Biofiltration of Pyridine by Shewanella putrefaciens in a Corn‐Cob Packed Biotrickling Filter     

Anil Kumar Mathur  C. B. Majumder 《洁净——土壤、空气、水》2008,36(2):180-186

In this study, a new strain of microorganism Shewanella putrefaciens was used for biofiltration of a pyridine laden air stream in a corn‐cob packed biotrickling filter. In the biotrickling filter tested with S. putrefaciens, the maximum removal of pyridine is determined to be 100% at less than the average inlet concentration of 0.653 g m^–3 and more than 93% at a higher average inlet concentration of 1.748 g m^–3 (phase VIII) with an empty bed residence time (EBRT) of 106 s. However, when the biotrickling filter was operated at a low EBRT of 53 s and almost the same average inlet concentration of 1.752 g m^–3 (phase VII), the removal level attained was not greater than 85%. The maximum elimination capacity (EC) of the biotrickling filter was 102.34 g m^–3h^–1 at an inlet pyridine load of 119.62 g m^–3h^–1 with an EBRT of 53 s in phase VII. The maximum deviation of the EC from the 100% conversion line varied from 0.257 to 10.166% when going from phase I to VIII. Kinetic analysis showed that the maximum removal rate, r_max, and saturation constant, K_s, values for pyridine were calculated as 0.24 g m^–3h^–1 and 6.44 g m^–3, respectively, with a correlation coefficient, R², of 0.9939 and a standard deviation of error of 23.94%. The information contained herein indicates that the corn‐cob packed biotrickling filter inoculated by S. putrefaciens should provide excellent performance in the removal of gaseous pyridine.  相似文献   

Bacterial wax esters in recent fluvial sediments     

《Organic Geochemistry》2015

We investigated the molecular inventory of River Danube sediments and identified wax esters with 28–36 carbons, with C₃₀, C₃₁ and C₃₂ homologs the most abundant. They consist of various combinations of n-, iso- and anteiso-aliphatic acid and alcohol moieties, with different isomer distributions for the esters with odd and even carbon numbers. The short chain length (C₂₈–C₃₆), high proportion of methyl moieties and presence of monounsaturated esters together suggest a bacterial origin for the wax esters. The concentration in surface sediments varied from 0 to 741 μg/kg, being significantly enriched at locations with high nutrient concentration and high primary productivity. Cluster analysis of denaturing gradient gel electrophoresis (DGGE) band patterns revealed different bacterial communities in surface sediments from the stream and surface sediments from the reservoir. The concentration in a 70 cm core of rapidly deposited sediments decreased significantly with depth, following first order kinetics, suggesting a loss of the esters within ca. 3 years following burial and hence a low probability for preservation in the geological record. Wax esters in rivers have rarely been investigated; our results suggest that they represent a bacterial response to enhanced primary production, triggered by higher nutrient supply.  相似文献   

Benthic foraminifera from the deep-water Niger delta (Gulf of Guinea): Assessing present-day and past activity of hydrate pockmarks     

《Deep Sea Research Part I: Oceanographic Research Papers》2014

We present ecological and isotopic (δ¹⁸O and δ¹³C) data on benthic foraminifera sampled from 4 deep-sea stations in a pockmark field from the deep-water Niger delta (Gulf of Guinea, Equatorial Atlantic Ocean). In addition, a series of sedimentological and (bio)geochemical data are shown to back up foraminiferal observations. All stations are located within 1.2 km of each other, so prevailing oceanographic conditions can be assumed to be similar at each site. Two of the sites (GMMC-01 and GMMC-02) are located in a pockmark (named “pockmark A”) where current methane seepages were recorded by ROV observations. A third station (GMMC-03) is located in the topographic depression interpreted as a collapsed pockmark (named “pockmark B”). The fourth site (GMMC-04) is a reference station, without evidence of past or present seepages. Our observations show that degraded organic matter with low bio-availability is present at all stations with a preferential burial of organic compounds in topographic depressions (GMMC-03 station). Authigenic aragonite is abundant in surface sediments at stations GMMC-01 and -02. Its precipitation is likely related to high rates of methane oxidation during past seep events in episodically active pockmark A. In contrast, the absence of anaerobic methanotrophic Archaea (ANME) during the sampling period (November 2011) suggests that only moderate sulphide and methane oxidation take place close to the sediment–water interface. Compared to the reference site GMMC-04, living foraminifera at the collapsed and episodically active pockmarks show minor changes in terms of diversity, standing stocks and faunal composition. However, the δ¹³C signal of living and dead (but well-preserved) foraminiferal species (Ceratobulimina contraria, Melonis barleeanus, Uvigerina peregrina) is depleted in the episodically active pockmark A compared to the other stations. Overgrowth of authigenic carbonate on altered foraminifera generates an important shift to lower δ¹³C values. Dead faunas carry a complex time-averaged message, integrating taphonomic gains and losses related to the temporal variability of gas emission. They reveal major faunal differences that may be useful to detect gas hydrate seepages in different pockmark stages.  相似文献   

Accessing the Carbofuran Degradation Ability of Cultures From Natural River Biofilms in Different Environments     

《洁净——土壤、空气、水》2017,45(5)

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Sponge heterotrophic capacity and bacterial community structure in high‐ and low‐microbial abundance sponges     

Ericka Poppell  Jeremy Weisz  Lori Spicer  Andrew Massaro  April Hill  Malcolm Hill 《Marine Ecology》2014,35(4):414-424

The ecological and evolutionary forces that shape interactions between marine sponges and their symbiotic microbiota remain poorly understood. Considerable work has been done to characterize the sponge microbiome, and this research has shown that there are two distinct types of sponges: those with high microbial abundances (HMA) and those with low microbial abundances (LMA). There is no clear evolutionary driver for this distinction, and we have only a limited understanding of how HMA or LMA status affects host phenotypes (e.g. feeding behavior, capacity for nutrient cycling). We had two primary goals with the present study. First, we used a variety of microscopic techniques to compare aspects of host biology (e.g. choanocyte chamber morphology and density) in the context of symbiont status. Secondly, we used molecular approaches to uncover components of ecological structure of bacterial communities in HMA versus LMA sponges (e.g. species richness, evenness). We found that choanocyte chamber density is greater in LMA sponges than in HMA sponges. We also found distinct patterns of organization for bacterial communities in HMA and LMA sponges, although environmental factors, to a lesser degree, also influence community structure in the Floridian sponges we examined. These results suggest that the large bacterial communities found in HMA sponges may allow the host to decrease their heterotrophy versus that of LMA sponges with minimal bacterial communities.  相似文献   

Lipid and 13C signatures of submicron and suspended particulate organic matter in the Eastern Tropical North Pacific: Implications for the contribution of Bacteria     

《Deep Sea Research Part I: Oceanographic Research Papers》2014

The contribution of bacterial biomass to total particulate organic matter (POM) in the ocean, including exported material, is poorly constrained. To examine potential signatures for the presence and export of bacterioplankton and their detrital remains, here we provide a detailed compound-specific ¹³C characterization of fatty acids from membrane polar lipids obtained from a water column profile in the Eastern Tropical North Pacific. POM of submicron size (0.2–0.7 μm; “X-POM”) was sampled and analyzed separately from the size class typically collected as “suspended” POM (0.7–53 μm; “L-POM”). The distributions of polar head group classes, specific fatty acid side chains, and natural ¹³C contents all vary, both between particle size classes and with depth in the water column. In general, the polar lipids in submicron material – and by inference, lipids of bacterial origin – have higher ¹³C content than polar lipids from larger POM and are equally abundant. Lipid signatures from the photic zone appear to be partially conserved in the suspended pool during transit down the water column. However, bacterial heterotrophy and possibly chemoautotrophy partially overprint these surface signatures. In addition, active metabolisms in the oxygen minimum zone (OMZ) appear to mediate the disaggregation of POM transported from the surface, thus adding complexity to the pathways of mid-water carbon flux and providing additional organic substrates to the OMZ and below. This “substrate injection” may provide important fuel for the denitrification and anammox reactions. Finally, examination of ¹³C content in polar lipids provides a basis for new interpretation of depth-related variations in δ¹³C values of bulk suspended POM.  相似文献   

Lipid biomarkers and bacterial lipase activities as indicators of organic matter and bacterial dynamics in contrasted regimes at the DYFAMED site, NW Mediterranean     

Nicolas Bourguet  Madeleine Goutx  Jean-Franois Ghiglione  Mireille Pujo-Pay  Genevive Mvel  Andr Momzikoff  Laure Mousseau  Catherine Guigue  Nicole Garcia  Patrick Raimbault  Romain Pete  Louise Oriol  Dominique Lefvre 《Deep Sea Research Part II: Topical Studies in Oceanography》2009,56(18):1454-1469

This study investigated the relationships between dissolved organic matter (DOM) composition and bacterial dynamics on short time scale during spring mesotrophic (March 2003) and summer oligotrophic (June 2003) regimes, in a 0–500 m depth water column with almost no advection, at the DYFAMED site, NW Mediterranean. DOM was characterized by analyzing dissolved organic carbon (DOC), colored dissolved organic matter (CDOM) and lipid class biotracers. Bacterial dynamic was assessed through the measurement of in situ bacterial lipase activity, abundance, production and bacterial community structure. We made the assumption that by coupling the ambient concentration of hydrolysable acyl-lipids with the measurement of their in situ bacterial hydrolysis rates (i.e. the free fatty acids release rate) would provide new insights about bacterial response to change in environmental conditions. The seasonal transition from spring to summer was accompanied by a significant accumulation of excess DOC (+5 μM) (ANOVA, p<0.05, n=8) in the upper layer (0–50 m). In this layer, the free fatty acids release rate to the bacterial carbon demand (BCD) ratio increased from 0.6±0.3 in March to 1.3±1.0 in June (ANOVA, p<0.05, n=8) showing that more uncoupling between the hydrolysis of the acyl-lipids and the BCD occurred during the evolution of the season, and that free fatty acids contributed to the excess DOC. The increase of lipolysis index and CDOM absorbance (from 0.24±0.17 to 0.39±0.13 and from 0.076±0.039 to 0.144±0.068; ANOVA, p<0.05, n=8, respectively), and the higher contribution of triglycerides, wax esters and phospholipids (from <5% to 12–31%) to the lipid pool reflected the change in the DOM quality. In addition to a strong increase of bacterial lipase activity per cell (51.4±29.4–418.3±290.6 Ag C cell⁻¹ h⁻¹), a significant percentage of ribotypes (39%) was different between spring and summer in the deep chlorophyll maximum (DCM) layer in particular, suggesting a shift in the bacterial community structure due to the different trophic conditions. At both seasons, in the chlorophyll layers, diel variations of DOM and bacterial parameters reflected a better bioavailability and/or DOM utilization by bacteria at night (the ratio of free fatty acids release rate to bacterial carbon demand decreased), most likely related to the zooplankton trophic behaviour. In mesotrophic conditions, such day/night pattern was driving changes in the bacterial community structure. In more oligotrophic period, diel variations in bacterial community structure were depth dependent in relation to the strong summer stratification.  相似文献   

Spatial distribution, diversity and composition of bacterial communities in sub-seafloor fluids at a deep-sea hydrothermal field of the Suiyo Seamount     

Shingo Kato  Kurt Hara  Hiroko Kasai  Takashi Teramura  Michinari Sunamura  Jun-ichiro Ishibashi  Takeshi Kakegawa  Toshiro Yamanaka  Hiroyuki Kimura  Katsumi Marumo  Tetsuro Urabe  Akihiko Yamagishi   《Deep Sea Research Part I: Oceanographic Research Papers》2009,56(10):1844-1855

Spatial distribution, diversity, and composition of bacterial communities within the shallow sub-seafloor at the deep-sea hydrothermal field of the Suiyo Seamount, Izu-Bonin Arc, Western Pacific Ocean, were investigated. Fluids were sampled from four boreholes in this area. Each borehole was located near or away from active vents, the distance ranging 2–40 m from active vents. In addition, fluids discharging from a natural vent and ambient seawater were sampled in this area. We extracted DNA from each sample, amplified bacterial 16S rRNA genes by PCR, cloned the PCR products and sequenced. The total number of clones analyzed was 348. Most of the detected phylotypes were affiliated with the phylum Proteobacteria, of which the detection frequency in each clone library ranged from 84.6% to 100%. The bacterial community diversity and composition were different between hydrothermal fluids and seawater, between fluids from the boreholes and the vent, and even among fluids from each borehole. The relative abundances of the phylotypes related to Thiomicrospira, Methylobacterium and Sphingomonas were significantly different among fluids from each borehole. The phylotypes related to Thiomicrospira and Alcanivorax were detected in all of the boreholes and vent samples. Our findings provide insights into bacterial communities in the shallow sub-seafloor environments at active deep-sea hydrothermal vent fields.  相似文献   

Carbonate and silicate biomineralization in a hypersaline microbial mat (Mesaieed sabkha,Qatar): Roles of bacteria,extracellular polymeric substances and viruses     

《Sedimentology》2018,65(4):1213-1245

In a modern peritidal microbial mat from Qatar, both biomediated carbonates and Mg‐rich clay minerals (palygorskite) were identified. The mat, ca 5 cm thick, shows a clear lamination reflecting different microbial communities. The initial precipitates within the top millimetres of the mat are composed of Ca–Mg–Si–Al–S amorphous nanoparticles (few tens of nanometres) that replace the ultrastructure of extracellular polymeric substances. The extracellular polymeric substances are enriched in the same cations and act as a substrate for mineral nucleation. Successively, crystallites of palygorskite fibres associated with carbonate nanocrystals develop, commonly surrounding bacterial bodies. Micron‐sized crystals of low‐Mg calcite are the most common precipitates, together with subordinate aragonite, very high‐Mg calcite/dolomite and ankerite. Pyrite nanocrystals and framboids are present in the deeper layers of the mat. Calcite crystallites form conical structures, circular to triangular/hexagonal in cross‐section, evolving to crystals with rhombohedral terminations; some crystallite bundles develop into dumb‐bell and stellate forms. Spheroidal organo‐mineral structures are also common within the mat. Nanospheres, a few tens of nanometres in diameter, occur attached to coccoid bacteria and within their cells; these are interpreted as permineralized viruses and could be significant as nuclei for crystallite‐crystal precipitation. Microspheres, 1 to 10 μm in diameter, result from intracellular permineralization within bacteria or the mineralization of the bacteria themselves. Carbonates and clay minerals are commonly aggregated to form peloids, tens of microns in size, surrounded by residual organic matter. Magnesium silicate and carbonate precipitation are likely to have been driven by pH – saturation index – redox changes within the mat, related to microenvironmental chemical changes induced by the microbes – extracellular polymeric substances – viruses and their degradation.  相似文献   

Factors influencing benthic bacterial abundance, biomass, and activity on the northern continental margin and deep basin of the Gulf of Mexico     

Jody W. Deming  Shelly D. Carpenter 《Deep Sea Research Part II: Topical Studies in Oceanography》2008,55(24-26):2597

As part of a larger project on the deep benthos of the Gulf of Mexico, an extensive data set on benthic bacterial abundance (n>750), supplemented with cell-size and rate measurements, was acquired from 51 sites across a depth range of 212–3732 m on the northern continental slope and deep basin during the years 2000, 2001, and 2002. Bacterial abundance, determined by epifluorescence microscopy, was examined region-wide as a function of spatial and temporal variables, while subsets of the data were examined for sediment-based chemical or mineralogical correlates according to the availability of collaborative data sets. In the latter case, depth of oxygen penetration helped to explain bacterial depth profiles into the sediment, but only porewater DOC correlated significantly (inversely) with bacterial abundance (p<0.05, n=24). Other (positive) correlations were detected with TOC, C/N ratios, and % sand when the analysis was restricted to data from the easternmost stations (p<0.05, n=9–12). Region-wide, neither surface bacterial abundance (3.30–16.8×10⁸ bacteria cm⁻³ in 0–1 cm and 4–5 cm strata) nor depth-integrated abundance (4.84–17.5×10¹³ bacteria m⁻², 0–15 cm) could be explained by water depth, station location, sampling year, or vertical POC flux. In contrast, depth-integrated bacterial biomass, derived from measured cell sizes of 0.027–0.072 μm³, declined significantly with station depth (p<0.001, n=56). Steeper declines in biomass were observed for the cross-slope transects (when unusual topographic sites and abyssal stations were excluded). The importance of resource changes with depth was supported by the positive relationship observed between bacterial biomass and vertical POC flux, derived from measures of overlying productivity, a relationship that remained significant when depth was held constant (partial correlation analysis, p<0.05, df=50). Whole-sediment incubation experiments under simulated in situ conditions, using ³H-thymidine or ¹⁴C-amino acids, yielded low production rates (5–75 μg C m⁻² d⁻¹) and higher respiration rates (76–242 μg C m⁻² d⁻¹), with kinetics suggestive of resource limitation at abyssal depths. Compared to similarly examined deep regions of the open ocean, the semi-enclosed Gulf of Mexico (like the Arabian Sea) harbors in its abyssal sediments a greater biomass of bacteria per unit of vertically delivered POC, likely reflecting the greater input of laterally advected, often unreactive, material from its margins.  相似文献