排序方式： 共有84条查询结果，搜索用时 78 毫秒
1.
魁蚶线粒体16S rRNA和COI基因片段序列测定及其应用前景 总被引：10，自引：0，他引：10
魁蚶（Ｓｃａｐｈａｒｃａｂｒｏｕｇｈｔｏｎｉｉ）是蚶科贝类的一种大型经济种类，主要分布于我国、日本和朝鲜半岛及俄罗斯东南部沿海。在我国，主要分布于辽宁、河北和山东沿海，生活在３～５０ｍ（多为２０～３０ｍ）水深的软泥或泥沙质海底，是我国北方沿海重要的经济贝类之一。但但有有关关其其自自然然群群体体的的遗遗传传变变异异及及群群体体间间遗遗传传分分化化等等方方面面的的研研究究不不多多 ;;同同时时，，作作者者和和日日本本研研究究者者发发现现，，中中国国、、韩韩国国和和日日本本魁魁蚶蚶群群体体在在形形态态和… 相似文献
2.
萼花臂尾轮虫(Brachionus calyciflorus)COI基因序列变异及种群遗传结构分析 总被引：4，自引：0，他引：4
利用线粒体细胞色素氧化酶亚基Ⅰ(cytochrome oxidaseⅠ，COI)基因序列对北京地区和江汉湖群部分湖泊萼花臂尾轮虫(Brachionus calyciflorus)种群遗传结构进行了初步分析。以特异引物进行PCR扩增，获得了661bp的基因片断序列，所得序列与Genbank中B．calyciflorus COI序列的同源性为82％—93％。在6个种群中，共获得了15种单元型。序列分析结果表明，不同季节单元型之间的遗传距离较大(0．248-0．263)，而在同一季节单元型之间遗传距离较小(0．002-0．031)。种群遗传结构分析表明，各种群之间无共享的单元型，同一季节不同湖泊种群之间存在着一定程度的遗传分化，但未按照地理位置形成明显的地理格局。按采样时间分组进行AMOVA分析，组间差异高达94．09％；DH-I与其他种群之间存在着明显的遗传分化。同一湖泊不同季节样品之间，遗传变异较大，这表明在同一湖泊存在着不同基因型的轮虫休眠卵，当环境条件发生了变化后，不同基因型之间会发生更迭。 相似文献
3.
3种蛏类线粒体16SrRNA和COI基因片段的序列比较及其系统学初步研究 总被引：15，自引：0，他引：15
对3种蛏类大竹蛏（Solen grandis），长竹蛏（Solen strictus）和小刀蛏（Cultellus attenuatus）的线粒体16SrRNA和COI基因片段序列进行了比较并对其系统学进行了初步研究。得到的序列总长度分别为472-481bp（16S）和658bp（COI）。3种蛏序列的碱基组成均显示出较高的A＋T比例（16SrRNA基因62．1％；COI基因62．8％）。对位排序比较表明，16SrRNA片段种内个体间变异较小，3种类间存在128个碱基变异位点（其中包括127个简约信息位点）和5个插入／缺失位点，总共12个碱基长；COI片段有200个碱基存在变异，其中包括191个简约信息位点，不存在任何插入／缺失位点。数据分析结果表明16SrRNA和COI基因片段大竹蛏与长竹蛏两片段的遗传距离分别为0．0856和0．1712，两竹蛏类与小刀蛏的遗传距离分别为0．3054，0．2798和0．2662，0．2933。作者认为小刀蛏与竹蛏之间的遗传距离已达到科之间的水平，结果支持将其提升为刀蛏科的分类观点。3种蛏类线粒体16SrRNA和COI基因在种间明显的多态性，证实了16SrRNA和COI基因序列均普遍适用于蛏类种及以上阶元的系统学分析。 相似文献
4.
DNA barcode assessment of Ceramiales (Rhodophyta) in the intertidal zone of the northwestern Yellow Sea 总被引：1，自引：0，他引：1
A total of 142 specimens of Ceramiales(Rhodophyta) were collected each month from October 2011 to November 2012 in the intertidal zone of the northwestern Yellow Sea. These specimens covered 21 species,14 genera,and four families. Cluster analyses show that the specimens had a high diversity for the three DNA markers,namely,partial large subunit r RNA gene(LSU),universal plastid amplicon(UPA),and partial mitochondrial cytochrome c oxidase subunit I gene(COI). No intraspecific divergence was found in our collection for these markers,except for a 1–3 bp divergence in the COI of Ceramium kondoi,Symphyocladia latiuscula,and Neosiphonia japonica. Because short DNA markers were used,the phylogenetic relationships of higher taxonomic levels were hard to evaluate with poor branch support. More than half species of our collection failed to find their matched sequences owing to shortage information of DNA barcodes for macroalgae in Gen Bank or BOLD(Barcode of Life Data) Systems. Three specimens were presumed as H eterosiphonia crispella by cluster analyses on DNA barcodes assisted by morphological identification,which was the first record in the investigated area,implying that it might be a cryptic or invasive species in the coastal area of northwestern Yellow Sea. In the neighbor-joining trees of all three DNA markers,H eterosiphonia japonica converged with D asya spp. and was distant from the other Heterosiphonia spp.,implying that H. japonica had affinities to the genus Dasya. The LSU and UPA markers amplified and sequenced easier than the COI marker across the Ceramiales species,but the COI had a higher ability to discriminate between species. 相似文献
5.
The present study reports on population structure analysis of the marbled crabPachygrapsus marmoratus (Fabricius, 1787) from the Tunisian coast, an appropriate location to study biogeographical process... 相似文献
6.
Yingchun Lv Rong Zheng Tao Zuo Yuming Wang Zhaojie Li Yong Xue Changhu Xue Qingjuan Tang 《中国海洋大学学报(英文版)》2014,13(5):825-829
Sea cucumbers are traditional marine food and Chinese medicine in Asia. The rapid expansion of sea cucumber market has resulted in various problems, such as commercial fraud and mislabeling. Conventionally, sea cucumber species could be distinguished by their morphological and anatomical characteristics; however, their identification becomes difficult when they are processed. The aim of this study was to develop a new convenient method of identifying and distinguishing sea cucumber species. Polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) analysis of mitochondrial cytochrome oxidase I gene (COI) was used to identifing five sea cucumber species (Apostichopus japonicus, Cucumaria frondosa, Thelenota ananas, Parastichopus californicus and Actinopyga lecanora). A 692 bp fragment of COI was searched for BamHI, KpnI, PstI, XbaI and Eco31I restriction sites with DNAMAN 6.0, which were then used to PCR-RFLP analysis. These five sea cucumber species can be discriminated from mixed sea cucumbers. The developed PCR-RFLP assay will facilitate the identification of sea cucumbers, making their source tracing and quality controlling feasible. 相似文献
7.
CHI Shan QIAN Hao LI Tianyong WANG Xumin LIU Cui REN Lei TANG Xuexi LIU Tao 《海洋学报(英文版)》2014,33(9):139-151
In the past two decades, many studies have focused on the classification within genus Laminaria, ultimately trying to divide it into two subgroups or genera: Laminaria and Saccharina. A significant debate still surrounds the question of its division, as the conflicting phylogenetic hypotheses that have resulted from the classification studies are based on different taxon sampling, molecular markers, or analysis methods. It is aimed at elucidate the molecular phylogeny within Laminaria and Saccharina. The nine species of Laminariales are sampled from northern Asia and Europe, and 23 new sequences in the nuclear, plastid, and mitochondrial genomes are determined to identify their taxonomic status. The phylogenetic analyses of 71 species are performed, including representatives from six of the seven families of the order Laminariales, based on three separate data sets. An evidence is provided to strongly support a clear split that maintains the two recognized genera, Laminaria and Saccharina, with Laminaria appearing to be the ancestor group. Further, analyses indicate that all taxa in Saccharina and Laminaria did not form a monophyletic lineage, instead Laminariaceae and Lessoniaceae grouped together interlacedly, and Costariaceae appeared as the sister taxon of the Lessoniaceae–Laminariaceae clade. In the phylogenetic analysis, mitochondrial c oxidase I(COI) sequences appeared to be the most credible molecular marker which was more befitting than nuclear encoded internal transcribed spacer(ITS) and plastid encoded rbcL for establishment of Laminariales systematics. It is the most comprehensive phylogeny of the order Laminariales, and contributes to an enhanced understanding and estimation of the phylogenetic relationships for the economically important seaweeds, Laminaria and Saccharina. 相似文献
8.
以采自山西晋祠泉的一株淡水红藻JC1712001为实验材料,对其进行分子系统发育分析和形态特征鉴定,同时利用分子数据对其进行生物地理学研究.结果显示,该株淡水红藻JC1712001与美国、西班牙地区报道的马赫拉熊野藻（Kumanoa mahlacensis Kumano）遗传距离最近,基于rbcL、COI和UPA序列的遗传距离均为0.基于3个序列,利用贝叶斯法、最大似然法和邻接法3种方法构建的系统发育树具有高度一致的系统发育关系,JC1712001均与西班牙及美国地区已报道的马赫拉熊野藻聚为一支,支持率都在97%以上,支持其为马赫拉熊野藻,同时也表明3个基因的高度保守性.形态特征的观察也支持这个结果.马赫拉熊野藻在欧洲、亚洲、北美洲均有分布,RASP软件构建的地理起源图谱显示,欧洲类群地理起源更为古老.马赫拉熊野藻为稀有种,本文的研究结果丰富了我国淡水红藻的分布,为其系统发育和地理起源研究提供了依据. 相似文献
9.
Joana M da Silva Antonina dos Santos Marina R Cunha Filipe O Costa Simon Creer Gary R Carvalho 《Marine Ecology》2013,34(2):157-170
Despite the high number of species and ecological diversity of pandalid shrimps, there has been no previous attempt to resolve evolutionary relationships of several genera using molecular tools. Although mitochondrial DNA cytochrome oxidase I (COI) is widely used in barcoding studies to delimit species boundaries, additional insights into phylogenetic affinities can be obtained, especially when used in combination with data from additional genes. The knowledge of molecular diversity is essential to understand phylogenetic relationships and will help systematic clarifications. Based on partial fragments of the 16S and COI genes, we have focused specifically on addressing the systematic relationships of the economically and ecologically important shrimp genus Plesionika within a framework of five genera from within the Pandalidae. Our results showed that species within Plesionika are substantially divergent when compared with other genera, exhibiting the highest average nucleotide divergence, with 0.1123 and 0.0846 in COI and 16S genes, respectively. In addition, sequence divergence was found to vary greatly within the genus Plesionika (COI/16S): 0.0247/0.0016 between Plesionika antigai and Plesionika heterocarpus and 0.1616/0.098 between Plesionika heterocarpus and Plesionika edwardsii. We did not find amino acid sequence divergence between P. heterocarpus and P. antigai compared with P. heterocarpus and P. edwardsii (8.10%, K2P distance). Three species of Plesionika (P. antigai, P. heterocarpus and Plesionika scopifera) appear well separated from other Plesionika species in both maximum likelihood and Bayesian analyses. The present study confirms the utility of COI over 16S as a genetic marker to resolve relationships between different species of Plesionika from the Northeast Atlantic and Mediterranean Sea, in addition to species delimitation. The findings highlight the need to further review paraphyly within Plesionika in an attempt to recognize a concordance in the evolutionary history of Plesionika with major ecological and geological events. 相似文献
10.
本研究针对中国沿海银口天竺鲷属鱼类分类鉴定不清晰,同种异名多,种类误鉴等分类问题,结合形态特征比较与DNA条形码技术对其分类鉴定问题进行梳理。2014—2019年间于南海北部沿海采集101尾银口天竺鲷属鱼类标本,经形态学特征鉴定为：横带银口天竺鲷Jaydia striata（Smith&Radcliffe,1912）,特征为体侧有7—11褐色宽横带,腹鳍、臀鳍浅灰色;印度洋银口天竺鲷J.striatodes（Gon,1997）,特征为体侧有7—11褐色宽横带,臀鳍后缘黑色;白边银口天竺鲷J.novaeguineae（Valenciennes,1832）,特征为臀鳍、尾鳍最下缘为白边;黑边银口天竺鲷J.truncata（Bleeker,1855）特征为第二背鳍、臀鳍中部有一平行基底的黑色带,尾鳍后缘黑色带略宽;史密斯银口天竺鲷J.smithi Kotthaus,1970,特征为第二背鳍中部有一平行基底的黑色纵带,尾鳍后缘黑色带略细;斑鳍银口天竺鲷J.carinatus （Cuvier,1828）,特征为第二背鳍最末软条基底有一大黑斑;黑鳃银口天竺鲷J.poeciloptera （Cuvier,1828）,特征为臀鳍淡黄色,鳍膜间有一暗点。研究发现Apogon arafurae并不是J.truncata同种异名,学名应更正为Jaydia poeciloptera。基于线粒体COI基因K2P遗传距离显示,J.striata、J.smithi、J.truncata种内遗传距离大于2%。构建NJ系统发育树发现红海、阿拉伯海和北部湾的J.smithi分成2个单系支。结合NJ树分析发现,J.smithi和J.poeciloptera均出现错误鉴定,认为GenBank上传的序列（MH085808、JQ681491）存在误鉴,实为J.poeciloptera。 相似文献