Applying Dynamic Energy Budget (DEB) theory to simulate growth and bio-energetics of blue mussels under low seston conditions     

R. Rosland   . Strand  M. Alunno-Bruscia  C. Bacher  T. Strohmeier 《Journal of Sea Research》2009,62(2-3):49

A Dynamic Energy Budget (DEB) model for simulation of growth and bioenergetics of blue mussels (Mytilus edulis) has been tested in three low seston sites in southern Norway. The observations comprise four datasets from laboratory experiments (physiological and biometrical mussel data) and three datasets from in situ growth experiments (biometrical mussel data). Additional in situ data from commercial farms in southern Norway were used for estimation of biometrical relationships in the mussels. Three DEB parameters (shape coefficient, half saturation coefficient, and somatic maintenance rate coefficient) were estimated from experimental data, and the estimated parameters were complemented with parameter values from literature to establish a basic parameter set. Model simulations based on the basic parameter set and site specific environmental forcing matched fairly well with observations, but the model was not successful in simulating growth at the extreme low seston regimes in the laboratory experiments in which the long period of negative growth caused negative reproductive mass. Sensitivity analysis indicated that the model was moderately sensitive to changes in the parameter and initial conditions. The results show the robust properties of the DEB model as it manages to simulate mussel growth in several independent datasets from a common basic parameter set. However, the results also demonstrate limitations of Chl a as a food proxy for blue mussels and limitations of the DEB model to simulate long term starvation. Future work should aim at establishing better food proxies and improving the model formulations of the processes involved in food ingestion and assimilation. The current DEB model should also be elaborated to allow shrinking in the structural tissue in order to produce more realistic growth simulations during long periods of starvation.  相似文献   

Development and validation of a TaqMan^TM fluorescent quantitative real-time PCR assay for the rapid detection of Edwardsiella tarda     

XIE Guosi  HUANG Jie  ZHANG Qingli  HAN Nan  SHI Chengyin  WANG Xiuhua 《海洋学报(英文版)》2012,31(4):140-148

Edwardsiella tarda is one of the most important emerging pathogens in the global aquaculture industries. As such, an accurate diagnosis and quantitative analytical methods are urgently needed for this bacterium. In this study, primers and a TaqMan probe specific to the conservative sequences of the 16S rRNA gene of E. tarda were designed. The concentration of primers and TaqMan probe were optimized to 200 nmol/L and 120 nmol/L, respectively. The detection sensitivity of the FQ-PCR assay was determined to be as low as five copies of the target sequence per reaction using the pGEM-16S rDNA recombinant plasmid as a template, which was 100 times more sensitive than conventional PCR. A standard curve by plotting the threshold cycle values （y） against the common logarithmic copies （log₁0 n_c as x; n_c is copy number） of pGEM-16S rDNA was generated. The results of intra-and inter-assay variability tests demonstrate that the established FQ-PCR method was highly reproducible. The assay was specific for E. tarda as it showed that there was no cross-reactivity to eight additional bacterial pathogen strains in aquaculture. Thus, the FQ-PCR assay has the potential for diagnostic purposes and for other applications, especially for the rapid detection and quantification of low-grade E. tarda infections.  相似文献   

Morphological and molecular evidence supports the first occurrence of two fishes,Siganus sutor(Valenciennes, 1835)and Seriolina nigrofasciata(Rüppell, 1829)(Actinopterygii:Perciformes), from marine waters of Odisha coast,Bay of Bengal,India     

Barik Tapan K.  Swain Surya N.  Sahu Bijayalaxmi  Tripathy Bibarani  Acharya Usha R. 《海洋学报(英文版)》2020,39(6):26-35

Marine ecosystems provide a wide variety of diverse habitats that frequently promote migration and ecological adaptation. The extent to which the geographic distribution of marine organism has reshaped by human activities remains underappreciated. The limitations intrinsic to morphology-based identification systems have engendered an urgent need for reliable genetic methods that enable the unequivocal recognition of fish species,particularly those that are prone to overexploitation and/or market substitution. In the present study, however, an attempt has been taken to identify two locally adapted fish species, Siganus sutor(Valenciennes, 1835) and Seriolina nigrofasciata(Rüppell, 1829) of order Perciformes, which happens to be the first record in Odisha coast,Bay of Bengal. The diagnostic characteristics of Siganus sutor are: dorsal fin XIII-10, anal fin VII-9, pectoral fin 15,pelvic fin II-3, while that of Seriolina nigrofasciata dorsal fin VI-I-35, anal fin I-17, pectoral fin 16, pelvic fin 5. All COI barcodes generated in this study were matched with reference sequences of expected species, according to morphological identification. Bayesian and likelihood phylogenetic trees were drawn based on DNA barcodes and all the specimens clustered in agreement with their taxonomic classification at the species level. The phylogeographic studies based on haplotype network and migration rates suggest that both the species were not panmitic and the high-frequency population distribution indicates successful migration. The result of this study provides an important validation of the use of DNA barcode sequences for monitoring species diversity and changes within a complex marine ecosystem.  相似文献   

太平洋双色鳗鲡(Anguilla bicolor pacifica)与其它3种鳗鲡的形态差异分析          下载免费PDF全文

罗鸣钟  关瑞章  李忠琴  靳恒  徐继松 《海洋与湖沼》2013,44(2):389-395

通过传统形态学数据和框架结构数据相结合,应用方差、聚类、判别和主成分等4种多元分析方法,分析了太平洋双色鳗鲡与日本鳗鲡、美洲鳗鲡和花鳗鲡的形态差异。结果表明:(1)太平洋双色鳗鲡背鳍前端与臀鳍前端之间的垂线距离占全长的1.4%,属短鳍型鳗鲡。(2)太平洋双色鳗鲡与其它3种鳗鲡形态差异显著。在可数性状中,太平洋双色鳗鲡的总脊椎骨数显著小于日本鳗鲡,显著大于美洲鳗鲡和花鳗鲡,背鳍前脊椎骨数显著大于其它3种鳗鲡;在可量性状中,太平洋双色鳗鲡的吻长显著小于美洲鳗鲡和花鳗鲡,显著大于日本鳗鲡;在框架结构性状中,太平洋双色鳗鲡有6项性状与其它3种鳗鲡差异显著。(3)太平洋双色鳗鲡的背鳍起点与其它3种鳗鲡相比最靠后,背鳍起点在鳗鲡分类研究中可作为重要的框架结构定位点。本研究可为太平洋双色鳗鲡的合理引进和种质保护提供资料。  相似文献   

基于几何形态测量学的4种金线鱼矢耳石识别研究   总被引：4，自引：0，他引：4  

侯刚  王学锋  朱立新  卢伙胜  冯波 《海洋与湖沼》2014,45(3):496-503

利用2007年9月至2010年9月采自北部湾海域的24尾红棘金线鱼(Nemipterus nemurus)、32尾金线鱼(N.virgatus)、36尾深水金线鱼(N.bathybius)和35尾日本金线鱼(N.japonicus)性成熟后的矢耳石样本,运用几何形态测量学方法研究了4种鱼类矢耳石形态识别问题。耳石经图像处理后提取地标点坐标值,进行相对扭曲主成分分析,通过判别分析区分4种金线鱼的耳石,利用薄板样条分析和网格变形分析耳石形态变异。结果表明:在相对扭曲主成分分析中,第1、2、3主成分分别解释了总变异的30.78%、28.44%和11.75%,可以将四种金线鱼耳石区分开来。其中Ⅰ型地标点6、10、11,Ⅱ型地标点2,Ⅲ型地标点7,贡献作用较大,解释了主要形态变异。相对扭曲主成分的逐步判别分析中,四种鱼的平均判别成功率达91.3%;交互验证结果显示,四种鱼的平均判别成功率达89.8%,表明几何形态测量学分析可以作为鱼种耳石识别的有效方法之一,在耳石形态学与鱼种判别研究中具有重要应用价值。  相似文献   

白令海北部陆坡全新世以来长链正构烷烃的古环境意义     

张海峰  王汝建  肖文申 《海洋学报(英文版)》2017,36(8):137-145

本文对白令海北部陆坡B2-9站位沉积物岩芯开展了高分辨率的生物标志物分析,获得了研究区近一万年来陆源长链正构烷烃（简写为烷烃）的输入及其源区植被结构的变化等相关记录。结果表明,nC₂₇是烷烃中最高的主碳峰,对烷烃总量的贡献也最大,这可能与源区木本植物的丰度及其分布有关;nC₂₃的含量也较高,可能主要是来源于北半球沿海地区广泛分布的一类沉水植物。全新世期间,烷烃总量分别在7.8 ka B.P.,6.7 ka B.P.和5.4 ka B.P.经历了三次阶梯状的下降过程,呈现出四个相对稳定的阶段,可能主要受控于早全新世海平面上升以及源区气候环境和植被分布的变化。烷烃的分子组合特征各参数（如CPI、ACL以及nC₃₁/nC₂₇等）的变化则表明,烷烃主要来自陆生高等植物,且全新世期间植被结构较为稳定,木本植物占据优势。此外,在几个较短的时期内,烷烃总量及其分子组合特征等参数的变化具有同步性,表明在这些时期特殊的气候条件下,源区木本植物烷烃对烷烃总量的贡献率的增加可能低于草本植物烷烃和化石烷烃。  相似文献   

基于拓扑网络研究海州湾食物网结构与复杂性   总被引：1，自引：0，他引：1  

徐从军  刘阳  程远  徐宾铎  张崇良  任一平  薛莹 《海洋学报》2020,42(4):47-54

针对食物网结构与复杂性的研究有助于深入解析食物网的功能、营养动力和能量转化过程。本文根据2011年3?12月在海州湾及其邻近海域进行的5个航次的渔业资源底拖网调查资料以及胃含物分析数据，基于11个拓扑网络指数，构建了海州湾拓扑网络，研究海州湾食物网的结构与复杂性。结果表明，本文分析的海州湾食物网物种数S为93，连接数L为1 021，每个物种的相互作用数量L/S为10.98，连接性L/S2为0.12；顶级物种、中间物种、基础物种的比例分别为29%、69%和2%；食物网的杂食性指数为87%，连接复杂性指数SC为22.20，特征路径长度ChPath为2.11，聚类系数CC为0.23。通过每个物种的相互作用数量和连接性的研究显示，L/S和L/S2的值都处在正常范围内，所以海州湾食物网的复杂性仍保持较高水平。通过物种比例、杂食性指数、连接复杂性指数、特征路径长度、聚类系数对食物网结构分析，发现海州湾食物网结构处于稳定状态，能够在一定程度上抵御外界环境的扰动，保证生态系统功能的正常运行。通过对海州湾食物网结构与复杂性的研究，将为今后海州湾食物网功能的深入研究以及海州湾渔业资源的科学管理提供重要依据。  相似文献   

Sources and preservation of organic matter in Plum Island salt marsh sediments (MA, USA): long-chain n-alkanes and stable carbon isotope compositions     

X. -C. Wang  R. F. Chen  A. Berry 《Estuarine, Coastal and Shelf Science》2003,58(4):917-928

Elemental (TOC, TN, C/N) and stable carbon isotopic (δ¹³C) compositions and n-alkane (nC_16–38) concentrations were measured for Spartina alterniflora, a C₄ marsh grass, Typha latifolia, a C₃ marsh grass, and three sediment cores collected from middle and upper estuarine sites from the Plum Island salt marshes. Our results indicated that the organic matter preserved in the sediments was highly affected by the marsh plants that dominated the sampling sites. δ¹³C values of organic matter preserved in the upper fresh water site sediment were more negative (−23.0±0.3‰) as affected by the C₃ plants than the values of organic matter preserved in the sediments of middle (−18.9±0.8‰) and mud flat sites (−19.4±0.1‰) as influenced mainly by the C₄ marsh plants. The distribution of n-alkanes measured in all sediments showed similar patterns as those determined in the marsh grasses S. alterniflora and T. latifolia, and nC₂₁ to nC₃₃ long-chain n-alkanes were the major compounds determined in all sediment samples. The strong odd-to-even carbon numbered n-alkane predominance was found in all three sediments and nC₂₉ was the most abundant homologue in all samples measured. Both δ¹³C compositions of organic matter and n-alkane distributions in these sediments indicate that the marsh plants could contribute significant amount of organic matter preserved in Plum Island salt marsh sediments. This suggests that salt marshes play an important role in the cycling of nutrients and organic carbon in the estuary and adjacent coastal waters.  相似文献   

Seagrass landscape-scale changes in response to disturbance created by the dynamics of barrier-islands: A case study from Ria Formosa (Southern Portugal)     

A.H. Cunha  R.P. Santos  A.P. Gaspar  M.F. Bairros 《Estuarine, Coastal and Shelf Science》2005,64(4):636-644

This study documents long-term changes of a Zostera noltii landscape induced by a natural cyclic event in a coastal lagoon. The barrier-islands forming this system are very dynamic with drifting movements controlling ecological patterns and processes occurring in this area. Changes in the areal extent of the Z. noltii meadows were assessed using historical aerial photographs from 1940, 1980, 1989, 1996 and 1998. Landscape indices such as total patch area (TA), mean patch size (MPS), number of patches (NP), mean shape coefficient of variation (CV) and landscape fractal dimension (D) were calculated for each year and related to an index of disturbance intensity. The spatial distribution of the Z. noltii meadows varied greatly during the studied period and changes observed were related to the disturbance created by the barrier-islands' spatial dynamics. After an artificial inlet relocation the Z. noltii area, number of patches, patch mean size and coefficient of variation decreased. The fractal dimension of the Z. noltii landscape increased by 50% showing that besides a decrease in total area, number of patches, and patch mean area, patch fragmentation was an important consequence of this anthropogenic disturbance.Seagrass natural distribution patterns changed in response to natural and human-induced activities. This study emphasizes the importance of the landscape approach and the historical perspective when studying seagrass changes and the importance of taking into consideration long-term changes in seagrass landscapes to avoid confusion between man-induced effects with natural cyclic events.  相似文献   

Anisotropic Drained Deformation Behavior and Shear Strength of Natural Soft Marine Clay     

Yu-Ke Wang  Yu-Feng Gao  Yue Qiu  Xiu-Qing Hu  Ying Zhang 《Marine Georesources & Geotechnology》2016,34(5):493-502

The deformation behavior and shear strength of soft marine clays subjected to wave or traffic loads are different from that in triaxial loading due to the changes of major principal stress direction β and intermediate principal stress coefficient b. To investigate the anisotropy affected by β and b in natural soft marine clay, a series of drained tests were conducted by hollow cylinder apparatus. The principal stress direction relative to vertical direction were maintained constant under an increasing shear stress, with fixed intermediate principal stress coefficient b. The influence of the b and β on anisotropy of typically Wenzhou intact clay is discussed. It was found that octahedral stress–strain relationships expressed anisotropy with different b and β. The friction angle and deviator stress ratio with different b and β were presented to provide guidance for engineering projects in the coastal zone.  相似文献   

珠江口3种鲸豚的MHC-I基因多态性研究     

余新建  张西阳  林文治  周蕊莲  吴玉萍 《海洋科学》2016,40(10):126-133

旨在了解珠江口栖息的中华白海豚(Sousa chinensis)、宽脊江豚(Neophocaena phocaenoides)和点斑原海豚(Stenella attenuate)免疫相关基因MHC-I(Major Histocompatibility Complex)的多态性及其表达情况,以期为这3种鲸豚的保育工作提供基础资料。通过克隆测序的方法,首次证实MHC-I基因在这3种鲸豚体内表达。选择压力分析,表明MHC-I基因在这3种鲸豚中均受到强烈的正选择作用,提示其具有重要的免疫功能。3种鲸豚的MHC-I基因在系统发育树上相互混杂在一起,表明MHC-I基因存在跨物种多态性。结合选择压力分析和跨物种多态性,发现MHC-I基因受到平衡选择作用。珠江口3种鲸豚MHC-I基因多态性可能由平衡选择维持。  相似文献   

裂片石莼营养价值的评价及其多糖制备的初步研究   总被引：1，自引：0，他引：1  

叶方方  吴后波  向文洲  吴华莲  戴世鲲  贾其坤  陈灿坤 《海洋科学》2015,39(3):33-41

对采自福建的野生裂片石莼(Ulva fasciata)进行了分类学鉴定和营养价值评估;采用微波加热新方法,进一步研究了裂片石莼多糖提取工艺。研究结果表明,裂片石莼的总糖、粗蛋白质、总氨基酸和总脂含量分别为34.38%、27.60%、25.20%、11.70%;其必需氨基酸含量为10.0%,氨基酸比值系数分(SRC)=79.77;裂片石莼的重金属元素含量达到国家海藻制品的限量标准。研究结果还表明,通过正交实验优化微波加热提取工艺,与传统加热提取工艺相比,裂片石莼多糖的得率提高了21.35%,而耗能降低了58.51%。  相似文献   

大口黑鲈(Micropterus salmoides)致病性维氏气单胞菌的分离鉴定及其特性分析     

雷宁  郝贵杰  黄爱霞  王雨辰  林锋  沈小明  朱俊杰 《海洋与湖沼》2022,53(5):1180-1188

大口黑鲈(Micropterus salmoides)是我国重要的淡水养殖经济鱼类品种,目前包括细菌性疾病在内的诸多因素影响了其养殖业的健康发展。维氏气单胞菌是引起淡水鱼败血症和溃疡综合征的重要病原菌。从患病大口黑鲈肝脏组织中分离到1株病原菌,通过形态学观察、生理生化特性分析、16S rRNA序列和特定毒力基因分析对其进行鉴定,并通过人工回归感染试验和药敏试验分析其致病性和耐药性。结果表明该菌为致病性维氏气单胞菌(Aeromonas veronii),含有aer、act、lip、fla、gcaT和OMPA I等毒力基因;药敏试验显示其对头孢曲松、氯霉素、氟苯尼考、强力霉素、四环素、多粘菌素、复方新诺明、左氟沙星等8种抗生素高度敏感,对新霉素、恩诺沙星、庆大霉素、链霉素、阿齐霉素、环丙沙星等6种抗生素中度敏感,对其他8种抗生素具有一定耐药性;人工回归感染实验表明该菌具有较高的致病性,对大口黑鲈的半致死浓度为1.4×10⁶ CFU/mL。维氏气单胞菌是水产养殖中的条件性致病菌,研究结果揭示了该菌株的部分生物学特性,有利于丰富维氏气单胞菌属的基础数据,同时也为鲈鱼养殖过程中的病害防控提供了一定的参考依据。  相似文献   

Use of submerged aquatic vegetation as habitat by young-of-the-year epibenthic fishes in shallow Maine nearshore waters     

M.A. Lazzari  B.Z. Stone 《Estuarine, Coastal and Shelf Science》2006,69(3-4):591

Epibenthic fishes were collected with daytime beam trawl tows (n = 1713) in three shallow (<10 m) habitats of submerged aquatic vegetation (SAV), Zostera marina (eelgrass), Laminaria longicruris (kelp), Phyllophora sp. (algae), and unvegetated sandy/mud areas. We divided the Maine coast into three broad zones based upon geological features and sampled over five consecutive years; during April–November 2000 in the mid coast, in 2001 and 2002 along the south coast and in 2003 and 2004 along the eastern Maine coast. We quantified habitat use by eight economically important fish species (Gadus morhua, Microgadus tomcod, Pollachius virens, Urophycis chuss, Urophycis tenuis, Osmerus mordax, Tautogolabrus adspersus, and Pseudopleuronectes americanus) and 10 other common epibenthic species (n = 18 571). We identified the physical and biological variables most important in discriminating between habitats with and without individual fish species. Logistic regression models based on nearshore habitat characteristics were developed to predict the distribution of these species along the three zones representing broad geological regions of the Maine coast. Logistic regression models correctly classified individual fish species 58.7–97.1% of the time based on the temporal and physical habitat variables (month, temperature, salinity, and depth) and the presence–absence of submerged aquatic vegetation (Zostera, Laminaria, or Phyllophora). Overall fish presence and economically important fish presence were correctly classified 61.1–79.8% and 66.0–73.6% of the time, respectively. The Maine shallow water fish community was composed primarily of young-of-the-year and juvenile fishes with all habitats functioning as facultative nursery areas. Presence of most fish species was positively associated with Zostera, Laminaria, and to a lesser extent, Phyllophora. This study provides direct evidence of shallow waters of the Gulf of Maine as critical facultative nursery habitat for juvenile G. morhua, M. tomcod, P. virens, U. tenuis, U. chuss, T. adspersus, O. mordax and P. americanus, and many ecologically important species.  相似文献   

法紫菜生物多样性及其栽培生物学基础     

王旭雷  马颖超  鲁晓萍  姜波  沈宗根  陆勤勤  沈颂东  卢山  何林文  牛建峰  汪文俊  夏邦美  茅云翔  陈昌生  谢潮添  骆其君  邵魁双  陈伟洲  王广策 《海洋科学》2017,41(2):125-135

综述了重要经济红藻法紫菜属物种多样性及其地理分布,修订了法紫菜属中文名称,回顾了紫菜生活史研究的历程,基本概括了法紫菜栽培生物学基础研究成果。根据文献报道及最新研究成果,认为紫菜属和法紫菜属共有138个物种,集中分布在北半球的温带、亚热带海域,其中我国是物种多样性较高的国家之一,其物种及变种数达到25个。法紫菜生活史的阐明对紫菜栽培产业的发展具有奠基性的作用,其中我国藻类学家曾呈奎和张德瑞在法紫菜生活史研究中作出了重要的贡献,提出了壳孢子的概念,被广泛接受并沿用至今。壳孢子采苗和丝状体培养技术是发展紫菜栽培业的重要基础,丝状体生长发育及壳孢子形成的分子机制将是未来法紫菜生物学研究的重点和难点。尽管根据已发表的相关文献大致梳理了法紫菜相关生物学基础研究的成果,但限于篇幅对栽培生产中相关技术的优化、完善与推广以及新品种培育等均未作介绍。  相似文献   

Comparison of Ocean Surface Wind Stress Computed with Different Parameterization Functions of the Drag Coefficient     

Paul A. Hwang 《Journal of Oceanography》2005,61(1):91-107

Depending on the choice of reference wind speed, the quantitative and qualitative properties of the drag coefficient may vary. On the ocean surface, surface waves are the physical roughness at the air-sea interface, and they play an important role in controlling the air-sea exchange processes. The degree of dynamic influence of surface waves scales with wavelength. Drag coefficient computed with the reference wind speed at an elevation proportional to the wavelength (for example, U _λ/2) is fundamentally different from the drag coefficient computed with the wind speed at fixed 10 m elevation (U ₁₀). A comparison has been carried out to quantify the difference in wind stress computation using several different parameterization functions of the drag coefficient. The result indicates that the wind stress computed from U ₁₀ input using a drag coefficient referenced to U _λ/2 is more accurate than that computed with drag coefficient functions referenced to U ₁₀.  相似文献   

The density functional study of the stabilities, bond characters, static linear polarisabilities, and aromaticities of the `in-out'' isomerism H_n-60@C_nH₆₀ (n=70, 72, 74)