Habitability analyses of aquatic bacteria     

Md. Nurul Haider  Masahiko Nishimura  Minoru Ijichi  Ching-chia Yang  Wataru Iwasaki  Kazuhiro Kogure 《Journal of Oceanography》2018,74(2):197-207

Habitability is defined as an ability of an organism to inhabit different environments. Habitability of organisms, however, cannot be inferred from analyses such as a whole genome or community structures. A recently developed database, the MetaMetaDB, gives us information from what kind of environments one particular 16S rRNA sequence data has ever been obtained, and thus enables us to infer the habitability of the bacterium in question. In order to check the applicability of this database to study the habitability of aquatic bacteria, samples collected at two Naka River stations, one estuarine station from Naka River Estuary, two coastal stations at Oarai in Ibaraki Prefecture, Japan and one station in the Kuroshio Current of the western North Pacific were examined. The phylotypes were tracked against the MetaMetaDB and it was reasonably found that the low-salinity stations were dominated by sequences with “freshwater and groundwater”, “human” and “wastewater” habitat identities, while the high-salinity stations were dominated by those with a “marine” identity. The phylotypes of low-salinity stations with a particular habitat identity were absent or rare in the high-salinity stations and vice versa. The MetaMetaDB also showed that sequences of Cyanobacteria or related phylogenetic groups may be present in the human gut, as well as the probable distribution of the relatives (ancestors/descendants/siblings) of some bacteria. These overall findings proved that the MetaMetaDB is useful as a new tool to infer microbial habitability and it gives us new information on the possible origin and ecology of microorganisms in the environments.  相似文献   

Postglacial stratigraphic evolution of a current-influenced sandy shelf: offshore Kujukuri strandplain,central Japan     

Naohisa Nishida  Taku Ajioka  Ken Ikehara  Rei Nakashima  Hajime Katayama  Tomoyuki Sato  Seishiro Furuyama  Toru Tamura 《Sedimentology》2020,67(1):559-575

Sandy shelf sediments are important elements of clastic sedimentary systems because of their wide distribution in the geological record and their significance as hydrocarbon reservoirs. Although many studies have investigated shelf sediments influenced by waves or tidal currents, little is known about shelf sediments influenced by oceanic currents, particularly their lithofacies characteristics and stratigraphic evolution. This study investigated the stratigraphic evolution of shelf sediments off the Kujukuri strandplain facing the Pacific Ocean, which is influenced by the strong Kuroshio Current. Sediment cores were obtained from six locations on the Kujukuri shelf (34 to 124 m water depth) using a vibrocorer. The dominant lithofacies is mud-free sand with low-angle cross-lamination associated with alternating beds of finer and coarser sand with cross-lamination. These display depositional processes influenced by storm waves and the Kuroshio Current, respectively. This finding is consistent with the previously presented modern and historical observations of the Kuroshio Current and estimates of the storm-wave base. Radiocarbon dates show that the sediment succession formed during the last transgressive and highstand stages after 13·1 ka. The depositional processes during the stages represent a transition from storm waves with abundant sediment supply to both storm waves and the Kuroshio Current with sediment starvation mainly due to its trapping in the strandplain. Comparison to other Holocene–Modern shelf systems suggests that the sandy shelf successions are strongly influenced by oceanic currents under conditions of limited riverine input and open coastal geometry. The resultant sand-dominated succession is characterized by reversal of the proximal to distal grain-size trend compared to the fining for most other recognized wave/storm-dominated shelf successions. This is because of seaward increase in the influence of the Kuroshio Current. Thus, shelf deposits are naturally complex, and these may be further complicated by the additional influence of oceanic currents above the usual wave-dominated and tide-dominated end members.  相似文献   

Geological and geophysical studies of the Agoudal impact structure (Central High Atlas,Morocco): New evidence for crater size and age     

Houda El Kerni  Hasnaa Chennaoui Aoudjehane  David Baratoux  Mohammed Aoudjehane  Andr Charrire  Hassan Ibouh  Pierre Rochette  Yoann Quesnel  Minoru Uehara  Thomas Kenkmann  Gerwin Wulf  Michael Poelchau  Van Binh Nguyen  Maria Aboulahris  Samira Makhoukhi  Georges Aumaître  Didier Bourls  Karim Keddadouche 《Meteoritics & planetary science》2019,54(10):2483-2509

Since the discovery of shatter cones (SCs) near the village of Agoudal (Morocco, Central High Atlas Mountains) in 2013, the absence of one or several associated circular structures led to speculation about the age of the impact event, the number, and the size of the impact crater or craters. Additional constraints on the crater size, age, and erosion rates are obtained here from geological, structural, and geophysical mapping and from cosmogenic nuclide data. Our geological maps of the Agoudal impact site at the scales of 1:30,000 (6 km²) and 1:15,000 (2.25 km²) include all known occurrences of SCs in target rocks, breccias, and vertical to overturned strata. Considering that strata surrounding the impact site are subhorizontal, we argue that disturbed strata are related to the impact event. Three types of breccias have been observed. Two of them (br1‐2 and br2) could be produced by erosion–sedimentation–consolidation processes, with no evidence for impact breccias, while breccia (br1) might be impact related. The most probable center of the structure is estimated at 31°59′13.73?N, 5°30′55.14?W using the concentric deviation method applied to the orientation of strata over the disturbed area. Despite the absence of a morphological expression, the ground magnetic and electromagnetic surveys reveal anomalies spatially associated with disturbed strata and SC occurrences. The geophysical data, the structural observations, and the area of occurrence of SCs in target rocks are all consistent with an original size of 1.4–4.2 km in diameter. Cosmogenic nuclide data (³⁶Cl) constrain the local erosion rates between 220 ± 22 m Ma^?1 and 430 ± 43 m Ma^?1. These erosion rates may remove the topographic expression of such a crater and its ejecta in a time period of about 0.3–1.9 Ma. This age is older than the Agoudal iron meteorite age (105 ± 40 kyr). This new age constraint excludes the possibility of a genetic relationship between the Agoudal iron meteorite fall and the formation of the Agoudal impact site. A chronolgy chart including the Atlas orogeny, the alternation of sedimentation and erosion periods, and the meteoritic impacts is presented based on all obtained and combined data.  相似文献   

The spatial correlation between earthquakes and landslides in Hokkaido (Japan), a GIS-based analysis of the past and the future     

Lulseged Ayalew  Minoru Kasahara  Hiromitsu Yamagishi 《Landslides》2011,8(4):433-448

Although earthquakes are thought to be one of the factors responsible for the occurrence of landslides in Hokkaido, there exist no enough records which can allow correlating many of the old slope failures in the island with earthquakes. In the absence of these records, an attempt was done in this study to use the abundance, frequency, magnitude, depth, and distribution of historical earthquakes to deduce that many of the slope failures in the region were triggered by strong and continuous seismicity. The determination of the zones of influences of selected earthquakes using an existing empirical function has also supported this conclusion. Moreover, the use of a 10% probability of exceedance of earthquake intensity in 50 years, and the geological and slope maps has allowed preparing a landslide hazard map which explains the role of future earthquakes in the formation of slope failures. The result indicates a high probability of occurrences of landslides in the hilly regions of the southeastern part of Hokkaido due to expected strong seismicity and earthquake intensities in these areas. On the other hand, the low level of intensity in the north has given rise to low probability of landslide hazard. There are also places in the center of the island and high intensity regions in the east where the probability of landslide hazard was influenced by the contribution of the geological and slope maps.  相似文献   

Seasonal and spatial variation in the denitrifying activity in estuarine and lagoonal sediments     

Yukiko Senga  Minoru Okumura  Yasushi Seike 《Journal of Oceanography》2010,66(1):155-160

We have elucidated the seasonal and spatial variation in the potential denitrifying activity in estuarine and coastal lagoonal sediments in Lakes Shinji and Nakaumi, Japan. The denitrifying activity increased from summer through autumn and was positively correlated with the temperature of the overlying water at all sites except one, where the bottom was always more reductive than at the other sites and there was no NO₃ ⁻ as a substrate for denitrification from spring to autumn. Moreover, the relationship between the denitrifying activity and the distance from the sea showed different trends in estuarine and lagoonal sediments. These spatial differences indicate that different factors regulate the denitrification in estuarine and lagoonal sediments. Denitrifying activity in estuarine sediment was regulated by the discharge of freshwater containing NO₃ ⁻ or organic matter, while in the lagoonal sediments the occurrence of nitrification via the intrusion of oxic seawater into the reductive sediment appears to be a key requirement for the process of denitrification. Therefore, the denitrifying activity in the lagoonal sediment appears to be greater near the sea. Water intrusion is one of the key factors controlling denitrification in coastal marine ecosystems by affecting the supply of substrate available for denitrification.  相似文献   

Holocene migration of oceanic front systems over the Conrad Rise in the Indian Sector of the Southern Ocean     

Kota Katsuki  Minoru Ikehara  Yusuke Yokoyama  Masako Yamane  Boo‐Keun Khim 《第四纪科学杂志》2012,27(2):203-210

There has been limited previous research about Holocene climate variability in the Indian Sector of the Southern Ocean. Here we examine centennial‐scale changes in diatom assemblages and stable isotopic ratios since 10 000 cal a BP in a high‐accumulation‐rate sediment core from the Conrad Rise. Although abundances of dominant diatom taxa (Fragilariopsis kerguelensis and Thalassiothrix antarctica) are comparatively constant, relative abundances of secondary taxa fluctuate. Before c. 9900 cal a BP, winter sea‐ice and cold water covered the Conrad Rise. Following deglaciation the sea‐ice retreated from the Conrad Rise, lagging that of the Atlantic and eastern Indian Sectors by about 1500 a. The Polar Front moved southward during the early Holocene optimum and north Antarctic Zone waters covered the Conrad Rise for about 650 a. After 9300 cal a BP, solar insolation strongly influenced sea surface temperature and primary productivity in the Southern Ocean. In the high‐latitude Indian Sector, productivity increased 1500 a after the onset of late Holocene neoglaciation. Periodic δ¹⁸O and cold‐water diatom taxa spikes (at intervals of 200 and 300–500 a, respectively) occurred after 9300 cal a BP, probably associated with solar activity. Fluctuations in short‐term sea surface temperature and cold‐water taxa are synchronous with changes in δD observed in an east Antarctic ice core. Copyright © 2011 John Wiley & Sons, Ltd.  相似文献   

Evidence of the restricted gene flow within a small spatial scale in the Japanese common intertidal goby Chaenogobius annularis     

Shotaro Hirase  Manami Kanno  Minoru Ikeda  Akihiro Kijima 《Marine Ecology》2012,33(4):481-489

Elucidating the scale of gene flow among populations is an important challenge for understanding the ecological dynamics and local adaptation of marine organisms. We assessed whether gene flow is restricted even at a small spatial scale in the Japanese common intertidal goby Chaenogobius annularis, using highly polymorphic DNA markers, involving the mitochondrial DNA (mtDNA) control region and 15 microsatellite DNA (msDNA), because past ecological studies have suggested low dispersal ability for rocky intertidal fishes. We found significant heterogeneities between four neighboring local populations by both mtDNA and msDNA analyses. In addition, no genetic heterogeneity was detected by either method across generations within a population; it was considered that such genetic differentiation is retained across generations and that the gene flow of this species is restricted to within a radius of a few kilometers. This is the first report showing a clear genetic subdivision in rocky intertidal fish.  相似文献   

Solar vector magnetograms of the Okayama Astrophysical Observatory     

Mitsugu Makita  Shigeo Hamana  Keizo Nishi  Minoru Shimizu  Takashi Sakurai  Kiyoto Shibasaki 《Astrophysics and Space Science》1986,118(1-2):163-167

The title instrument is mounted on the 65 cm solar Coudé telescope at the Okayama observatory. Observation is usually of the Fei 5250 Å line. The data obtained are briefly described.Paper presented at the IAU Third Asian-Pacific Regional Meeting, held in Kyoto, Japan, between 30 September–6 October, 1984.  相似文献   

The gravitational instability in the dust layer of a protoplanetary disk:: axisymmetric solutions for nonuniform dust density distributions in the direction vertical to the midplane     

Fumiharu Yamoto  Minoru Sekiya 《Icarus》2004,170(1):180-192

The gravitational instability in the dust layer of a protoplanetary disk with nonuniform dust density distributions in the direction vertical to the midplane is investigated. The linear analysis of the gravitational instability is performed. The following assumptions are used: (1) One fluid model is adopted, that is, difference of velocities between dust and gas are neglected. (2) The gas is incompressible. (3) Models are axisymmetric with respect to the rotation axis of the disk. Numerical results show that the critical density at the midplane is higher than the one for the uniform dust density distribution by Sekiya (1983, Prog. Theor. Phys. 69, 1116-1130). For the Gaussian dust density distribution, the critical density is 1.3 times higher, although we do not consider this dust density distribution to be realistic because of the shear instability in the dust layer. For the dust density distribution with a constant Richardson number, which is considered to be realized due to the shear instability, the critical density is 2.85 times higher and is independent of the value of the Richardson number. Further, if a constant Richardson number could decrease to the order of 0.001, the gravitational instability would be realized even for the dust to gas surface density ratio with the solar abundance. Our results give a new restriction on planetesimal formation by the gravitational instability.  相似文献   

Preservation of the shell matrix protein dermatopontin in 1500 year old land snail fossils from the Bonin islands     

Isao Sarashina  Yoshiki Kunitomo  Minoru Iijima  Satoshi Chiba  Kazuyoshi Endo   《Organic Geochemistry》2008,39(12):1742

Organic molecules such as proteins can be preserved in certain fossils. The bulk properties of fossil proteins of both vertebrates and invertebrates have been studied for over half a century. Named proteins have so far been identified, however, only in vertebrate fossils, such as collagen from mammoth bones. Using immunological assays, we examined 1500 year old fossils of the extinct land snail Mandarina luhuana from the Bonin islands for the presence of dermatopontin, a molluscan shell matrix protein. First, we examined the shell microstructure and mineralogy of the fossil shells using scanning electron microscopy (SEM) and powder X-ray diffraction (XRD) in order to estimate the extent of diagenetic alteration. The results suggest that the original microstructure and mineralogy of the shells are preserved. Antiserum raised against the Type-1 dermatopontin fragment of the living land snail Euhadra brandtii showed significant immunological reactivity with the extracts from the fossil shells of M. luhuana. Immunological binding curves drawn for the shell extracts of extant M. aureola and the extinct M. luhuana confirmed the presence of dermatopontin in the fossil shells and provided an estimate that about 75–98% of the original dermatopontin was lost from the M. luhuana fossils. This is the first report of a named protein being identified in invertebrate fossils.  相似文献