Habitability analyses of aquatic bacteria     

Md. Nurul Haider  Masahiko Nishimura  Minoru Ijichi  Ching-chia Yang  Wataru Iwasaki  Kazuhiro Kogure 《Journal of Oceanography》2018,74(2):197-207

Habitability is defined as an ability of an organism to inhabit different environments. Habitability of organisms, however, cannot be inferred from analyses such as a whole genome or community structures. A recently developed database, the MetaMetaDB, gives us information from what kind of environments one particular 16S rRNA sequence data has ever been obtained, and thus enables us to infer the habitability of the bacterium in question. In order to check the applicability of this database to study the habitability of aquatic bacteria, samples collected at two Naka River stations, one estuarine station from Naka River Estuary, two coastal stations at Oarai in Ibaraki Prefecture, Japan and one station in the Kuroshio Current of the western North Pacific were examined. The phylotypes were tracked against the MetaMetaDB and it was reasonably found that the low-salinity stations were dominated by sequences with “freshwater and groundwater”, “human” and “wastewater” habitat identities, while the high-salinity stations were dominated by those with a “marine” identity. The phylotypes of low-salinity stations with a particular habitat identity were absent or rare in the high-salinity stations and vice versa. The MetaMetaDB also showed that sequences of Cyanobacteria or related phylogenetic groups may be present in the human gut, as well as the probable distribution of the relatives (ancestors/descendants/siblings) of some bacteria. These overall findings proved that the MetaMetaDB is useful as a new tool to infer microbial habitability and it gives us new information on the possible origin and ecology of microorganisms in the environments.  相似文献   

Tide-related Changes in mRNA Abundance of Aromatases and Estrogen Receptors in the Ovary and Brain of the Threespot Wrasse <Emphasis Type="Italic">Halichoeres trimaculatus</Emphasis>     

Dae-Ju Oh  Sung-Pyo Hur  Selma Bouchekioua  Yuki Takeuchi  Shingo Udagawa  Neelakanteswar Aluru  Yong-Ju Park  Ji-Gweon Park  Se-Jae Kim  Thomas W. Moon  Mathilakath M. Vijayan  Akihiro Takemura 《Ocean Science Journal》2018,53(2):239-249

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Dark energy cosmological models with cosmic string     

T. Vinutha  V. U. M. Rao  Bekele Getaneh  Molla Mengesha 《Astrophysics and Space Science》2018,363(9):188

In this paper we have studied the anisotropic Kantowski-Sachs, locally rotationally symmetric (LRS) Bianchi type-I and LRS Bianchi type-III geometries filled with dark energy and one dimensional cosmic string in the Saez-Ballester theory of gravitation. To get physically valid solution we take hybrid expansion law of the average scale factor which is a product of power and exponential type of functions that results in time dependent deceleration parameter (\(q\)). The equation of state parameter of dark energy (\(\omega _{\mathit{de}}\)) has been discussed and we have observed that for the three models it crosses the phantom divide line (\(\omega _{\mathit{de}} = -1\)) and shows quintom like behavior. The density of dark energy (\(\rho _{\mathit{de}}\)) is an increasing function of redshift and remains positive throughout the evolution of the universe for the three models. Moreover in Kantowski-Sachs and LRS Bianchi type-I geometries the dark energy density dominates the string tension density (\(\lambda \)) and proper density (\(\rho \)) throughout the evolution of the universe. The physical and geometrical aspects of the statefinder parameters (\(r,s\)), squared speed of sound (\(v_{s}^{2} \)) and \(\omega _{\mathit{de}}\)–\(\omega ^{\prime }_{\mathit{de}}\) plane are also discussed.  相似文献   

An on Orbit Determination of Point Spread Functions for the <Emphasis Type="Italic">Interface Region Imaging Spectrograph</Emphasis>     

Hans Courrier  Charles Kankelborg  Bart De Pontieu  Jean-Pierre Wülser 《Solar physics》2018,293(9):125

Using the 2016 Mercury transit of the Sun, we characterize on orbit spatial point spread functions (PSFs) for the Near- (NUV) and Far- (FUV) Ultra-Violet spectrograph channels of NASA’s Interface Region Imaging Spectrograph (IRIS). A semi-blind Richardson–Lucy deconvolution method is used to estimate PSFs for each channel. Corresponding estimates of Modulation Transfer Functions (MTFs) indicate resolution of 2.47 cycles/arcsec in the NUV channel near 2796 Å and 2.55 cycles/arcsec near 2814 Å. In the short (\({\approx}\,1336~\mathring{\mathrm{A}}\)) and long (\({\approx}\,1394~\mathring{\mathrm{A}}\)) wavelength FUV channels, our MTFs show pixel-limited resolution (3.0 cycles/arcsec). The PSF estimates perform well under deconvolution, removing or significantly reducing instrument artifacts in the Mercury transit spectra. The usefulness of the PSFs is demonstrated in a case study of an isolated explosive event. PSF estimates and deconvolution routines are provided through a SolarSoft module.  相似文献   

Template-based classification of SDSS-<Emphasis Type="BoldItalic">GALEX</Emphasis> point sources     

Ayesha Anjum  Mousumi Das  Jayant Murthy  S. B. Gudennavar  Rajesh Gopal  S. G. Bubbly 《Journal of Astrophysics and Astronomy》2018,39(5):61

We have classified a sample of 37,492 objects from SDSS into QSOs, galaxies and stars using photometric data over five wave bands (u, g, r, i and z) and UV GALEX data over two wave bands (near-UV and far-UV) based on a template fitting method. The advantage of this method of classification is that it does not require any spectroscopic data and hence the objects for which spectroscopic data is not available can also be studied using this technique. In this study, we have found that our method is consistent by spectroscopic methods given that their UV information is available. Our study shows that the UV colours are especially important for separating quasars and stars, as well as spiral and starburst galaxies. Thus it is evident that the UV bands play a crucial role in the classification and characterization of astronomical objects that emit over a wide range of wavelengths, but especially for those that are bright at UV. We have achieved the efficiency of 89% for the QSOs, 63% for the galaxies and 84% for the stars. This classification is also found to be in agreement with the emission line diagnostic diagrams.  相似文献   

Maximizing the community exploitation of the VLTI 2nd-generation instruments     

Stefan Kraus  Paulo Garcia  Guy Perrin 《Experimental Astronomy》2018,46(3):511-516

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Chemical and biological features of the saline Lake Krasnovishnevoye (Baraba,Russia) in comparison with Lake Malinovoe (Kulunda,Russia): a reconnaissance study     

Komova  Anastasia  Melnikova  Anna  Namsaraev  Zorigto  Romanov  Roman  Strakhovenko  Vera  Ovdina  Ekaterina  Ermolaeva  Nadezhda 《中国海洋湖沼学报》2018,36(6):1993-2001

The Baraba and Kulunda steppes are located in southwestern Siberia in an area with an arid continental climate. This paper presents results of the first study of the hypersaline Lake Krasnovishnevoye(Baraba steppe, TDS(total dissolved solids)=297 g/L, pH 7.88). The major chemical, mineralogical and biological features of the lake were studied and compared to those of Lake Malinovoe, a typical saline neutral lake of Kulunda steppe(TDS=396 g/L, pH 7.63). The phytoplankton composition and the culturable diversity of anoxygenic phototrophic bacteria from Lake Krasnovishnevoye correspond to the ones in the Kulunda lakes. Nevertheless, the peculiarities of water composition and regime of Lake Krasnovishnevoye reduce the biodiversity to prokaryotes and unicellular algae.  相似文献   

Normal fault growth influenced by basement fabrics: The importance of preferential nucleation from pre‐existing structures     

Luca Collanega  Katherine Siuda  Christopher A.‐L. Jackson  Rebecca E. Bell  Alexander J. Coleman  Antje Lenhart  Craig Magee  Anna Breda 《Basin Research》2019,31(4):659-687

Reactivation of pre‐existing intra‐basement structures can influence the evolution of rift basins, yet the detailed kinematic relationship between these structures and overlying rift‐related faults remains poorly understood. Understanding the kinematic as well as geometric relationship between intra‐basement structures and rift‐related fault networks is important, with the extension direction in many rifted provinces typically thought to lie normal to fault strike. We here investigate this problem using a borehole‐constrained, 3D seismic reflection dataset from the Taranaki Basin, offshore New Zealand. Excellent imaging of intra‐basement structures and a relatively weakly deformed, stratigraphically simple sedimentary cover allow us to: (a) identify a range of interaction styles between intra‐basement structures and overlying, Plio‐Pleistocene rift‐related normal faults; and (b) examine the cover fault kinematics associated with each interaction style. Some of the normal faults parallel and are physically connected to intra‐basement reflections, which are interpreted as mylonitic reverse faults formed during Mesozoic subduction and basement terrane accretion. These geometric relationships indicate pre‐existing intra‐basement structures locally controlled the position and attitude of Plio‐Pleistocene rift‐related normal faults. However, through detailed 3D kinematic analysis of selected normal faults, we show that: (a) normal faults only nucleated above intra‐basement structures that experienced late Miocene compressional reactivation, (b) despite playing an important role during subsequent rifting, intra‐basement structures have not been significantly extensionally reactivated, and (c) preferential nucleation and propagation of normal faults within late Miocene reverse faults and folds appears to be the key genetic relationship between contractionally reactivated intra‐basement structures and rift‐related normal faults. Our analysis shows that km‐scale, intra‐basement structures can control the nucleation and development of newly formed, rift‐related normal faults, most likely due to a local perturbation of the regional stress field. Because of this, simply inverting fault strike for causal extension direction may be incorrect, especially in provinces where pre‐existing, intra‐basement structures occur. We also show that a detailed kinematic analysis is key to deciphering the temporal as well as simply the spatial or geometric relationship between structures developed at multiple structural levels.  相似文献   

Assessments on slope instabilities triggered by engineering excavations near a small settlement (Turkey)     

TUNCAY Ergün 《山地科学学报》2018,15(1):114-129

In this study, the mechanisms of slope instabilities triggered by engineering excavations at location of a planned tunnel portal in the northwest region of Turkey were assessed, and stability of the current slopes which has impacts on safety of a settlement (village) and agricultural fields was investigated. In the first stage of the study, in order to identify the geological units and structural properties of the sedimentary rocks in the area, to clarify the mechanisms of instabilities and to characterize discontinuity and rock mass properties field works were conducted. In this content, geotechnical boreholes, geophysical explorations between the boreholes, line surveys to explore discontinuity properties, preparation of slope profiles using topographical techniques and sampling of rock blocks and discontinuity planes were performed. In the second stage, laboratory tests were carried out on the samples to determine the geomechnical properties of the slope forming materials and discontinuities. Then, back analyses of the instabilities were made to assess the responsible shear strength parameters of the geological units during failures by considering laboratory shear test results too. Based on the backanalyses of the failures, the strength properties of the slope debris were estimated, and it has been clarified that the residual shear strength properties are the factors controlling slip mechanism along the beddings. Following the stability analyses, it is understood that a further instability along the mass or bedding planes in the failed and redesigned area are not expected, if the current slope geometry is not changed. However, safety factor calculated for the slope in the debris is 1.1 which is well below the recommended value in the literature. The minimum safety factor for currently stable slopes which were cut at the eastern part of the failed area is 1.22 which is also less than that suggested in literature. Some remedial measures such as mini-pile or slope flattening are suggested after analyses to increase the factor of safety for this part below the settlement.  相似文献   

Global-Mode Analysis of Full-Disk Data from the <Emphasis Type="Italic">Michelson Doppler Imager</Emphasis> and the <Emphasis Type="Italic">Helioseismic and Magnetic Imager</Emphasis>     

Timothy P. Larson  Jesper Schou 《Solar physics》2018,293(2):29

Building upon our previous work, in which we analyzed smoothed and subsampled velocity data from the Michelson Doppler Imager (MDI), we extend our analysis to unsmoothed, full-resolution MDI data. We also present results from the Helioseismic and Magnetic Imager (HMI), in both full resolution and processed to be a proxy for the low-resolution MDI data. We find that the systematic errors that we saw previously, namely peaks in both the high-latitude rotation rate and the normalized residuals of odd \(a\)-coefficients, are almost entirely absent in the two full-resolution analyses. Furthermore, we find that both systematic errors seem to depend almost entirely on how the input images are apodized, rather than on resolution or smoothing. Using the full-resolution HMI data, we confirm our previous findings regarding the effect of using asymmetric profiles on mode parameters, and also find that they occasionally result in more stable fits. We also confirm our previous findings regarding discrepancies between 360-day and 72-day analyses. We further investigate a six-month period previously seen in \(f\)-mode frequency shifts using the low-resolution datasets, this time accounting for solar-cycle dependence using magnetic-field data. Both HMI and MDI saw prominent six-month signals in the frequency shifts, but we were surprised to discover that the strongest signal at that frequency occurred in the mode coverage for the low-resolution proxy. Finally, a comparison of mode parameters from HMI and MDI shows that the frequencies and \(a\)-coefficients agree closely, encouraging the concatenation of the two datasets.  相似文献