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1.
Elucidating the scale of gene flow among populations is an important challenge for understanding the ecological dynamics and local adaptation of marine organisms. We assessed whether gene flow is restricted even at a small spatial scale in the Japanese common intertidal goby Chaenogobius annularis, using highly polymorphic DNA markers, involving the mitochondrial DNA (mtDNA) control region and 15 microsatellite DNA (msDNA), because past ecological studies have suggested low dispersal ability for rocky intertidal fishes. We found significant heterogeneities between four neighboring local populations by both mtDNA and msDNA analyses. In addition, no genetic heterogeneity was detected by either method across generations within a population; it was considered that such genetic differentiation is retained across generations and that the gene flow of this species is restricted to within a radius of a few kilometers. This is the first report showing a clear genetic subdivision in rocky intertidal fish. 相似文献
2.
Valter Amaral Henrique N. Cabral Stuart Jenkins Stephen Hawkins José Paula 《Estuarine, Coastal and Shelf Science》2009
Estuarine and nearshore marine areas are vital habitats for several fish and benthic invertebrates. The shore crab Carcinus maenas (Crustacea: Brachyura: Portunidae) inhabits a variety of coastal, estuarine and lagoon habitats. At low tide, habitat structural complexity may be most important for crabs in the intertidal, providing refuge from predation and desiccation. The quality of different vegetated and nonvegetated estuarine and rocky shore habitats in SW Portugal and SW England was evaluated for intertidal C. maenas populations. We estimated population density, size–structure, and potential growth (RNA/DNA ratios) to investigate habitat quality. Vegetated estuarine habitats supported higher crab densities, than nonvegetated estuarine and rocky shore habitats. Investigation of population size–structure revealed that all habitats seem important recruitment and nursery areas although estuarine habitats in SW Portugal appeared to support higher densities of new recruits than equivalent habitats in SW England. Significant variation was found in RNA/DNA ratios among habitats. Ratios were highest in the rocky shore suggesting a high quality habitat where growth potential is high. We speculate that competition from other top-predators (Pachygrapsus spp.) rather than low habitat quality may limit the occurrence of C. maenas in intertidal rocky shore habitats in SW Portugal. In estuarine environments RNA/DNA ratios were significantly higher in the vegetated than in the nonvegetated estuarine habitats in SW Portugal but not in SW England, suggesting geographic differences in the extent to which highly structure habitats represent high quality. Our results challenge the current paradigm that structured habitats are necessarily those of higher quality for C. maenas. 相似文献
3.
Ann Bucklin Thomas D. Kocher 《Deep Sea Research Part II: Topical Studies in Oceanography》1996,43(7-8)
Molecular population genetic analysis has provided evidence that the copepod, Calanus finmarchicus, of the Labrador Current, Gulf of St Lawrence, Scotian Shelf, Gulf of Maine, and Georges Bank constitute a single, interbreeding population. The DNA sequence of a 350 base pair portion of the mitochondrial large subunit (16S) ribosomal RNA (rRNA) gene was determined for a total of 72 individuals collected in 1992, and 110 individuals collected in 1993 from these regions. There was significant heterogeneity in haplotype frequencies among the samples collected in 1992, but this heterogeneity did not resolve into regional patterns. The only regional differences seen were between pooled samples of the western N. Atlantic and those of the Norwegian Sea. There were no significant differences in haplotype frequencies among the samples collected in 1993, and fewer haplotypes were observed in these samples. Intraspecific molecular variation was typical of other marine species: there were 29 haplotypes among the 182 individuals sequenced. The frequency distribution of the haplotypes was highly skewed: 128 individuals shared one haplotype and 19 individuals were unique. There were 24 variable sites among the 350 bases sequenced; estimated nucleotide diversity was 0.0042. The genetic character of C. finmarchicus populations in the western N. Atlantic was stable over time in that three of the haplotypes (including the most abundant) occurred in both 1992 and 1993. However, haplotype frequencies differed significantly between the two years. The lack of regional structure in the 1992 samples and the genetic homogeneity of samples collected in 1993 across the domain from the Labrador Current to the Gulf of St Lawrence to Georges Bank and the Gulf of Maine indicated that there is significant gene flow across this region. The persistent genetic pattern suggests that the Gulf of St Lawrence may be an important source region for recruitment of C. finmarchicus to Georges Bank. Determination of zooplankton dispersal patterns within high gene flow species will provide information that may not be determined by conventional oceanographic analyses. 相似文献
4.
The first use of Fulton's K for assessing and comparing the conditions of inter‐tidal fish populations 
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下载免费PDF全文 Fulton's K condition factor was applied, for the first time, to inter‐tidal specimens of the shanny (Lipophrys pholis) and long‐spined scorpion fish (Taurulus bubalis) from two English rocky shore and two Welsh rocky shore sites during summer 2010 and winter 2011. As both species contribute to the diet of commercial species such as cod (Gadus morhua) and near‐threatened species such as the European otter (Lutra lutra), their condition may affect that of these predators. Fulton's K found that inter‐tidal Welsh fish maintained a ‘good’ condition between seasons, whereas the inter‐tidal English fish were in a poorer condition during winter. Although condition also changed amongst the sites on each coast, further studies are needed into fish morphologies, environmental parameters, prey availabilities and abundances, and fish specimen sex and maturities. 相似文献
5.
Y Qhaji B Jansen van Vuuren I Papadopoulos CD McQuaid 《African Journal of Marine Science》2015,37(3):345-351
The Wild Coast in south-eastern South Africa is strongly influenced by the warm, southward-flowing Agulhas Current. This current has a significant impact on dispersal in the coastal biota of the region, and facilitates high levels of connectivity among populations. However, it is not known how the region's high-velocity hydrology affects genetic population structure in endemic estuarine species, populations of which are frequently isolated from the sea. Here, we compared genetic structure in two estuarine crabs of the family Hymenosomatidae. Both are presumed to have low dispersal potential, but they differ in terms of their life histories. Hymenosoma longicrure has abbreviated larval development and can complete its entire life cycle within estuaries, whereas Neorhynchoplax bovis is a direct developer that lacks planktonic larvae. Using DNA sequence data from the mitochondrial COI gene and the intron of the nuclear ANT gene, we found that levels of genetic structure differ considerably between the species. Depending on the genetic marker used, H. longicrure is genetically homogeneous (COI) or displays low levels of genetic structure and minor evidence of recruitment near natal sites (ANT). In contrast, connectivity in N. bovis is much lower, as this species has a unique combination of alleles at each site, indicating that recruitment is mostly local. These results support previous findings suggesting that even a short larval dispersal phase is sufficient to maintain high levels of connectivity and prevent genetic divergence among populations. 相似文献
6.
Larval dispersal is critical for the maintenance of species populations in patchy and ephemeral hydrothermal vent habitats. On fast‐spreading ridges, such as the East Pacific Rise, rates of habitat turnover are comparable to estimated lifespans of many of the inhabiting species. Traditionally, dispersal questions have been addressed with two very different approaches, larval studies and population genetics. Population genetic studies of vent‐endemic species have been informative for determining whether patterns of dispersal are suggestive of stepping stone or island models and estimating rates of gene flow (effective migrants per generation) over broad geographic ranges. However, these studies leave fundamental questions unanswered about the specific mechanisms by which larvae disperse and species maintain their populations and biogeographic ranges. With the goal of examining genetic structure and elucidating alternative larval dispersal mechanisms, we employed a genomic DNA fingerprinting technique, amplified fragment length polymorphisms (AFLPs). To assess the potential utility of AFLPs, and genetic structure of the hydrothermal vent tubeworm Riftia pachyptila, genomic ‘fingerprints’ were recovered from 29 individuals from five vent fields spanning a distance of up to c. 5000 km along the East Pacific Rise. In contrast to previous population genetic studies that found little to no genetic structure using allozymes and mitochondrial DNA, genetic analyses of 630 polymorphic AFLP loci identified distinct subclades within R. pachyptila populations. Significant levels of differentiation were observed among populations from all vent regions as well as within each region. Discrete assemblages of tubeworms separated by as little as c. 400 m within a given vent region were genetically distinguishable and cohorts (based on size‐frequency distribution) within an aggregation were found to be most closely related. These results suggest that mechanisms of larval dispersal act to retain cohort fidelity in R. pachyptila. 相似文献
7.
High connectivity and directional gene flow in European Atlantic and Mediterranean populations of Ciona intestinalis sp. A 下载免费PDF全文
下载免费PDF全文 Ornella Affinito Nikos Andreakis Luigi Caputi Rita Marino Raimondo Pannone Paolo Sordino Gabriele Procaccini 《Marine Ecology》2015,36(4):1230-1243
Understanding the factors that cause population divergence has long been of interest to marine biologists in their attempts to interpret the effect of human‐mediated vectors. Broadcast‐spawning species with limited dispersal capability are excellent candidates to measure the present‐day patterns of genetic diversity. The tunicate Ciona intestinalis (Ascidiacea) is comprised of a complex of morphologically cryptic species that form vigorous aggregates in eutrophic habitats (harbors, gulfs and lagoons) where they can compete with the epibenthic community and cause biofouling problems. This study investigated biogeographic variability and migration patterns of C. intestinalis sp. A along Northeast Atlantic and Mediterranean coasts using microsatellite markers. Data presented here on 371 specimens collected from 17 populations reveal high genetic polymorphism, but with a deficit of heterozygote deficiency. Absence of evidence for isolation by distance suggests that the genetic patterns do not reflect the geographic distribution of sampled populations. Substantial gene flow and artificial potential for dispersal boost high levels of within‐population genetic variability and prevent genetic differentiation within and between seas. A predominant eastward migration pattern was revealed by the data set, with very limited opportunity for C. intestinalis sp. A to travel westward. This directional movement indicates that other properties (e.g. habitat quality, genetic traits, mating system, life cycle) may cause adaptive divergence at a large biogeographic scale. 相似文献
8.
Effects of a nuclear power plant thermal discharge on habitat complexity and fish community structure in Ilha Grande Bay, Brazil 总被引：1，自引：0，他引：1
Tatiana Pires Teixeira Leonardo Mitrano Neves Francisco Gerson Araújo 《Marine environmental research》2009,68(4):188-195
Fish communities and habitat structures were evaluated by underwater visual censuses a rocky location impacted by thermal discharge (I) and at two control locations, one in a Sargassum bed (C1) and the other in a rocky shore with higher structural complexity (C2). Habitat indicators and fish communities exhibited significant differences between the impacted and control locations, with the impacted one showing a significant decrease in fish species richness and diversity, as well as a decrease in benthic cover. At the I location, only 13 fish species were described, and the average water temperature was 32 ± 0.4 °C, compared with 44 species at C1 (25.9 ± 0.3 °C) and 33 species at C2 (24.6 ± 0.2 °C). Significant differences in fish communities among locations were found by ANOSIM with Eucinostomus argenteus, Mugil sp. and Haemulon steindachneri typical of location I, while Abudefduf saxatilis, Stegastes fuscus and Malacoctenus delalandi were typical of the control locations. Our study shows that thermal pollution alters benthic cover and influences fish assemblages by altering composition and decreasing richness. 相似文献
9.
Alison Bimler 《新西兰海洋与淡水研究杂志》2013,47(4):715-720
The mud whelk Cominella glandiformis (Reeve, 1874) was observed on a tidal flat “floating” upside down beneath the water surface. Study in the laboratory showed that, when C. glandiformis is “floating”, the foot is distended with blood to approximately twice its normal surface area. In the laboratory C. glandiformis “floated” only during daylight hours, and the incidence of “floating” increased markedly as specimens became more overcrowded. Possibly “floating” is a rapid dispersal mechanism in response to overcrowding; it may also assist respiration in the event of overcrowding producing anaerobic conditions. Its occurrence only during daylight hours suggests that a reaction to light may also be involved. 相似文献
10.
Anthropogenic factors and habitat complexity influence biodiversity but wave exposure drives species turnover of a subtropical rocky inter‐tidal metacommunity 下载免费PDF全文
下载免费PDF全文 Coastal ecosystems are complex and species rich, but are vulnerable to degradation from a variety of anthropogenic activities. Nevertheless, information on inter‐tidal community composition in the Caribbean Basin and at other oceanic sites is lacking. Such information is essential to developing a more comprehensive understanding of rocky inter‐tidal systems and their responses to global change. The goals of this study were to determine the relative importance of environmental (wave power density, wave height), habitat (e.g. algal cover, slope, complexity of rock surfaces) and anthropogenic (distance to roads, population density) factors associated with the structure of local assemblages at multiple shore heights and the regional metacommunity of mobile invertebrates on oceanic rocky inter‐tidal habitats. Environmental characteristics associated with habitat complexity (algal cover, rock surface complexity) and human population density were most strongly associated with abundance and biodiversity of invertebrates. Species richness was positively correlated with surface complexity, but abundance was negatively correlated with both surface complexity and per cent algal cover. By contrast, abundance of invertebrates was positively correlated with human population density, and diversity was negatively correlated with human population density. Abundance of invertebrates was greatest in the mid inter‐tidal zone, whereas diversity was greatest in the lower inter‐tidal zone. Metacommunity structure was Gleasonian, but the gradient along which species turnover occurred was correlated with measures of wave exposure, rather than anthropogenic activity. Unlike in previous studies, mostly at mainland sites, human activity primarily altered dominance patterns of communities, while having relatively little effect on species richness or composition. 相似文献
11.
The study investigated the global and regional phylogeography of the yellowtail kingfish Seriola lalandi by examining genetic diversity and population genetic structure of this species at inter-and intra-ocean level and on a regional scale. DNA fragments of two mitochondrial genes, cytochrome b (Cytb) and cytochrome c oxidase subunit I (COI) and one nuclear gene, recombination activating gene 1 (RAG1), were sequenced to investigate the global-scale phylogeography of this species. The population genetic structure within the South Pacific, as well as along the South African coastline, was examined further using six microsatellite markers. Three distinct clades were identified for S. lalandi, which correspond with previously described subspecies of the North-East Pacific, North-West Pacific and the Southern Hemisphere. Within the latter, additional divergence was observed between the South Pacific and the South-East Atlantic regions. Divergence estimates were indicative of a Pacific origin for S. lalandi populations, because of Pleistocene vicariant events. Microsatellite analyses revealed overall significant genetic differentiation between South African and South Pacific samples. This corroborates recent findings on the global phylogeography of the species. No population differentiation was observed within South Africa, indicating high levels of gene flow. 相似文献
12.
The genetic diversity and differentiation of four Zostera marina populations along the southern coast of Korea were estimated using random amplified polymorphic DNA (RAPD) markers to determine the effects of natural and anthropogenic stresses and reproductive strategy on within‐population genetic diversity. The mean number of alleles and gene diversities, indicating population genetic diversity, was highest in the Z. marina population that was exposed to repeated environmental disturbances, and lowest in the most undisturbed population. The higher genetic diversity in the disturbed population was associated with a higher contribution of sexual reproduction to population persistence. This suggests that both the level of disturbances and the reproductive strategy for population persistence contributed significantly to population genetic diversity at the study sites. According to the analysis of molecular variance (AMOVA), 76% genetic variation was attributable to differences among individuals within populations. The observed genetic differentiation (FST = 0.241) among Z. marina populations at the study sites appeared to result from reduced meadow size, increased genetic drift, and a high incidence of asexual reproduction. Increased population genetic diversity can enhance resistance and resilience to environmental disturbances; thus, this investigation of seagrass population genetics provides valuable new insights for the conservation, management, and restoration of seagrass habitats. 相似文献
13.
The penaeid prawns Fenneropenaeus indicus and Metapenaeus monoceros support shallow-water prawn fisheries in the south-west Indian Ocean. They are sympatric and have similar life histories, including developmental stages that depend on estuarine and marine habitats and a short dispersal duration. Nevertheless, M. monoceros juveniles display a more generalist habitat preference in estuaries and recruit to offshore habitats during a different season than F. indicus. We hypothesised that these differences would affect dispersal patterns, leading to dissimilar geographic genetic structure between the two taxa. Given their short dispersal phase, we also hypothesised that the Mozambique Channel would form a barrier to dispersal between the southeastern African mainland and Madagascar sites. Population differentiation was assessed based on analysis of mitochondrial DNA control-region sequences. Both species displayed high haplotype and low nucleotide diversity. Pairwise ?ST statistics supported the existence of admixed populations along the African mainland sites for both species, with geographic distance isolating populations at the extremes of the sampled range (Kenya and east coast of South Africa). The Madagascar population differed significantly from African mainland populations. The concordant patterns in population differentiation suggest that F. indicus and M. monoceros can be considered as single African stocks, or fisheries management units. 相似文献
14.
Laurel A. Zahn Jeremy T. Claisse Jonathan P. Williams Chelsea M. Williams Daniel J. Pondella II 《Marine Ecology》2016,37(4):770-785
Understanding species distributions and their community structure is increasingly important when taking an ecosystem‐based approach to conservation and management. However, knowledge of the distribution and community structure of species in mid‐range trophic levels (e.g. macroinvertebrates) is lacking in most marine ecosystems. Our study aimed to examine the spatial distribution and community‐level biogeographic patterns of common kelp forest–rocky reef macroinvertebrates in Southern California and to evaluate the effects of environmental gradients on these communities. Quantitative SCUBA surveys were used to estimate macroinvertebrate densities at 92 sites from 2008–2012. Non‐metric multidimensional scaling was used to evaluate spatial patterns of macroinvertebrate communities among Regions. We found that kelp forest–rocky reef macroinvertebrate communities are distinct among different island and mainland regions, and their community patterns exhibited a strong relationship with an environmental gradient (i.e. sea surface temperature) even after controlling for geographic distance between sites. High abundances of urchin species (Strongylocentrotus purpuratus and Strongylocentrotus franciscanus) were strong drivers of regional differences. Macroinvertebrate community patterns were driven by characteristic species that were typically more prevalent at warmer or colder sites. Our results provide the first quantitative analysis of macroinvertebrate community structure within the California kelp forest ecosystem. We also describe the distribution and abundance of 92 conspicuous kelp forest‐rocky reef macroinvertebrates among nine pre‐defined Regions. This study provides important preliminary information on these macroinvertebrate species that will be directly useful to inform management of invertebrate fisheries and spatial protection of marine resources. 相似文献
15.
16.
2019~2020年在三峡库区巫山(WS)、万州(WZ)、丰都(FD)、涪陵(FL)4个采样点采集到新建短颌鲚(Coilia brachygnathus)种群153尾个体,基于鳞片和10个微卫星DNA标记进行年龄结构、生长特征与遗传多样性分析。结果显示,短颌鲚种群体长分布范围为102.1~301.6mm,平均体长(196.6±40.0)mm;体重分布范围为1.90~79.70g,平均体重(17.70±13.06)g。短颌鲚种群年龄组为1~5龄,其中2龄和3龄为优势年龄组,占总个体数的82.35%。体长-体重呈幂函数指数关系,属于正异速生长类型。微卫星DNA标记分析结果显示,10个微卫星位点共检测到82个等位基因,各群体平均等位基因数(Na)为5.600 0~7.300 0,平均有效等位基因数(Ne)为3.541 4~3.831 5,平均观测杂合度(Ho)为0.617 7~0.700 0,平均期望杂合度(He)为0.682 3~0.702 9之间,平均多态信息含量(PIC)为0.628 5~0.648 4。4个群体的遗传多样性水平均较高,呈现出由三峡库区下游至上游逐渐减小的特点。遗传结构分析结果显示,群体间遗传分化水平很低,遗传变异主要来源于个体内部。结果表明,三峡库区短颌鲚种群处于快速扩张阶段,4个群体均具有较丰富的遗传多样性,遗传结构未发生显著群体分化,群体间基因交流频繁。由此提示,三峡库区短颌鲚很可能来源于三峡大坝下种群扩张迁入三峡库区水域而繁殖建群。 相似文献
17.
Peter L. Horn 《新西兰海洋与淡水研究杂志》2013,47(3-4):253-261
Various morphological and physiological features of Sypharochiton pelliserpentis (Quoy & Gaimard, 1835) were examined in relation to the different physico‐chemical characteristics experienced at 4 sites on Kaikoura Peninsula and 2 sites in the Avon‐Heathcote Estuary. Body water content of chitons from high‐shore exposed and estuarine rocky sites was significantly greater (P<0.005) and desiccation rates were significantly less (P<0.05) than those of chitons from low‐shore marine sites and an estuarine mudflat. The percentage of body water loss causing death was greatest for high‐shore marine chitons and least for estuarine chitons. Estuarine chitons had relatively more gill tissue than marine individuals. Body shape appeared to be correlated with intensity of wave action, and narrow animals were found in more wave‐exposed areas. Variations in radula length showed no clear‐cut trends among localities. 相似文献
18.
带鱼(Trichiurusjaponicus)是广泛分布于东亚大陆架海域的暖温性近底层经济鱼类,也是东海区最重要的海洋渔业捕捞对象。然而,目前的研究报道对东海近岸带鱼群体遗传变异特性认识不足,不利于其种群的遗传资源保护和管理。本研究利用线粒体控制区序列对东海近岸带鱼6个群体191个个体的遗传多样性、遗传分化和历史动态进行分析。在577 bp长的控制区序列中共检测到70个多态位点,定义了121个单倍型。群体总的单倍型多样性较高(0.9911),但总的核苷酸多样性较低(0.0092),群体间遗传多样性水平差异较小。单倍型遗传学关系、Fst值和分子方差分析结果均表明群体间的遗传分化不显著,存在广泛的基因交流。历史动态分析结果表明东海近岸带鱼群体在更新世中晚期可能经历了瓶颈效应和随后的群体快速扩张,这是导致群体遗传多样性较低的主要原因。带鱼较强的扩散能力、洄游行为、海洋环流以及近期的群体扩张可能是造成东海近岸带鱼缺乏显著的系统地理种群结构的原因。研究结果提示,在线粒体DNA水平上,东海近岸带鱼群体是一个随机交配的种群,在遗传资源管理上可作为一个单元进行管理。 相似文献
19.
Pleistocene climatic and oceanographic changes have influenced the distribution of marine biodiversity in southern Africa. Most evidence, however, has been derived from rocky shore or demersal taxa; data on sandy shore species are limited, despite severe threats to many sandy beach ecosystems. To test the effects of past climatic changes on sandy shore species, we sampled 140 smooth plough shell Bullia rhodostoma individuals from eight localities and generated phylogeographic data derived from the mtDNA cytochrome c oxidase subunit 1 (COI) marker. Nuclear markers (ATPSα, ATPSβ, ANT, SRPS4, TBP, LTRS and ZMP) showed no sequence variation. Bullia rhodostoma exhibited shallow genetic differentiation (ΦST = 0.07, p < 0.05) across its range. Isolation-by-distance suggests a stepping-stone model of migration, which is expected given the species’ direct-development life-history strategy. Demographic reconstruction suggests a post-LGM (Last Glacial Maximum) range expansion, concordant with the signal of shallow genetic differentiation. Phylogeographic patterns obtained suggest that, during lower sea levels than current, B. rhodostoma could have been restricted to the South-West Coast, the central Agulhas Bioregion and probably also the East Coast. When climatic conditions changed and temperatures began to rise after the LGM, the species began a rapid westward range expansion from these refugial regions. 相似文献
20.
Abstract. This paper deals with the population dynamics of the introduced barnacle Balanus glandula in a port shelter and a rocky shore exposed of a southwestern Atlantic area. Replicated areas in both zones were denuded monthly and censused in both the high intertidal and the upper mid intertidal zone. The settlement pattern. recruitment, mortality and growth of B. glandula and a comparative successional pattern in both areas were recorded. Recruitment began in winter, i.e., July in the port and August in the rocky shore. In the port, green algae dominate up to a final community of Balanus glandula all along the intertidal, while in rocky shores the red encrusting alga Hildenbrandia lecanellieri establishes a cover that is replaced by the mytilid Brachidontes rodriguezi in the mid intertidal and by B. glandula in the high intertidal and upper mid intertidal. B. glandula densities were greater in the upper mid intertidal 19 600 and 5050 indiv. · m-2 in the port and rocky shore, respectively than in the high intertidal 13600 and 1100 indiv.· m-2, respectively. Mortality was greater in the port up to 62%, but heavy settlement allows a final density 4 times greater than in eulittoral rocky shores and 10 times greater than in the high intertidal. The winter reproduction of Balanus glandula, the absence of predators, the neutral or beneficial effect of algae. with spatial and temporal partitioning of substrate allows it to successfully outcompete mussels and other barnacle species from the intertidal community of both sheltered and exposed areas. 相似文献