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1.
荣成月湖是一个典型天然潟湖,潮间带沉积物中存在多种形态趋磁细菌。通过Roche454高通量测序平台,对沉积物样品(B_S)和磁收样品(B_M)进行16SrRNA基因高通量测序,认识荣成潮间带沉积物的细菌群落结构,并了解趋磁细菌多样性及系统进化地位。研究结果表明沉积物样品中主要的细菌类群为δ-变形菌纲,占总细菌数的26.4%,其次是γ-变形菌纲和α-变形菌纲;而磁收样品中细菌多样性和种类明显降低,以α-变形菌纲占绝对优势,相对比例达72.6%。在磁收样品和沉积物样品分别发现了1 612条和186条reads与趋磁细菌相关,分别占细菌总数的5.76%和0.85%,磁收样品中趋磁细菌数是沉积物样品的6.8倍。对两个样品中获得的趋磁细菌序列进行系统进化分析,发现这些序列多数属于变形菌门的α-变形菌纲,以趋磁球菌占绝对优势,少数属于δ-变形菌纲,与多细胞趋磁原核生物亲缘关系最近。海洋趋磁螺菌属仅在B_M样品中检出,趋磁弧菌属在B_M样品优势度高于B_S样品,而多细胞趋磁原核生物和趋磁螺菌属在B_S样品中优势度更高。通过分析样品间的差异OTUs,认为荣成潮间带沉积物中可能存在大量未知的趋磁细菌新类群。研究结果为下一步培养和开发趋磁细菌这一功能菌群,发现趋磁细菌新类群及趋磁细菌生态功能提供了基础资料。 相似文献
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针对长江口10个站位样品,采用HM培养基和ZMCA培养基分离培养耐(嗜)盐菌,通过PCR方法获取156株细菌的16S rDNA序列。其中,由HM培养基分离获得136株菌株,可划分为33个分类单元(OUT),分属α-变形菌纲(Alphaproteobacteria)、γ-变形菌纲(Gammaproteobacteria)和厚壁菌门(Firmicutes)的芽孢杆菌纲(Bacilli)3个类群,其中γ-变形菌纲为优势耐(嗜)盐细菌;靠近海岸的站点M5-1,N6-2和M4-1耐(嗜)盐细菌均属于厚壁菌门,而远离海岸的站点耐(嗜)盐细菌均属于变形菌门。以ZMCA培养基分离获得的20株菌株分属α-变形菌纲和放线菌纲(Actinobacteria),可划分为10个OTU。由HM培养基分离获得的菌株中,70.5%属于耐盐菌,29.5%属于中度嗜盐菌;由ZMCA培养基分离获得的菌株均为耐盐菌。HM培养基分离得到的136株细菌的硝酸盐和亚硝酸盐还原性分析表明,亚硝酸盐还原菌数量仅为硝酸盐还原菌的1/3左右。 相似文献
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杭州西溪湿地沉积物细菌的群落结构和多样性 总被引：1，自引：0，他引：1
采用Illumina Mi Seq高通量测序技术,对杭州西溪湿地4种不同植被下沉积物的细菌多样性进行了研究。通过提取样品基因组DNA,对16S r RNA V3、V4区测序,共获得有效序列67734条,产生2181个OTU,序列平均长度为441 bp,其中大于400bp的序列占99.74%。对97%相似水平的OTU代表序列进行分类学分析,结果表明,沉积物具有很高的细菌多样性,涵盖了30个门252个属的细菌。其中变形菌门(Proteobacteria)是各样品的优势类群,所占比例高达30.0%—64.7%。同时,β-变形菌纲、γ-变形菌纲和δ-变形菌纲在变形菌门中占主导地位,在这些类群中发现有大量与N、S等元素代谢相关的菌群,应该在湿地沉积物的元素循环中发挥着重要作用。此外,4个样品中约有10%—15%的序列属于无法确定分类位置(Unclassified)的类群,说明西溪湿地沉积物中蕴藏有较多的潜在新物种。本研究结果将为西溪湿地的保护和修复提供理论和实践依据。 相似文献
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Magnetospira sp.QH-2是一株分离自黄海潮间带的海洋趋磁螺菌,该菌磁小体排列不整齐,并且磁小体链内某些区域排列疏松,推测与其磁小体岛上的mam K编码的Mam K蛋白相关。mam K开放阅读框大小为1086 bp,编码361个氨基酸,Mam K蛋白属于NBD_sugar-kinase_HSP70_actin超家族,为非跨膜蛋白;此外,还利用生物信息学工具预测Mam K蛋白二级和三级结构。系统进化分析显示Mam K蛋白的系统进化和16S r RNA基因的系统进化有一定差异,推测磁小体岛的获得可能与菌种的进化是独立的两个过程;淡水与海水中的趋磁螺菌虽然形态相似,但系统进化地位有一定差异,可能是两者不同生境下适应性演化的结果。 相似文献
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趋磁细菌能够形成纳米级的磁小体,磁小体排列成链作为生物磁针使细菌沿氧化还原梯度在地磁线上移动。磁小体独特的晶体和磁性特征使其在生物技术、医药和地质生物学应用等领域有巨大的潜力,磁小体的细胞生物学特征也使其成为原核生物细胞器研究的理想模型。本文介绍了近年来在趋磁细菌基因组和磁小体链形成机制方面的研究进展。 相似文献
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采用正交试验的方法优化磁小体培养条件,结果使趋磁细菌OD600达到0.440(生物量为1.166×109cells/ml),同时运用磁收集传代法,使趋磁细菌Cmag值稳定在1.9—2.0。培养时用透射电镜观察磁小体形成过程,结果发现培养24h细菌体内已有较小晶体形成且沿长轴分布;48h晶体长大且形成分段链沿长轴排列;72h晶体进一步成熟仍以分段链沿长轴排列;随后细菌逐渐衰亡磁小体变小,168h可见部分自溶细菌中仍有磁小体链;192h细菌自溶磁小体链分散到环境中。还观察到磁小体在细菌分裂时采用两种分离方式,一种为磁小体分配到两个子细胞;另一种为磁小体只分配到一个子细胞。无磁小体的子细胞,一部分逐渐产生磁小体,另一部分不产生磁小体。 相似文献
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从南海北部巴士海峡深海沉积物中提取到高质量的总DNA, 通过TA克隆构建了含有23个可操作分类单元(OTU)的16S rRNA基因文库, 选择各OTU中代表性克隆子进行测序与系统发育分析, 结果表明, 南海北部巴士海峡深海沉积物中细菌在系统进化树中至少分属于9个类群: 其中放线菌Actinobacteria, 变形细菌Proteobacteria, 和浮霉菌Planctomycetes为优势种;其他细菌如疣微菌Verrucomicrobia, 鞘脂杆菌Sphingobacteria, 硝化螺旋菌门(Nitrospira), 绿弯菌Chloroflexi, 厚壁菌Firmicute, 酸杆菌Acidobacteria等为非优势种群;另外有两个克隆子属于未知种群.在所获得的23个代表克隆子序列中,有11个序列与已知细菌的同源性≤95%, 占到了所有序列的48%, 这一结果说明在南海北部巴士海峡海区具有非常丰富的微生物多样性, 这一海区蕴含着大量未知的微生物资源, 因而值得进行进一步的研究探索. 相似文献
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通过荧光染色、稀释培养、生理生化和16SrRNA基因鉴定等方法,研究了北极黄河站附近海域海水中浮游细菌的丰度、可培养浮游细菌形态学特征及多样性;采用高通量测序技术研究了黄河站附近采样站点(BJ2)的不可培养浮游细菌群落结构。可培养研究结果表明:(1)9个站点(BJ1-BJ9)水样平均含菌数为2.88×108个/L;(2)21株可培养浮游细菌中,仅AB08、AB09和AB17三株细菌为革兰氏阳性菌;(3)细菌主要包括放线菌纲(Actinobacteria),黄杆菌纲(Flavobacteriia)和γ-变形菌纲(Gammaproteobacteria),其中假单胞菌属(Pseudomonas)为优势菌(占71%)。高通量测序结果显示:在得到的1 467个不可培养浮游细菌OTU中,变形菌门(Proteobacteria)和拟杆菌门(Bacteroidetes)为优势菌群,所占比例分别为49.71%和41.61%,还有少量的浮霉菌门(Planctomycetes)和疣微菌门(Verrucomicrobia);其中变形菌门中以α-变形菌纲(α-Proteobacteria)为主要类群。 相似文献
9.
青岛潮间带沉积物可培养厌氧细菌多样性的研究 总被引：1，自引：1，他引：0
为了验证设计的简易厌氧培养方法,作者以青岛潮间带沉积物为研究对象,采用5种培养基,从青岛潮间带沉积物共分离获得138株厌氧细菌。16S r DNA序列分析表明,这些细菌分属3个门15个属32个种,其中γ-变形菌纲64株18个种,在种类上处于优势地位;此外还包括δ-变形菌纲(δ-Proteobacteria)16株2个种,ε-变形菌纲4株1个种,拟杆菌门(Bacteroidetes)29株8个种,梭杆菌门(Fusobacteria)25株3个种。在属水平上,弧菌属(Vibrio)、Marinifilum属、泥杆菌属(Ilyobacter)、脱硫弧菌属(Desulfovibrio)、希瓦氏菌属(Shewanella)在数量上占优势。此外,有26株8种细菌(占总菌株数的18.84%)与已知菌的同源性介于89.38%~94.22%,为潜在的海洋细菌新科或新属,表明此简易厌氧菌培养方法在获得新菌方面具有较大优势。另外,研究结果还表明,不同培养基对特定的类群具有选择性:2216E培养基对γ-变形菌纲分离培养效率较高;SPG培养基在获得新菌方面具有优势(占新菌数62.5%),且这些新菌大多属于拟杆菌门和梭杆菌门,其中SPG-1培养基对于分离硫酸盐还原菌和难培养的ε-变形菌纲细菌具有优势,SPG-4培养基对分离硝酸盐还原菌具有优势。 相似文献
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Tautog, Tautoga onitis, is an abundant species of fish in estuaries of the northeastern United States. Planktonic tautog larvae are abundant in summer in these estuaries, but there is little information on rates of growth of tautog larvae feeding on natural assemblages of food in the plankton. We examined abundance and growth of larval tautog and environmental factors during weekly sampling at three sites along a nearshore‐to‐offshore transect in Buzzards Bay, Massachusetts, USA during summer 1994. This is the first study of a robust sample size (336 larvae) to estimate growth rates of field‐caught planktonic tautog larvae feeding on natural diets, using the otolith daily‐growth‐increment method. The study was over the entire summer period when tautog larvae were in the plankton. The sampling sites contrasted in several environmental variables including temperature, dissolved oxygen (DO), and chlorophyll a concentration. There was a temporal progression in the abundance of tautog larvae over the summer, in relation to location and temperature. Tautog larvae were first present nearshore, with a pronounced peak in abundance occurring at the nearshore sites during the last 2 weeks in June. Larvae were absent at this time further offshore. From late June through August, larval abundance progressively decreased nearshore, but increased offshore although never approaching the abundance levels observed at the nearshore sites. The distribution and abundance of tautog larvae appeared to be related to a nearshore‐to‐offshore seasonal warming trend and a nearshore decrease in DO. Otoliths from 336 larvae ranging from 2.3 to 7.7 mm standard length had otolith increment counts ranging from 0 to 19 increments. Growth of larval tautog was estimated at 0.23 mm·day?1, and length of larvae prior to first increment formation was estimated at 2.8 mm indicating that first increment formation occurs 3–4 days after hatching at 2.2 mm. Despite spatial and temporal differences in environmental factors, there were no significant differences in growth rates at any of three given sites over time, or between sites. Because larval presence only occurred at a narrow range of temperature (17–23.5 °C) and DO (6.5–9.3 mg·l?1), in situ differences in growth did not appear to be because of differences in larval distribution and abundance patterns relative to these parameters. 相似文献
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Soil-sized particulates have been collected on board ship by a mesh technique from the lower troposphere of the North, Equatorial and South Atlantic Ocean, northern and southern Indian Ocean, South and East China Sea and various coastal localities.Spectrographic analysis reveals that, on average, the particulates have concentrations of Mn, Ni, Co, Ga, Cr, V, Ba, and Sr which are of the same order of magnitude as those in average crustal material. In contrast, the average concentrations of Pb, Sn, and Zn are one order of magnitude higher than those in average crustal material.Within this “world-wide” average there are significant geographical variations in the distributions of Pb, Sn, and Zn which may be related to anthropogenic sources.On the basis of trace-element distributions lower tropospheric soil-sized marine particulates have been divided into four genetic components; local, zonal, inter-zonal, and global. The proportions of these components vary geographically, and each component may have both a natural and an anthropogenic fraction. 相似文献
14.
Klaus Kremling 《Marine Chemistry》1983,13(2):87-108
In June 1981, dissolved Zn, Cd, Cu, Ni, Co, Fe, and Mn were determined from two detailed profiles in anoxic Baltic waters (with extra data for Fe and Mn from August 1979). Dramatic changes across the O2H2S interface occur in the abundances of Cu, Co, Fe, and Mn (by factors of ?100). The concentrations of Zn, Cd, and Ni at the redox front decrease by factors between 3 to 5.Equilibrium calculations are presented for varying concentrations of hydrogen sulfide and compared with the field data. The study strongly supports the assumption that the solubility of Zn, Cd, Cu, and Ni is greatly enhanced and controlled by the formation of bisulfide and(or) polysulfide complexes. Differences between predicted and measured concentrations of these elements are mainly evident at lower ΣH2S concentrations.Cobalt proved to be very mobile in anoxic regions, and the results indicate that the concentrations are limited by CoS precipitation. The iron (Fe2+) and manganese (Mn2+) distribution in sulfide-containing waters is controlled by total flux from sediment-water interfaces rather than by equilibrium concentrations of their solid phases (FeS and MnCO3). The concentrations of these metals are therefore expected to increase with prolonged stagnation periods in the basin. 相似文献
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Maryd De Wemton John S. Clayton Rohan D. S. Wells Chris C. Tanner Suzanne T. Miller 《新西兰海洋与淡水研究杂志》2013,47(2):145-151
The submerged vegetation of Lakes Sumner, Marion, Katrine, Taylor, and Sheppard was surveyed in May 1987. These high‐altitude lakes lie at c. 600 m a.s.l., within the largely unmodified upper Hurunui catchment. Submerged vegetation was diverse and included numerous short shallow‐water species, dense swards of Isoetes alpinus, low covers of taller native vascular plants, and charophyte meadows beyond the depth limit of vascular plants to a maximum of 15 m. A sparse deepwater bryophyte community was observed from 11 to 32 m depth in Lake Sumner. Displacement of native vegetation by dense growths of the adventive oxygen weed Elodea canadensis over mid‐depths of 3–6 m was noted in all lakes, except Lake Marion. 相似文献
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While clastic mudstones and shale were traditionally interpreted to have been deposited in quiet water settings, recent flume experiments and studies have shown that mud can be transported in and deposited by traction currents as migrating ripples of mud aggregates. Despite these recent advances, mud aggregates have rarely been adequately described in the rock record.These mud aggregates and the sedimentary structures they form in mudstone successions are difficult to observe in the rock record due to compaction, which often obliterates the aggregates and flattens bedforms. This paper documents unambiguously identifiable sand sized mudstone aggregates in thin sections and SEM, transported in traction, and deposited in a series of prograding clinothems. These aggregates were sufficiently indurated to locally preserve shelter porosity, significantly improving the hydrocarbon reservoir properties.Grain size analysis of the aggregates was performed on thin sections, as well as disaggregated samples measured by a laser diffraction grain size analyzer for comparison. These analyses showed that sand sized aggregates often comprise more than half of the sediment volume. While the clay-rich composition of the Carlile Formation would suggest that it is a mudstone, statistical analysis of these grain size measurements show that it could alternatively be described as a silty sandstone. These findings potentially change how we think about mudstone classification, fine-grained sedimentation, and mudstone dominated petroleum reservoirs. 相似文献
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Cross-Calibration and Long-Term Monitoring of the Microwave Radiometers of ERS,TOPEX, GFO,Jason, and Envisat 总被引：1，自引：1，他引：0
The radiometers on board the satellites ERS-1, TOPEX/Poseidon, ERS-2, GFO, Jason-1, and Envisat measure brightness temperatures at two or three different frequencies to determine the total columnal water vapor content and wet tropospheric path delay, a major correction to the altimeter range measurements. In order to asses the long-term stability of the path delay, the radiometers are calibrated against vicarious cold and hot references, against each other, and against several atmospheric models. Four of these radiometers exhibit significant drifts in at least one of the channels, resulting in yet unmodeled errors in path delay of up to 1 mm/year, thus limiting the accuracy at which global sea level rise can be inferred from the altimeter range measurements. 相似文献
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Linjie Zheng Tomoharu Minami Shotaro Takano Hideki Minami Yoshiki Sohrin 《Journal of Oceanography》2017,73(5):669-685
A central theme of the ongoing GEOTRACES program is to improve the understanding of processes occurring at ocean interfaces with continents, sediments, and ocean crust. In this context, we studied the distributions of Al, Mn, Fe, Co, Ni, Cu, Zn, Cd, and Pb around the Juan de Fuca Ridge (JdFR) in total dissolvable (td), dissolved (d), and labile particulate (lp) fractions, which represent a fraction in unfiltered samples, filtered samples through an AcroPak capsule filter, and the difference between td and d, respectively. Al and Fe were dominated by lp-species, while Ni, Zn, and Cd were dominated by d-species with undetectable amounts of lp-species. Major findings in this study are as follows: (1) The continental margin (CM) provided large sources of Al, Mn, Fe, and Co from the surface to ~2000 m in depth. The supply from CM caused high surface concentrations of dMn and dCo, a subsurface (100–300 m depth) maximum of dCo, and intermediate (500–2000 m depth) maxima of lpAl and lpFe. The supply of dFe from CM was ~10 times that from the high-temperature hydrothermal activity at station BD21, which is located at ~3 km from the Middle Valley venting site and ~ 200 km from Vancouver Island. (2) DPb was maximum at the top layer of North Pacific Intermediate Water, probably owing to isopycnal transport of anthropogenic Pb via advection of subducted surface waters. Although dCo and dPb had different sources in the upper water, they showed a strong linearity below 300 m (r 2 = 0.95, n = 38), indicating concurrent scavenging. (3) A high-temperature hydrothermal plume occurred at a depth of 2300 m at BD21, accounting for maxima of dAl, dMn, dFe, lpCu, and lpPb and a minimum of dCu. (4) Strong bottom maxima of lpAl, lpMn, lpFe, lpCo, and lpPb occurred above the abyssal plain at the western foot of the JdFR, indicating resuspension of sediments. However, bottom maxima of d-species were apparent only for dAl and dCu. 相似文献
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The radiometers on board the satellites ERS-1, TOPEX/Poseidon, ERS-2, GFO, Jason-1, and Envisat measure brightness temperatures at two or three different frequencies to determine the total columnal water vapor content and wet tropospheric path delay, a major correction to the altimeter range measurements. In order to asses the long-term stability of the path delay, the radiometers are calibrated against vicarious cold and hot references, against each other, and against several atmospheric models. Four of these radiometers exhibit significant drifts in at least one of the channels, resulting in yet unmodeled errors in path delay of up to 1 mm/year, thus limiting the accuracy at which global sea level rise can be inferred from the altimeter range measurements. 相似文献