Ca:Mg carbonate stromatolites form in association with the microbial mat in the hypersaline coastal lagoon, Lagoa Vermelha (Brazil). The stromatolites, although showing diversified fabrics characterized by thin or crude lamination and/or thrombolitic clotting, exhibit a pervasive peloidal microfabric. The peloidal texture consists of dark, micritic aggregates of very high‐Mg calcite and/or Ca dolomite formed by an iso‐oriented assemblage of sub‐micron trigonal polyhedrons and organic matter. Limpid acicular crystals of aragonite arranged in spherulites surround these aggregates. Unlike the aragonite crystals, organic matter is present consistently in the dark, micritic carbonate comprising the peloids. This organic matter is observed as sub‐micron flat and filamentous mucus‐like structures inside the interspaces of the high‐Mg calcite and Ca dolomite crystals and is interpreted as the remains of degraded extracellular polymeric substances. Moreover, many fossilized bacterial cells are associated strictly with both carbonate phases. These cells consist mainly of 0·2 to 4 μm in diameter, sub‐spherical, rod‐like and filamentous forms, isolated or in colony‐like clusters. The co‐existence of fossil extracellular polymeric substances and bacterial bodies, associated with the polyhedrons of Ca:Mg carbonate, implies that the organic matter and microbial metabolism played a fundamental role in the precipitation of the minerals that form the peloids. By contrast, the lack of extracellular polymeric substances in the aragonitic phase indicates an additional precipitation mechanism. The complex processes that induce mineral precipitation in the modern Lagoa Vermelha microbial mat appear to be recorded in the studied lithified stromatolites. Sub‐micron polyhedral crystal formation of high‐Mg calcite and/or Ca dolomite results from the coalescence of carbonate nanoglobules around degraded organic matter nuclei. Sub‐micron polyhedral crystals aggregate to form larger ovoidal crystals that constitute peloids. Subsequent precipitation of aragonitic spherulites around peloids occurs as micro‐environmental water conditions around the peloids change.  相似文献   
68.
漂白粉消毒是凡纳滨对虾养殖源水常见的管控措施, 可有效控制病原菌传播; 然而,消毒会强烈扰动水体微生物群落,但源水细菌群落对漂白粉消毒的响应特征尚未阐明。在室内条件下, 设置高浓度(60 mg/L)和低浓度(20 mg/L)漂白粉消毒源水, 通过高通量测序及荧光定量PCR技术探究消毒后源水细菌群落、病原菌及抗生素抗性基因(ARGs)的动态响应规律。结果显示, 消毒后, 拟杆菌门(Bacteroidota)丰度上升, 高浓度组变形菌门(Proteobacteria)的丰度显著降低; 至第3天, 两组源水的细菌群落组成趋于一致。此外, 漂白粉消毒显著改变了源水的细菌群落结构及共现网络的复杂性。在控制水体病原菌方面, 消毒后病原菌的总丰度降低, 但种类增加, 高浓度漂白粉消毒对病原菌的抑制作用更加显著。漂白粉消毒对ARGs的去除具有选择性, 仅对sul1、floR、cfrtetQ有一定的去除作用, 且高、低浓度对ARGs的去除无差异。综上, 60 mg/L可以作为漂白粉消毒养殖源水的更好浓度选择。研究结果从微生物生态视角评价了不同浓度漂白粉的消毒作用, 可为对虾养殖生产中的源水管控提供理论支撑。  相似文献   
69.
70.
Calcium carbonate (CaCO3) crystals in their preferred orientation were obtained in BG11 culture media inoculated with Synechocystis sp. PCC6803 (inoculated BG11). In this study, the features of calcium carbonate deposition were investigated. Inoculated BGll in different calcium ion concentrations was used for the experimental group, while the BGll culture medium was used for the control group. The surface morphologies of the calcium carbonate deposits in the experimental and control groups were determined by scanning and transmission electron microscopy. The deposits were analyzed by electronic probe micro-analysis, Fourier transform infrared spectrum, X-ray diffraction, thermal gravimetric analysis and differential scanning calorimetry. The results show that the surfaces of the crystals in the experimental group were hexahedral in a scaly pattern. The particle sizes were micrometer-sized and larger than those in the control group. The deposits of the control group contained calcium (Ca), carbon (C), oxygen (O), phosphorus (P), iron (Fe), copper (Cu), zinc (Zn), and other elements. The deposits in the experimental group contained Ca, C, and O only. The deposits of both groups contained calcite. The thermal decomposition temperature of the deposits in the control group was lower than those in the experimental group. It showed that the CaCO3 deposits of the experimental group had higher thermal stability than those of the control group. This may be due to the secondary metabolites produced by the algae cells, which affect the carbonate crystal structure and result in a close-packed structure. The algae cells that remained after thermal weight loss were heavier in higher calcium concentrations in BGll culture media. There may be more calcium- containing crystals inside and outside of these cells. These results shall be beneficial for understanding the formation mechanism of carbonate minerals.  相似文献   
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