Expression of putative zinc-finger protein lcn61 gene in lymphocystis disease virus China （LCDV-cn） genome   总被引：1，自引：0，他引：1  

闫秀英  孙修勤 《中国海洋湖沼学报》2009,27(2):337-341

An open reading frame (lcn61) of lymphocystis disease virus China (LCDV-cn), probably responsible for encoding putative zinc-finger proteins was amplified and inserted into pET24a (+) vector. Then it expressed in E. coli BL21 (DE3), and His-tag fusion protein of high yield was obtained. It was found that the fusion protein existed in E. coli mainly as inclusion bodies. The bioinformatics analysis indicates that LCN61 is C2H2 type zinc-finger protein containing four C2H2 zinc-finger motifs. This work provides a theory for functional research of lcn61 gene. Supported by High Technology Research and Development Program of China (863 Program, No. 2006AA100309)  相似文献   

传统村落景观基因信息链与自动识别模型构建——以陕西省为例   总被引：2，自引：0，他引：2  

杨晓俊  方传珊  王益益 《地理研究》2019,38(6):1378-1388

传统村落作为活的文化遗产,承载了大量历史记忆,是地域文化景观基因识别与模型构建研究的重要切入点。以陕西省71个国家级传统村落为例,基于景观基因理论建立陕西省传统村落景观基因识别体系,识别出陕西省传统村落景观基因特征;运用类型学原理和N级编码理论对景观基因进行编码,构建陕西省传统村落景观基因信息链并生成基因谱系;借鉴生物学中“胞-链-形”DNA碱基序列模型,提取出环境基因、建筑基因、农耕文化基因和宗族文化基因四个公共基因作为景观基因元（胞）,以村内道路系统作为基因链,构建传统村落景观基因DNA模型与自动识别模型,以此对传统村落的区位、类型、特征和文化基因进行自动识别。为传统村落景观基因信息有效传承与存储,以及乡村建设动态发展提供理论借鉴。  相似文献   

溶藻弧菌asp基因在大肠杆菌中表达活性研究及条件优化   总被引：1，自引：0，他引：1  

蔡双虎  鲁义善  吴灶和  简纪常  汤菊芬  黄郁葱 《广东海洋大学学报》2008,28(3)

为进一步研究溶藻弧菌碱性丝氨酸蛋白酶(ASP)蛋白生物学活性和功能,将构建的pET23d-asp在大肠杆菌BL21(DE3)中表达,对表达产物进行纯化分析,并优化表达条件。结果表明:在咪唑洗脱缓冲液浓度为100 mmol/L时,表达的可溶性ASP被大量洗脱,纯化的ASP相对分子质量约为42 000,具有蛋白活性;在诱导温度28℃、异丙基-β-D硫代半乳糖苷(Isopropyl-β-D-thiogalactopyranoside,IPTG)浓度1 mmol/L及诱导时间16 h时,表达的活性ASP蛋白最多。  相似文献   

黄斑篮子鱼去毒相关基因的克隆与肝脏组成型表达分析   总被引：1，自引：0，他引：1  

王琳  梁旭方  林群  李光照  胡永乐 《热带海洋学报》2009,28(6):79-87

从基因水平探讨海洋鱼类对海洋藻毒素的去毒分子机理。采用RT-PCR法成功克隆了黄斑篮子鱼Siganus oramin肝脏I时相代谢酶细胞色素P450 1A(CYP1A)、II时相代谢酶alpha型谷胱甘肽S-转移酶(GSTA)和rho型谷胱甘肽S-转移酶(GSTR)、热休克蛋白70 (HSP70)、alpha 1型钠钾ATP酶(ATP1A1)及β-肌动蛋白(beta-actin, ACT)基因cDNA核心序列，序列分别长879 bp、582 bp、588 bp、660 bp、749 bp和554 bp。序列同源性分析发现，属鲈形目的黄斑篮子鱼CYP1A、GSTA和GSTR与同属鲈形目的牙鲆Paralichthys olivaceus、欧洲鲽Pleuronectes platessa、真鲷Pagrus major、鲤形目的斑马鱼Brachydanio rerio 相应氨基酸序列同源性较高，CYP1A和GSTA与非洲爪蟾(两栖类)、鸡(鸟类)、小鼠、大鼠和人(哺乳类)相应氨基酸序列同源性低，这可能与鱼类I、II时相去毒酶基因承担水环境毒素去毒代谢的特殊功能有关；而HSP70、ATP1A和β-肌动蛋白在鱼类、两栖类、鸟类、哺乳类中均有较高的同源性，这可能与这些基因在机体中承担的最基本的生命功能相关。应用半定量RT-PCR的方法，以β-肌动蛋白作为外参照，在指数期增长范围内分别得到了CYP1A、GSTA、GSTR、HSP70和ATP1A1 mRNA与β-肌动蛋白mRNA (%)的比值，确定黄斑篮子鱼肝脏去毒相关基因的组成型表达水平。其中，黄斑篮子鱼肝脏CYP1A、GSTA和GSTR基因组成型表达相对较高，HSP70和ATP1A1基因组成型表达相对较低，这可能与不同基因在黄斑篮子鱼海洋藻毒素去毒分子机理中承担的作用相关，为海洋藻毒素在海洋鱼类中的积聚及代谢去毒分子机制的研究提供了相关数据。  相似文献   

一株海洋细菌铁吸收调节蛋白(Fur)基因的克隆和表达     

李俊峰  姚淑敏  李红芳  田智刚  郭庆杰 《海洋湖沼通报》2009,(4)

对海洋细菌来说铁是一种必需元素,对铁吸收与利用的调控在细菌生长和防止铁毒性中起重要作用,在革兰氏阴性细菌中,铁的代谢由铁吸收调节蛋白(Fur) 来调控.橙色交替单胞菌是1种具有广泛抑菌谱的有益菌,本研究克隆表达了橙色交替单胞菌的fur基因,并分析了其相关特征.该基因序列中包含447bp的开放阅读框,编码148个氨基酸残基的蛋白,推导的相对分子量为16.637 kD,与GenBank报道的革兰氏阴性菌的相应序列同源性很高,其中氨基酸序列的中段从G47位至D104位,为高度保守区域.在限铁和富铁培养条件下铁载体分泌量的结果分析表明,fur基因可在大肠杆菌中大量表达,为进一步研究Fur蛋白的结构与功能打下基础.  相似文献   

Light-induced disassembly of dusty bodies in inner protoplanetary discs: implications for the formation of planets     

Gerhard Wurm 《Monthly notices of the Royal Astronomical Society》2007,380(2):683-690

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基于Cyt b基因序列的南海北部蓝圆鲹群体遗传多样性研究          下载免费PDF全文

牛素芳  吴仁协  张丽艳  张浩冉  梁锐  李忠炉 《应用海洋学学报》2018,37(2):263-273

为了解南海北部蓝圆鲹(Decapterus maruadsi)的群体遗传变异特征,本研究利用线粒体DNA Cyt b基因部分序列对9个群体共203个个体进行群体遗传多样性和遗传结构分析.结果显示:在722 bp长的Cyt b部分序列中,共检测出52个多态位点,定义25个单倍型;群体的单倍型多样性(h)为0.577±0.036,核苷酸多样性(π)为0.001 55±0.001 12,整体遗传多样性呈中等偏低水平,其中雷州半岛和海南岛以东5个群体的遗传多样性水平明显高于以西的4个北部湾群体.单倍型系统发育树和网络图均未表现出与地理位置相对应的谱系结构,单倍型网络图呈以主体单倍型为中心的星状结构.群体间的Fst值为-0.077~0.018,且统计检验均不显著(p0.05).分子方差分析(AMOVA)表明,遗传变异全部来源于群体内个体间.Tajima's D值和Fu's Fs值均为显著负值,核苷酸不配对分布呈明显的单峰分布.南海北部蓝圆鲹群体约在29 000a前可能发生过扩张事件,导致遗传多样性呈现高h、低π模式;9个群体间的遗传分化并不显著,符合是一个随机交配种群的假设,但9个群体的遗传多样性水平却表现出明显的地理趋势,提示将南海北部蓝圆鲹作为单一种群进行渔业管理需持谨慎态度.  相似文献   

Cloning and phylogenetic analysis of a fatty acid elongase gene from Nannochloropsis oculata CS179     

Kehou Pan  Xiaolei Ma  Jianzhong Yu  Baohua Zhu  Guanpin Yang 《中国海洋大学学报(英文版)》2009,8(4):392-398

Nannochloropsis oculata CS179, a unicellular marine microalga, is rich in long-chain polyunsaturated fatty acids (LCPUFAs). Elongase and desaturase play a key role in the biosynthesis of PUFAs. A new elongase gene, which encodes 322 amino acids, was identified via RT-PCR and 5′ and 3′ RACE. The sequence of the elongase gene was blast-searched in the NCBI GenBank and showed a similarity to those of the cryptosporidium. But the NJ-tree revealed that the N. oculata CS179 elongase clustered with those of the microalgae Phaeodactylum tricornutum, Ostreococcus tauri and Thalassiosira pseudonana.  相似文献   

Molecular ecological study of <Emphasis Type="Italic">Siganus spinus</Emphasis> and <Emphasis Type="Italic">S. guttatus</Emphasis> from Okinawan waters based on mitochondrial DNA control region sequences     

Kensuke Iwamoto  Akihiro Takemura  Tetsuo Yoshino  Hideyuki Imai 《Journal of Oceanography》2009,65(1):103-112

The mitochondrial DNA (mtDNA) control region was sequenced to examine the genetic variability and gene flow of juvenile Siganus spinus and S. guttatus. In total, 461 nucleotide sequences were obtained from 69 specimens of juvenile S. spinus from Okinawa Island and Ishigaki Island, in which 17 variable sites and 22 haplotypes were identified. Haplotype diversity (h) was high (0.9244 in Okinawa and 0.8984 in Ishigaki), whereas nucleotide diversity (π) was low (0.0063 in Okinawa and 0.0059 in Ishigaki). The two populations were not genetically distinct. Siganus guttatus, which do not form large schools at recruitment, in contrast S. spinus, were also analyzed by studying 152 individuals collected off Okinawa Island, Miyako Island, and Ishigaki Island. Of 476 nucleotide sequences, 50 were variable, and 42 haplotypes were identified. Genetic variability values were high (h = 0.8766 and π = 0.0151 in Okinawa; h = 0.9640 and π = 0.0192 in Miyako; h = 0.9161 and π = 0.0199 in Ishigaki). The Okinawa population was genetically isolated from the Miyako and Ishigaki populations. As a result, genetic diversity was high for each of these siganid populations despite their being target species for fisheries; however, the degree of inter-population gene flow was higher for S. spinus than S. guttatus, suggesting that these species exhibit different dispersal strategies.  相似文献   

Isolation and identification of bacteria associated with the surfaces of several algal species     

王子峰  肖天  逄少军  刘敏  岳海东 《中国海洋湖沼学报》2009,27(3):487-492

We conducted this study to assess the diversity of bacteria associated with the surfaces of algae based on 16S rDNA sequence analyses.Twelve strains of bacteria were obtained from the surfaces of the following four species of algae:Gracilaria textorii,Ulva pertusa,Laminaria japonica,and Polysiphonia urceolata.The isolated strains of bacteria can be divided into two groups:Halomonas and Vibrio,in physiology,biochemical characteristics and 16S rDNA sequence analyses.The phylogenetic tree constructed based on ...  相似文献