The Complete Sequence of Mitochondrial COⅡ Gene of Fenneropenaeus chinensis and Its Applicability as a Marker for Phylogenetic Analysis     

YU Shanshan KONG Xiaoyu LI Yulong XU Hui 《中国海洋大学学报(英文版)》2007,6(2):187-192

The complete mitochondrial cytochrome oxidase subunit Ⅱ （COⅡ） gene of Penaeinae shrimp Fenneropenaeus chinensis was cloned and sequenced. The gene is 688 bp in length and codes for 229 amino acids. It shows 83.2%, 87.0% and 83.8% sequence similarity to Marsupenaeus Japonicus, Penaeus monodon and Farfantepenaeus notialis, respectively. The A＋T content of the whole gene and that at the third position of codons are 64.7% and 78.2%, respectively. The phylogenetic relationship between F. chinensis and three other species representing genera Farfanatepenaeus, Marsupenaeus and Penaeus was analyzed. Results showed that the genetic distances among the four taxa ranged from 0.144 0 to 0.200 5, exceeding those estimated with COⅠ and partial 16S rRNA gene sequences among Marsupenaeus, Litopenaeus and Melicertus, and being therefore larger than the value among subgenera. It has been suggested that the COⅡ gene has a faster evolutionary rate than that of the COⅠ gene and partial 16S rRNA gene and could be used for phylogenetic analysis at genus or species level. The results of the present study indicated that Farfantepenaeus, Fenneropenaeus, Marsupenaeus and Penaeus are at a higher phylogenetic level than subgenus, which supports the opinion of the elevation of phylogenetic status of the four subgenera to genus level.  相似文献   

The journal Communications in Numerical Methods in Engineering with Biomedical Applications becomes the International Journal for Numerical Methods in Biomedical Engineering (IJNMBE) from 1st January 2010     

Perumal Nithiarasu  Rainald Löhner 《国际地质力学数值与分析法杂志》2009,33(16):1769-1770

Communications in Numerical Methods in Engineering, founded by Roland W. Lewis in 1985, will change its title to the ‘International Journal for Numerical Methods in Biomedical Engineering’ and has a revised Aims and Scope. Copyright © 2009 John Wiley & Sons, Ltd.  相似文献   

Electron-impact rotational and hyperfine excitation of HCN, HNC, DCN and DNC     

Alexandre Faure  Hemal N. Varambhia  Thierry Stoecklin  Jonathan Tennyson 《Monthly notices of the Royal Astronomical Society》2007,382(2):840-848

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Exopolysaccharide Production by Four Cyanobacterial Isolates and Preliminary Identification of These Isolates   总被引：2，自引：0，他引：2  

ZHANG Yunyi CHI Zhenming LU Weidong 《中国海洋大学学报(英文版)》2007,6(2):147-152

Four marine cyanobacterial isolates, named 104, 109, 113 and 115, from marine water off China＇s coast can release a large amount of exopolysaccharide （EPS） to medium. The effects of different components in medium on EPS production by the four isolates were investigated. Under the optimal condition, the EPS released by isolates 104,109, 113 and 115 reached 7.48 g L^-1, 8.33 g L^-1, 18.26 g L^-1, and 6.78 g L^-1 within 14 d,respectively. Based on the conventional identification methods for cyanobacteria,these isolates were assigned to genus Cyanothece.  相似文献   

Molecular and distribution data on the poorly known,elusive, cave mysid Harmelinella mariannae (Crustacea: Mysida)          下载免费PDF全文

Pierre Chevaldonné  Pierre‐Alexandre Rastorgueff  Defne Arslan  Christophe Lejeusne 《Marine Ecology》2015,36(3):305-317

Mediterranean underwater marine caves harbour abundant populations of several species of mysids that are increasingly used as biological models in ecological and evolutionary studies. One exception is the species Harmelinella mariannae, described in 1989 and then hardly ever again reported in the literature. We here provide the first data on the distribution of this poorly known taxon that, contrary to expectations for a rare brooding cave dweller, we now report from Madeira Island in the nearby Atlantic, to the easternmost parts of the Mediterranean. Brief behavioural observations are added, particularly its atypical solitary habits and its feeding behaviour as a high trophic level carnivore. Molecular characterization of the different specimens captured provided three sorts of information. Mitochondrial COI and 16S haplotypes suggest different colonization waves in the Mediterranean, with one group in the Eastern Basin, two in the Marseille region in the NW part of this sea, and another group with a very wide extension from Madeira to Liguria and Malta. Mitochondrial data also support that one of the groups in Marseille might have diverged as a cryptic species of Harmelinella. 18S rRNA gene displays a single common sequence to all specimens from the four groups, and seems to confirm the original proposed placement of this taxon within the subfamily Heteromysinae, not Leptomysinae.  相似文献   

南极半岛东北海域表层沉积有机质来源及其沉积环境     

韩喜彬  赵军  初凤友  潘建明  唐灵刚  许冬  边叶萍  葛倩 《海洋学报》2015,37(8):26-38

采用气相色谱-质谱技术对南极半岛东北海域海底表层沉积物的总有机碳、有机质碳同位素(δ13 Corg)和生物标志化合物等进行了测试分析。研究区表层沉积物总有机碳TOC平均值高于现代深海沉积物中的平均含量。δ13 Corg的变化说明该海域有机碳来源呈海洋水生生物来源和陆源混合的特征。正构烷烃的峰型分布、主峰碳、饱和烃轻重比C-21/C+22和(C21+C22)/(C28+C29)、甾烷组合和藿烷组合证实研究区西部表层沉积物有机质来源以陆源高等植物为主,其陆源可能来自于附近的南极半岛和南舍得兰群岛;研究区东部表层沉积物有机质来源偏以海源为主,且以低等浮游生物、藻类及细菌生物等海源输入为主。碳优势指数(Carbon preference index,CPI)、奇偶优势指数(Odd-even Predominance,OEP)和甾烷C29ααα20S/(20S+20R)比值显示研究区D1-7站位和D5-9沉积物有机质演化程度较高,D5-2和D2-4站位的有机质演化程度低,其他站位介于中间状态。饱和烃中姥鲛烷、植烷及其比值(Pr/Ph)等组合显示研究区西部以氧化-弱还原的沉积环境为主,其可能是受高温低盐别林斯高晋海水流和附近火山喷发的影响所致;研究区东部以还原—强还原沉积环境为主,可能是受低温高盐的威德尔底层水(WSBW)和威德尔海深层水(WSDW)影响所致。  相似文献   

条斑紫菜SSU 中内含子分析     

李星辰  徐佳杰  林中姮  沈颂东 《海洋科学》2015,39(3):12-18

根据GenBank中已知的条斑紫菜(Porphyra yezoensis)SSU和LSU r RNA基因序列分别设计引物,分别以混合个体和单个个体的基因组DNA以及c DNA为模板进行扩增,测序分析后推测SSU r RNA基因中的内含子转录后加工可能仍被保留,而在LSU r RNA基因上游序列中没有发现内含子。长511bp的内含子位于SSU r RNA基因序列的上游,其插入位点为TCTGGTG-CCAGCAGCC,内含子5′和3′端的核苷酸序列分别为AAC-和-ATGG。该内含子的剪接位点以及保守区P,Q,R,S与I型内含子是不同的。研究发现,在同种紫菜中,不同个体SSU基因中内含子的有无、分布及结构特征是不同的,说明内含子对于分类是不太适合的。但是内含子的长度以及核苷酸序列在种间又具有一定的特异性,可以为红藻种间以及种内亲缘关系较远的亚种和不同地理群的区分和鉴定提供参考。  相似文献   

基于傅里叶变换质谱的烃源岩成熟度评价方法及地质意义     

韩双彪  谢林丰  唐致远  李剑  王成善  Brian HORSFIELD 《地质学报》2023,97(5):1717-1721

<正>伴随非常规油气资源的勘探开发,油气资源开采的广度和深度进一步扩大,一定程度上缓解了我国油气供需矛盾、保障了我国能源安全,同时有力推动了能源结构战略转型。但同时也对能源地质研究工作提出了新的挑战。有机质成熟度是油气评价的重要参数之一,不同成熟阶段的有机质会对应产出不同成因、不同性质、不同质量的油气,如何准确评价沉积有机质成熟度是当前油气资源勘探开发工作的关键问题之一。前人在科研实践工作中从光学、化学、谱学等角度提出了适用条件各异的成熟度评价方法,在部分地质环境中获得了良好的应用效果,但已有的成熟度指标多受测定方法原理的制约导致其适用性不同程度受限(肖贤明等,2020),制约了油气资源的高质量勘探开发。  相似文献   

棘皮动物线粒体基因组的基因重排、分子标记及系统发生分析     

申欣  田美  孟学平  程汉良  阎斌伦 《海洋学报》2013,35(5):137-146

棘皮动物(echinoderms)是海洋生境中所特有的无脊椎动物重要类群,本文全面比较分析了棘皮动物29个物种的线粒体全基因组。线粒体基因组主编码基因的分析结果显示,海胆纲Echinoidea和海参纲Holothuroidea物种的基因排列完全相同;海星纲Asteroidea物种之间的基因排列也完全相同,然而与海胆纲、海参纲相比,存在一个长片段的倒位。海百合纲Crinoidea的栉羽星Phanogenia gracilis和花形羽枝Florometra serratissima主编码基因的基因排列完全相同,地中海海羊齿和海百合Neogymnocrinus richeri与此相比,均存在一个蛋白质编码基因(nad4L)的易位。蛇尾纲Ophiuroidea真蛇尾目Ophiurida的3个科(阳遂足科Amphiuridae、辐蛇尾科Ophiactidae和栉蛇尾科Ophiocomidae)主编码基因的基因排列完全相同,而同属于真蛇尾目,另外一个科(真蛇尾科Ophiuridae)的白色真蛇尾Ophiura albida和灰色真蛇尾Ophiura lutkeni,与同目的前3个科相比,存在3个蛋白质编码基因(nad1、nad2和cob)的倒位。蛇尾纲蔓蛇尾目Euryalida的海盘Astrospartus mediterraneus,与真蛇尾目5个线粒体基因组相比,存在主编码基因的重排。棘皮动物线粒体单基因的变异位点特征显示,nad5、nad4和nad2基因是理想的分子标记基因。基于29个线粒体基因组的氨基酸序列,通过两种方法(邻接法和最大似然法)所构建系统发生树的拓扑结构完全一致。支持其下分的5个纲(蛇尾纲、海参纲、海胆纲、海星纲和海百合纲)均为单系群。线粒体基因组的数据支持棘皮动物动物在纲层次的亲缘关系为:(((海胆纲+海星纲)+海参纲)+蛇尾纲)+海百合纲,海百合纲作为棘皮动物中最为古老的类群,位于系统发生树的根部。基于线粒体基因组构建的系统发生树,支持所有的科均为单系群;综合系统发生树及主编码基因的基因重排分析,均支持真蛇尾目并非单系发生,真蛇尾目的有效性还值得今后深入研究。  相似文献   

可口革囊星虫(Phascolosoma esculenta)铁结合     

刘艳  侯付景  周君  王中华  李太武  苏秀榕 《海洋与湖沼》2013,44(4):973-979

以克隆获得的可口革囊星虫(Phasolosma esculenta)、枝吻纽虫(Dendrorhynchus zhejiangensis)、泥蚶(Tegillarca granosa)、缢蛏(Sinonovacula constricta)、仿刺参(Apostichopus japonicus)和白肛海地瓜(Acaudina leucoprocta)6种无脊椎动物的铁结合蛋白基因为基础, 通过NCBI检索下载相应的氨基酸序列, 采用SingalP程序查找信号肽, 用TMHMM程序搜寻预测跨膜区, 采用Clustal W程序多序列比对, 构建进化树。对其编码蛋白的信号肽、跨膜区以及磷酸化位点等进行分析。结果表明, 6种动物的铁结合蛋白都没有信号肽, 也无跨膜区, 不可能是膜上的受体或定位于膜上, 均为胞外蛋白。泥蚶的ferritin有4个磷酸化位点, 仿刺参ferritin有10个, 枝吻纽虫有8个, 白肛海地瓜有9个, 可口革囊星虫和缢蛏的ferritin未搜寻到磷酸化位点。6种铁结合蛋白的疏水性有一定的差异, 最大值在1.0—1.6之间, 最小值在?3.3—?2.8之间。可口革囊星虫和仿刺参的铁结合区域特征序列完全相同, 与文昌鱼、缢蛏、泥蚶、牡蛎、盘鲍有2个氨基酸差异, 与人、小家鼠和叉尾有1个氨基酸差异。  相似文献